Wall clock time and date at job start Sun Mar 29 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38411 * 120.00229 * 180.02562 * 2 1 3 5 5 N 1.32490 * 119.21782 * 179.73085 * 4 2 1 6 6 C 1.32274 * 120.73857 * 179.71445 * 5 4 2 7 7 C 1.38612 * 119.19705 * 0.54042 * 6 5 4 8 8 C 1.50702 * 120.72049 * 179.71108 * 7 6 5 9 9 C 1.52999 * 109.46896 * 270.02165 * 8 7 6 10 10 C 1.52998 * 109.47343 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47587 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99894 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00150 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00158 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99960 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47365 * 60.00003 * 15 13 11 17 17 H 1.48505 * 109.47071 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47144 * 299.99509 * 15 13 11 19 19 C 1.38605 * 118.55698 * 359.73225 * 7 6 5 20 20 N 1.32280 * 119.19711 * 359.97438 * 19 7 6 21 21 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 22 22 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 24 24 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 25 25 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 26 26 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 27 27 H 1.08003 * 120.40425 * 180.25131 * 6 5 4 28 28 H 1.08996 * 109.47179 * 30.02132 * 8 7 6 29 29 H 1.08995 * 109.46799 * 150.02709 * 8 7 6 30 30 H 1.09003 * 109.47513 * 300.00109 * 9 8 7 31 31 H 1.09000 * 109.47057 * 59.99919 * 9 8 7 32 32 H 1.09003 * 109.46893 * 300.00474 * 10 9 8 33 33 H 1.09010 * 109.46959 * 60.00073 * 10 9 8 34 34 H 0.96995 * 119.99628 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.39895 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1986 -0.0005 5 7 3.4819 -1.1805 -0.0060 6 6 4.1735 -2.3080 -0.0010 7 6 3.4956 -3.5171 -0.0013 8 6 4.2491 -4.8222 -0.0023 9 6 4.5041 -5.2628 -1.4451 10 6 5.2685 -6.5881 -1.4462 11 6 5.5191 -7.0224 -2.8673 12 1 5.1685 -6.4138 -3.6877 13 6 6.1958 -8.1967 -3.1201 14 7 6.6232 -8.9377 -2.1210 15 14 6.5071 -8.7347 -4.8817 16 1 7.3107 -7.7000 -5.5807 17 1 7.2490 -10.0212 -4.8826 18 1 5.2095 -8.9106 -5.5821 19 6 2.1096 -3.4996 -0.0013 20 7 1.4789 -2.3369 -0.0004 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5139 24 1 2.3792 1.5834 1.0276 25 1 3.1499 1.1384 -0.5139 26 1 1.6084 2.0284 -0.5139 27 1 5.2533 -2.2869 -0.0013 28 1 5.2015 -4.6922 0.5116 29 1 3.6600 -5.5821 0.5109 30 1 3.5516 -5.3928 -1.9591 31 1 5.0931 -4.5027 -1.9584 32 1 6.2209 -6.4585 -0.9321 33 1 4.6790 -7.3480 -0.9330 34 1 7.0990 -9.7640 -2.2989 35 1 1.5515 -4.4242 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065638.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:15 Heat of formation + Delta-G solvation = 25.495650 kcal Electronic energy + Delta-G solvation = -15702.743906 eV Core-core repulsion = 13120.969841 eV Total energy + Delta-G solvation = -2581.774065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.93617 -37.97292 -36.38178 -34.62297 -34.56423 -32.00676 -29.11041 -28.79850 -26.53630 -25.25961 -24.52532 -22.57869 -21.66157 -18.66041 -18.65960 -18.42704 -16.65721 -16.52360 -15.75223 -15.66081 -15.30499 -15.25258 -14.87714 -14.29394 -14.25687 -13.84346 -13.42101 -13.13417 -13.11835 -12.83471 -12.59290 -12.56806 -12.55155 -12.04362 -11.76046 -11.43451 -11.26751 -11.21682 -10.72501 -10.51440 -10.02339 -8.72957 -8.17130 -6.27730 0.22574 0.24862 1.41013 1.43456 1.51430 1.77919 2.42793 2.92633 3.15650 3.28080 3.70537 3.87928 4.03914 4.06451 4.37514 4.44984 4.52224 4.56043 4.62437 4.79010 4.84263 4.91588 4.94733 4.96152 5.28000 5.28459 5.29754 5.43124 5.57453 5.83025 5.91602 5.92673 5.93524 6.29943 6.42356 6.89631 7.30307 7.41133 8.93898 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049928 B = 0.003979 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.671864 B = 7036.027534 C = 7121.530043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.603 5.603 3 C 0.103 3.897 4 C 0.530 3.470 5 N -0.581 5.581 6 C 0.186 3.814 7 C -0.238 4.238 8 C -0.051 4.051 9 C -0.090 4.090 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.960 3.040 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.186 3.814 20 N -0.581 5.581 21 H 0.052 0.948 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.184 0.816 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.045 0.955 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 18.003 5.530 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.321 5.321 3 C -0.039 4.039 4 C 0.174 3.826 5 N -0.303 5.303 6 C 0.019 3.981 7 C -0.246 4.246 8 C -0.090 4.090 9 C -0.128 4.128 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.785 3.215 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.193 1.193 19 C 0.019 3.981 20 N -0.303 5.303 21 H 0.071 0.929 22 H 0.114 0.886 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.200 0.800 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.934 18.946 5.566 22.572 hybrid contribution 0.864 -1.498 -0.811 1.910 sum -10.070 17.448 4.755 20.699 Atomic orbital electron populations 1.21709 0.76421 1.03784 1.01984 1.46164 1.06685 1.01804 1.77492 1.21708 0.97352 0.82745 1.02098 1.19677 0.85823 0.87243 0.89864 1.67925 1.07097 1.32303 1.22989 1.23212 1.01171 0.86054 0.87631 1.21409 0.96189 0.97805 1.09171 1.20280 0.99625 0.92030 0.97046 1.21427 0.99073 0.96888 0.95377 1.19037 0.94414 0.92805 0.95163 1.21707 1.35891 1.06646 0.94064 0.92671 1.25928 0.95484 0.96757 1.01511 1.70077 1.39448 1.14682 1.33008 0.85575 0.78582 0.77569 0.79777 1.19344 1.20743 1.19333 1.23210 0.91679 0.95548 0.87635 1.67929 1.41187 0.98204 1.22996 0.92922 0.88604 0.91439 0.92558 0.91629 0.88767 0.79955 0.90581 0.90591 0.93636 0.93626 0.98545 0.98548 0.92785 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.44 127.77 1.33 3.08 16 2 N -0.60 -13.75 3.37 -761.02 -2.57 -16.32 16 3 C 0.10 1.74 10.44 127.77 1.33 3.07 16 4 C 0.53 15.49 8.17 261.49 2.14 17.62 16 5 N -0.58 -17.23 9.11 -197.98 -1.80 -19.03 16 6 C 0.19 5.24 11.00 84.72 0.93 6.18 16 7 C -0.24 -6.89 5.17 -19.69 -0.10 -7.00 16 8 C -0.05 -1.60 5.39 29.85 0.16 -1.44 16 9 C -0.09 -3.59 5.13 30.59 0.16 -3.44 16 10 C 0.02 1.18 4.97 29.85 0.15 1.33 16 11 C -0.55 -31.16 9.11 25.60 0.23 -30.93 16 12 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.00 0.06 5.46 84.65 0.46 0.52 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 15 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.19 5.24 11.00 84.71 0.93 6.18 16 20 N -0.58 -17.23 9.11 -197.98 -1.80 -19.03 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 23 H 0.07 1.31 7.33 -2.38 -0.02 1.30 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.31 7.33 -2.39 -0.02 1.29 16 26 H 0.09 1.03 8.07 -2.38 -0.02 1.01 16 27 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 28 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -68.75 300.06 4.92 -63.84 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.05 Total: 5.21 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 7.73 Total: -4.83 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -5.89 Total: -110.71 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.75 4.92 -63.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065638.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.333 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds