Wall clock time and date at job start Sun Mar 29 2020 22:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09001 * 109.47232 * 305.49242 * 3 2 1 5 5 C 1.50701 * 109.47205 * 185.48908 * 3 2 1 6 6 H 1.07998 * 119.99793 * 245.57732 * 5 3 2 7 7 C 1.37874 * 119.99865 * 65.58113 * 5 3 2 8 8 N 1.31521 * 119.99893 * 197.06602 * 7 5 3 9 9 Si 1.86803 * 120.00334 * 17.06838 * 7 5 3 10 10 H 1.48495 * 109.47362 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46975 * 300.00480 * 9 7 5 12 12 H 1.48507 * 109.46918 * 59.99824 * 9 7 5 13 13 N 1.46503 * 109.47319 * 65.48928 * 3 2 1 14 14 C 1.36286 * 119.84316 * 59.99790 * 13 3 2 15 15 C 1.34955 * 120.74539 * 180.02562 * 14 13 3 16 16 C 1.40565 * 120.40861 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.16931 * 179.97438 * 16 15 14 18 18 N 1.46895 * 109.47545 * 90.00230 * 17 16 15 19 19 C 1.35871 * 119.66083 * 359.97438 * 16 15 14 20 20 C 1.37407 * 119.84837 * 239.72940 * 13 3 2 21 21 N 1.31696 * 120.20018 * 0.02562 * 20 13 3 22 22 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 25 25 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 26 26 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 27 27 H 0.96998 * 119.99651 * 354.55448 * 8 7 5 28 28 H 1.07995 * 119.63019 * 359.97438 * 14 13 3 29 29 H 1.08005 * 119.79417 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47378 * 210.00479 * 17 16 15 31 31 H 1.09003 * 109.47258 * 329.99831 * 17 16 15 32 32 H 1.00905 * 111.00109 * 56.04336 * 18 17 16 33 33 H 1.00899 * 111.00391 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.35809 * 180.02562 * 19 16 15 35 35 H 0.96999 * 119.99616 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5985 1.9840 -0.8367 5 6 3.5408 1.4447 -0.1359 6 1 4.1559 1.8049 0.6754 7 6 4.1286 0.9870 -1.2961 8 7 5.4051 0.6706 -1.3060 9 14 3.1119 0.8163 -2.8539 10 1 3.9718 0.3089 -3.9531 11 1 1.9979 -0.1364 -2.6160 12 1 2.5578 2.1415 -3.2310 13 7 1.6625 2.0940 1.2568 14 6 2.1031 1.5869 2.4425 15 6 1.7661 2.1721 3.6110 16 6 0.9518 3.3178 3.6241 17 6 0.5783 3.9666 4.9319 18 7 1.5837 4.9791 5.2810 19 6 0.5032 3.8373 2.4515 20 6 0.8704 3.2166 1.2342 21 7 0.4498 3.7076 0.0868 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9512 0.8333 -0.5209 28 1 2.7284 0.7064 2.4473 29 1 2.1242 1.7575 4.5418 30 1 -0.3979 4.4419 4.8360 31 1 0.5383 3.2092 5.7148 32 1 1.6859 5.6575 4.5410 33 1 1.3558 5.4286 6.1551 34 1 -0.1226 4.7175 2.4484 35 1 -0.1095 4.5000 0.0744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:07 Heat of formation + Delta-G solvation = 49.384289 kcal Electronic energy + Delta-G solvation = -16883.001452 eV Core-core repulsion = 14302.263276 eV Total energy + Delta-G solvation = -2580.738176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04319 -36.35275 -34.34609 -33.25689 -32.22286 -31.19413 -28.25418 -27.29457 -25.33378 -22.83025 -22.51330 -21.07767 -19.72792 -17.69125 -16.78125 -16.31188 -15.63568 -15.46059 -14.67019 -14.50025 -13.99184 -13.78353 -13.43176 -12.88394 -12.57948 -12.52618 -12.32060 -11.81103 -11.49713 -11.23446 -10.97383 -10.72624 -10.49103 -9.98949 -9.87980 -9.70709 -9.45189 -8.93468 -8.75662 -8.49603 -8.30127 -6.72130 -6.45424 -4.24548 1.51023 2.54383 3.33521 3.45801 3.52403 3.64277 4.17953 4.39313 4.70274 4.89138 5.07747 5.11923 5.45494 5.51675 5.59222 5.73774 5.82725 5.88243 5.94757 6.06860 6.27249 6.49635 6.60097 6.64399 6.76162 6.80406 6.83107 7.00550 7.04723 7.15937 7.32227 7.67390 7.81323 8.08022 8.24346 8.73584 9.15932 9.44035 10.79945 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031916 B = 0.007747 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.097598 B = 3613.240912 C = 3817.841580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.226 3.774 4 H 0.080 0.920 5 C -0.618 4.618 6 H 0.063 0.937 7 C 0.042 3.958 8 N -0.895 5.895 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.276 1.276 13 N -0.441 5.441 14 C 0.189 3.811 15 C -0.272 4.272 16 C 0.017 3.983 17 C 0.099 3.901 18 N -0.843 5.843 19 C -0.256 4.256 20 C 0.423 3.577 21 N -0.808 5.808 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.269 0.731 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.344 0.656 33 H 0.340 0.660 34 H 0.121 0.879 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 2.832 10.115 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.125 3.875 4 H 0.098 0.902 5 C -0.656 4.656 6 H 0.081 0.919 7 C -0.165 4.165 8 N -0.528 5.528 9 Si 0.865 3.135 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.201 1.201 13 N -0.130 5.130 14 C 0.056 3.944 15 C -0.299 4.299 16 C 0.010 3.990 17 C -0.031 4.031 18 N -0.373 5.373 19 C -0.282 4.282 20 C 0.154 3.846 21 N -0.440 5.440 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.175 0.825 29 H 0.147 0.853 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.182 1.362 7.316 11.819 hybrid contribution -1.127 1.987 2.413 3.323 sum -10.309 3.349 9.728 14.565 Atomic orbital electron populations 1.21800 0.97550 0.99984 1.01287 1.22423 0.93792 0.99086 1.02740 1.19786 0.96927 0.89013 0.81769 0.90198 1.22207 0.89238 1.49656 1.04514 0.91922 1.25673 0.97532 0.92263 1.01075 1.70879 1.07320 1.40384 1.34187 0.84155 0.75449 0.77901 0.76002 1.20873 1.19697 1.20134 1.44149 1.39023 1.21755 1.08050 1.21833 0.91883 0.96392 0.84316 1.20070 1.10789 1.01878 0.97212 1.19650 0.92368 0.93231 0.93750 1.20752 0.92419 0.94943 0.94981 1.58620 1.50719 1.20006 1.07934 1.21647 1.10004 1.04392 0.92162 1.18567 0.88911 0.86603 0.90525 1.69844 1.27335 1.22097 1.24771 0.93035 0.93871 0.93818 0.90281 0.92612 0.92026 0.82477 0.85254 0.94906 0.90070 0.84374 0.84742 0.86071 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.80 37.15 0.36 -2.38 16 2 C -0.14 -2.98 5.01 -26.73 -0.13 -3.12 16 3 C 0.23 5.35 1.61 -69.08 -0.11 5.24 16 4 H 0.08 2.06 5.46 -51.93 -0.28 1.78 16 5 C -0.62 -16.80 8.60 -34.44 -0.30 -17.09 16 6 H 0.06 1.84 7.75 -52.49 -0.41 1.43 16 7 C 0.04 1.16 5.31 -17.82 -0.09 1.07 16 8 N -0.89 -26.57 13.70 55.43 0.76 -25.82 16 9 Si 1.04 24.92 26.29 -169.99 -4.47 20.45 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -5.91 5.71 56.52 0.32 -5.59 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.44 -9.38 2.08 -110.41 -0.23 -9.61 16 14 C 0.19 3.51 8.89 -16.74 -0.15 3.36 16 15 C -0.27 -4.39 9.67 -39.87 -0.39 -4.78 16 16 C 0.02 0.25 5.39 -104.60 -0.56 -0.31 16 17 C 0.10 1.15 6.92 -4.98 -0.03 1.12 16 18 N -0.84 -9.27 9.61 -11.41 -0.11 -9.38 16 19 C -0.26 -4.34 9.52 -39.19 -0.37 -4.71 16 20 C 0.42 8.74 7.50 -156.25 -1.17 7.57 16 21 N -0.81 -17.44 12.63 31.19 0.39 -17.05 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.80 7.77 -51.93 -0.40 0.40 16 25 H 0.08 1.74 4.81 -51.93 -0.25 1.49 16 26 H 0.06 1.10 7.06 -51.93 -0.37 0.74 16 27 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 28 H 0.16 2.79 7.35 -52.49 -0.39 2.40 16 29 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.34 3.79 8.99 -39.29 -0.35 3.44 16 33 H 0.34 2.79 9.08 -39.29 -0.36 2.43 16 34 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.33 6.25 8.75 -40.82 -0.36 5.90 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -30.60 286.78 -7.21 -37.81 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -4.92 Total: 13.31 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.95 Total: -14.03 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.81 Total: -61.86 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.60 -7.21 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.192 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds