Wall clock time and date at job start Sun Mar 29 2020 22:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09001 * 109.47232 * 305.49242 * 3 2 1 5 5 C 1.50701 * 109.47205 * 185.48908 * 3 2 1 6 6 H 1.07998 * 119.99793 * 245.57732 * 5 3 2 7 7 C 1.37874 * 119.99865 * 65.58113 * 5 3 2 8 8 N 1.31521 * 119.99893 * 197.06602 * 7 5 3 9 9 Si 1.86803 * 120.00334 * 17.06838 * 7 5 3 10 10 H 1.48495 * 109.47362 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46975 * 300.00480 * 9 7 5 12 12 H 1.48507 * 109.46918 * 59.99824 * 9 7 5 13 13 N 1.46503 * 109.47319 * 65.48928 * 3 2 1 14 14 C 1.36286 * 119.84316 * 59.99790 * 13 3 2 15 15 C 1.34955 * 120.74539 * 180.02562 * 14 13 3 16 16 C 1.40565 * 120.40861 * 0.02562 * 15 14 13 17 17 C 1.50691 * 120.16931 * 179.97438 * 16 15 14 18 18 N 1.46895 * 109.47545 * 90.00230 * 17 16 15 19 19 C 1.35871 * 119.66083 * 359.97438 * 16 15 14 20 20 C 1.37407 * 119.84837 * 239.72940 * 13 3 2 21 21 N 1.31696 * 120.20018 * 0.02562 * 20 13 3 22 22 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 23 23 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 25 25 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 26 26 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 27 27 H 0.96998 * 119.99651 * 354.55448 * 8 7 5 28 28 H 1.07995 * 119.63019 * 359.97438 * 14 13 3 29 29 H 1.08005 * 119.79417 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47378 * 210.00479 * 17 16 15 31 31 H 1.09003 * 109.47258 * 329.99831 * 17 16 15 32 32 H 1.00905 * 111.00109 * 56.04336 * 18 17 16 33 33 H 1.00899 * 111.00391 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.35809 * 180.02562 * 19 16 15 35 35 H 0.96999 * 119.99616 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5985 1.9840 -0.8367 5 6 3.5408 1.4447 -0.1359 6 1 4.1559 1.8049 0.6754 7 6 4.1286 0.9870 -1.2961 8 7 5.4051 0.6706 -1.3060 9 14 3.1119 0.8163 -2.8539 10 1 3.9718 0.3089 -3.9531 11 1 1.9979 -0.1364 -2.6160 12 1 2.5578 2.1415 -3.2310 13 7 1.6625 2.0940 1.2568 14 6 2.1031 1.5869 2.4425 15 6 1.7661 2.1721 3.6110 16 6 0.9518 3.3178 3.6241 17 6 0.5783 3.9666 4.9319 18 7 1.5837 4.9791 5.2810 19 6 0.5032 3.8373 2.4515 20 6 0.8704 3.2166 1.2342 21 7 0.4498 3.7076 0.0868 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9512 0.8333 -0.5209 28 1 2.7284 0.7064 2.4473 29 1 2.1242 1.7575 4.5418 30 1 -0.3979 4.4419 4.8360 31 1 0.5383 3.2092 5.7148 32 1 1.6859 5.6575 4.5410 33 1 1.3558 5.4286 6.1551 34 1 -0.1226 4.7175 2.4484 35 1 -0.1095 4.5000 0.0744 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:06 Heat of formation + Delta-G solvation = 27.901505 kcal Electronic energy + Delta-G solvation = -16883.933015 eV Core-core repulsion = 14302.263276 eV Total energy + Delta-G solvation = -2581.669739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52752 -37.73090 -35.81897 -34.74646 -34.12592 -32.54891 -29.73482 -29.02815 -26.57488 -24.41941 -24.13711 -22.57997 -21.25902 -19.74833 -18.10271 -17.88478 -17.00191 -16.62616 -16.19873 -15.82455 -15.32097 -15.29859 -15.01728 -14.55884 -14.15537 -14.09944 -13.86367 -13.27287 -12.75468 -12.73151 -12.54270 -12.45144 -12.22368 -11.69813 -11.50236 -11.41656 -11.20362 -10.63320 -10.45396 -9.98633 -9.61267 -8.85458 -8.05012 -6.46815 0.14782 1.12874 1.41033 1.51444 1.68154 2.04083 2.38917 2.78050 2.99341 3.71144 3.84885 3.91874 4.15016 4.19419 4.27463 4.32845 4.45254 4.47809 4.63933 4.71267 4.85354 4.98073 5.06204 5.07463 5.22968 5.38515 5.42443 5.53755 5.59135 5.70289 5.95811 6.16569 6.23728 6.45788 6.58171 6.59824 7.28410 7.68966 8.56315 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031916 B = 0.007747 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.097598 B = 3613.240912 C = 3817.841580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.233 3.767 4 H 0.060 0.940 5 C -0.614 4.614 6 H 0.028 0.972 7 C -0.003 4.003 8 N -0.925 5.925 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.234 1.234 12 H -0.279 1.279 13 N -0.456 5.456 14 C 0.156 3.844 15 C -0.250 4.250 16 C 0.022 3.978 17 C 0.104 3.896 18 N -0.853 5.853 19 C -0.259 4.259 20 C 0.409 3.591 21 N -0.845 5.845 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.256 0.744 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.343 0.657 33 H 0.358 0.642 34 H 0.144 0.856 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 2.834 11.810 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.130 3.870 4 H 0.078 0.922 5 C -0.652 4.652 6 H 0.046 0.954 7 C -0.203 4.203 8 N -0.560 5.560 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.158 1.158 12 H -0.205 1.205 13 N -0.146 5.146 14 C 0.026 3.974 15 C -0.277 4.277 16 C 0.016 3.984 17 C -0.026 4.026 18 N -0.385 5.385 19 C -0.285 4.285 20 C 0.141 3.859 21 N -0.481 5.481 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.252 1.360 9.086 14.526 hybrid contribution -0.454 2.084 2.071 2.973 sum -11.706 3.443 11.157 16.534 Atomic orbital electron populations 1.21688 0.95182 1.01768 1.00887 1.22277 0.95815 0.96895 1.02646 1.19436 0.94049 0.90669 0.82803 0.92223 1.22349 0.91450 1.48216 1.03171 0.95360 1.26846 0.97692 0.91933 1.03865 1.70987 1.08335 1.42968 1.33734 0.83750 0.75447 0.78605 0.72974 1.20805 1.15846 1.20479 1.44005 1.40261 1.22509 1.07857 1.22040 0.93473 0.97485 0.84437 1.20510 1.08781 1.01140 0.97220 1.20070 0.90713 0.92479 0.95173 1.20766 0.93295 0.95495 0.93071 1.58590 1.50722 1.20265 1.08884 1.21810 1.10467 1.05014 0.91225 1.19005 0.88650 0.86375 0.91846 1.69791 1.28994 1.23344 1.25981 0.93701 0.90904 0.93958 0.91248 0.91815 0.93458 0.82657 0.82471 0.92974 0.88419 0.84476 0.82755 0.83816 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.80 71.98 0.71 -4.09 16 2 C -0.14 -5.66 5.01 30.59 0.15 -5.50 16 3 C 0.23 11.07 1.61 44.25 0.07 11.14 16 4 H 0.06 3.10 5.46 -2.39 -0.01 3.09 16 5 C -0.61 -34.32 8.60 25.60 0.22 -34.10 16 6 H 0.03 1.73 7.75 -2.91 -0.02 1.71 16 7 C 0.00 -0.15 5.31 84.65 0.45 0.30 16 8 N -0.93 -56.67 13.70 21.45 0.29 -56.37 16 9 Si 1.07 50.56 26.29 68.60 1.80 52.36 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.23 -9.65 5.71 99.48 0.57 -9.08 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.46 -19.32 2.08 -503.24 -1.05 -20.37 16 14 C 0.16 5.69 8.89 83.25 0.74 6.43 16 15 C -0.25 -7.44 9.67 22.08 0.21 -7.22 16 16 C 0.02 0.62 5.39 -19.85 -0.11 0.51 16 17 C 0.10 1.97 6.92 85.56 0.59 2.57 16 18 N -0.85 -15.74 9.61 -190.02 -1.83 -17.57 16 19 C -0.26 -8.23 9.52 22.52 0.21 -8.02 16 20 C 0.41 16.63 7.50 134.40 1.01 17.64 16 21 N -0.85 -36.44 12.63 -55.23 -0.70 -37.14 16 22 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.04 1.47 7.77 -2.39 -0.02 1.45 16 25 H 0.07 2.95 4.81 -2.39 -0.01 2.94 16 26 H 0.06 2.47 7.06 -2.38 -0.02 2.45 16 27 H 0.26 15.84 8.73 -92.71 -0.81 15.03 16 28 H 0.16 5.55 7.35 -2.91 -0.02 5.53 16 29 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 32 H 0.34 6.55 8.99 -89.69 -0.81 5.75 16 33 H 0.36 4.55 9.08 -89.69 -0.81 3.74 16 34 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.34 12.78 8.75 -92.71 -0.81 11.97 16 Total: -1.00 -67.61 286.78 1.30 -66.31 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -1.49 Total: 33.12 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.26 Total: -20.35 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -3.28 Total: -131.44 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.80 Total: 52.36 kcal Total: -67.61 1.30 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.215 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds