Wall clock time and date at job start Sun Mar 29 2020 22:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09007 * 109.47236 * 54.47172 * 3 2 1 5 5 C 1.50701 * 109.47390 * 174.47108 * 3 2 1 6 6 H 1.07997 * 119.99937 * 120.00460 * 5 3 2 7 7 C 1.37880 * 119.99679 * 299.99934 * 5 3 2 8 8 N 1.31510 * 120.00168 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99657 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47298 * 120.00495 * 9 7 5 12 12 H 1.48502 * 109.47256 * 240.00129 * 9 7 5 13 13 N 1.46900 * 109.47226 * 294.47389 * 3 2 1 14 14 C 1.46905 * 111.00004 * 153.08056 * 13 3 2 15 15 H 1.08994 * 109.47522 * 33.18824 * 14 13 3 16 16 C 1.53002 * 109.46771 * 273.19002 * 14 13 3 17 17 C 1.50698 * 109.47145 * 153.19424 * 14 13 3 18 18 C 1.38602 * 120.80123 * 39.71683 * 17 14 13 19 19 N 1.32331 * 119.10009 * 179.72301 * 18 17 14 20 20 C 1.31797 * 120.82134 * 0.56330 * 19 18 17 21 21 N 1.31797 * 121.75395 * 359.70766 * 20 19 18 22 22 C 1.32333 * 120.81799 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47402 * 300.54357 * 1 2 3 24 24 H 1.09002 * 109.47162 * 180.54335 * 1 2 3 25 25 H 1.09000 * 109.47272 * 60.54193 * 1 2 3 26 26 H 1.09000 * 109.47102 * 119.99934 * 2 1 3 27 27 H 1.08999 * 109.47268 * 240.00083 * 2 1 3 28 28 H 0.96998 * 119.99754 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00028 * 29.11911 * 13 3 2 30 30 H 1.09004 * 109.47242 * 304.88916 * 16 14 13 31 31 H 1.08999 * 109.47405 * 64.88811 * 16 14 13 32 32 H 1.08996 * 109.47274 * 184.89346 * 16 14 13 33 33 H 1.08002 * 120.44552 * 359.97438 * 18 17 14 34 34 H 1.08001 * 119.11935 * 179.73005 * 20 19 18 35 35 H 1.07990 * 120.44750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5407 1.4447 0.1369 6 1 4.1527 1.8870 -0.6353 7 6 4.1324 0.8822 1.2480 8 7 3.3872 0.3433 2.1881 9 14 5.9927 0.8844 1.4173 10 1 6.5968 1.5459 0.2330 11 1 6.3771 1.6237 2.6465 12 1 6.4832 -0.5144 1.5074 13 7 1.6623 2.0954 -1.2605 14 6 1.5377 3.5485 -1.0840 15 1 2.2592 3.8875 -0.3408 16 6 0.1221 3.8852 -0.6111 17 6 1.8063 4.2388 -2.3964 18 6 1.3334 3.7091 -3.5868 19 7 1.5842 4.3461 -4.7192 20 6 2.2829 5.4637 -4.7249 21 7 2.7529 5.9935 -3.6135 22 6 2.5374 5.4153 -2.4428 23 1 -0.3634 0.5222 0.8850 24 1 -0.3633 -1.0276 0.0097 25 1 -0.3634 0.5054 -0.8948 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8035 -0.0527 2.9695 29 1 0.8102 1.7016 -1.6306 30 1 -0.6032 3.4701 -1.3110 31 1 -0.0419 3.4577 0.3781 32 1 0.0026 4.9675 -0.5635 33 1 0.7645 2.7911 -3.5895 34 1 2.4751 5.9585 -5.6655 35 1 2.9250 5.8549 -1.5357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:16 Heat of formation + Delta-G solvation = 38.522495 kcal Electronic energy + Delta-G solvation = -16672.976424 eV Core-core repulsion = 14091.767245 eV Total energy + Delta-G solvation = -2581.209178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75381 -37.16953 -34.07804 -33.42343 -31.84412 -30.43487 -28.49929 -26.22947 -24.57485 -24.20065 -22.83496 -20.64099 -19.70847 -17.41604 -17.16669 -16.25495 -15.29388 -14.85144 -14.44123 -14.01072 -13.79620 -13.42671 -13.27110 -12.91256 -12.68261 -12.42178 -11.96356 -11.78088 -11.24552 -11.05421 -10.93327 -10.66791 -10.55118 -10.47477 -10.01854 -9.78129 -9.71465 -9.23830 -8.98158 -8.97380 -8.40972 -7.38703 -6.02752 -4.07028 1.19544 1.33574 3.27878 3.36599 3.41951 4.03204 4.36036 4.39545 4.46541 4.88564 4.93327 5.19886 5.26681 5.40701 5.57067 5.61000 5.73144 6.00524 6.08961 6.10412 6.16121 6.27947 6.37246 6.47650 6.66041 6.77135 6.99687 7.08089 7.18974 7.40452 7.70764 7.85311 8.16875 8.29837 8.31440 8.63169 9.01447 9.58674 11.02476 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.007776 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.139143 B = 3600.159883 C = 4352.864637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.679 5.679 14 C 0.131 3.869 15 H 0.098 0.902 16 C -0.173 4.173 17 C -0.149 4.149 18 C 0.162 3.838 19 N -0.525 5.525 20 C 0.270 3.730 21 N -0.523 5.523 22 C 0.143 3.857 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.259 0.741 29 H 0.319 0.681 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.164 0.836 34 H 0.189 0.811 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 6.233 -6.369 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.019 3.981 15 H 0.116 0.884 16 C -0.232 4.232 17 C -0.153 4.153 18 C -0.004 4.004 19 N -0.238 5.238 20 C -0.018 4.018 21 N -0.237 5.237 22 C -0.023 4.023 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.137 0.863 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.205 0.795 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.951 6.621 -7.294 11.024 hybrid contribution 0.062 -0.491 1.468 1.549 sum -4.889 6.130 -5.825 9.768 Atomic orbital electron populations 1.21885 0.99540 0.99687 0.99621 1.21789 0.91258 1.00322 1.03219 1.19183 0.95462 0.89965 0.84011 0.97542 1.21242 0.91219 1.36598 1.04255 0.92083 1.24942 0.98077 0.95568 0.95842 1.69869 1.34635 1.39402 1.09612 0.86520 0.85828 0.77673 0.77877 1.19815 1.21190 1.21103 1.60798 1.37071 1.00319 1.32856 1.20288 0.96050 0.90423 0.91383 0.88429 1.22489 0.97309 1.01407 1.01998 1.21878 0.98254 0.96551 0.98667 1.22965 0.93439 0.97164 0.86864 1.68384 1.15064 1.09431 1.30914 1.24776 0.90637 0.89687 0.96708 1.68365 1.21383 1.34515 0.99403 1.23101 0.91801 0.91317 0.96088 0.93824 0.94367 0.94659 0.88135 0.94025 0.93080 0.86267 0.92947 0.91616 0.92837 0.81922 0.79478 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.74 37.15 0.36 -2.33 16 2 C -0.13 -2.82 5.35 -26.73 -0.14 -2.97 16 3 C 0.22 5.07 1.82 -68.87 -0.13 4.94 16 4 H 0.01 0.17 7.29 -51.92 -0.38 -0.21 16 5 C -0.49 -13.02 8.61 -34.44 -0.30 -13.32 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -12.93 5.50 -102.17 -0.56 -13.49 16 14 C 0.13 2.17 2.62 -68.86 -0.18 1.99 16 15 H 0.10 1.81 7.59 -51.93 -0.39 1.41 16 16 C -0.17 -2.44 9.15 37.16 0.34 -2.10 16 17 C -0.15 -2.32 4.98 -104.35 -0.52 -2.84 16 18 C 0.16 2.47 10.62 -17.20 -0.18 2.29 16 19 N -0.52 -8.04 10.44 -14.58 -0.15 -8.19 16 20 C 0.27 3.82 12.29 -92.15 -1.13 2.69 16 21 N -0.52 -7.96 10.44 -14.58 -0.15 -8.11 16 22 C 0.14 2.14 10.97 -17.20 -0.19 1.96 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.56 6.48 -51.93 -0.34 0.22 16 26 H 0.10 2.55 5.94 -51.93 -0.31 2.24 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.32 5.47 5.68 -39.29 -0.22 5.24 16 30 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.06 1.00 7.64 -51.93 -0.40 0.60 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.16 2.27 7.43 -52.49 -0.39 1.88 16 34 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -28.35 290.87 -7.97 -36.32 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.93 Total: 5.26 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.16 Total: -8.27 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.24 Total: -53.76 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.35 -7.97 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.842 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds