Wall clock time and date at job start Sun Mar 29 2020 22:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09007 * 109.47236 * 54.47172 * 3 2 1 5 5 C 1.50701 * 109.47390 * 174.47108 * 3 2 1 6 6 H 1.07997 * 119.99937 * 120.00460 * 5 3 2 7 7 C 1.37880 * 119.99679 * 299.99934 * 5 3 2 8 8 N 1.31510 * 120.00168 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99657 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47298 * 120.00495 * 9 7 5 12 12 H 1.48502 * 109.47256 * 240.00129 * 9 7 5 13 13 N 1.46900 * 109.47226 * 294.47389 * 3 2 1 14 14 C 1.46905 * 111.00004 * 153.08056 * 13 3 2 15 15 H 1.08994 * 109.47522 * 33.18824 * 14 13 3 16 16 C 1.53002 * 109.46771 * 273.19002 * 14 13 3 17 17 C 1.50698 * 109.47145 * 153.19424 * 14 13 3 18 18 C 1.38602 * 120.80123 * 39.71683 * 17 14 13 19 19 N 1.32331 * 119.10009 * 179.72301 * 18 17 14 20 20 C 1.31797 * 120.82134 * 0.56330 * 19 18 17 21 21 N 1.31797 * 121.75395 * 359.70766 * 20 19 18 22 22 C 1.32333 * 120.81799 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47402 * 300.54357 * 1 2 3 24 24 H 1.09002 * 109.47162 * 180.54335 * 1 2 3 25 25 H 1.09000 * 109.47272 * 60.54193 * 1 2 3 26 26 H 1.09000 * 109.47102 * 119.99934 * 2 1 3 27 27 H 1.08999 * 109.47268 * 240.00083 * 2 1 3 28 28 H 0.96998 * 119.99754 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00028 * 29.11911 * 13 3 2 30 30 H 1.09004 * 109.47242 * 304.88916 * 16 14 13 31 31 H 1.08999 * 109.47405 * 64.88811 * 16 14 13 32 32 H 1.08996 * 109.47274 * 184.89346 * 16 14 13 33 33 H 1.08002 * 120.44552 * 359.97438 * 18 17 14 34 34 H 1.08001 * 119.11935 * 179.73005 * 20 19 18 35 35 H 1.07990 * 120.44750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5407 1.4447 0.1369 6 1 4.1527 1.8870 -0.6353 7 6 4.1324 0.8822 1.2480 8 7 3.3872 0.3433 2.1881 9 14 5.9927 0.8844 1.4173 10 1 6.5968 1.5459 0.2330 11 1 6.3771 1.6237 2.6465 12 1 6.4832 -0.5144 1.5074 13 7 1.6623 2.0954 -1.2605 14 6 1.5377 3.5485 -1.0840 15 1 2.2592 3.8875 -0.3408 16 6 0.1221 3.8852 -0.6111 17 6 1.8063 4.2388 -2.3964 18 6 1.3334 3.7091 -3.5868 19 7 1.5842 4.3461 -4.7192 20 6 2.2829 5.4637 -4.7249 21 7 2.7529 5.9935 -3.6135 22 6 2.5374 5.4153 -2.4428 23 1 -0.3634 0.5222 0.8850 24 1 -0.3633 -1.0276 0.0097 25 1 -0.3634 0.5054 -0.8948 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8035 -0.0527 2.9695 29 1 0.8102 1.7016 -1.6306 30 1 -0.6032 3.4701 -1.3110 31 1 -0.0419 3.4577 0.3781 32 1 0.0026 4.9675 -0.5635 33 1 0.7645 2.7911 -3.5895 34 1 2.4751 5.9585 -5.6655 35 1 2.9250 5.8549 -1.5357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:15 Heat of formation + Delta-G solvation = 21.510499 kcal Electronic energy + Delta-G solvation = -16673.714119 eV Core-core repulsion = 14091.767245 eV Total energy + Delta-G solvation = -2581.946874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.91957 -38.70717 -35.67832 -34.58245 -33.70406 -31.78747 -29.90919 -28.02942 -25.76280 -25.44853 -24.53052 -21.96186 -21.46956 -18.52994 -18.44671 -18.19633 -16.76732 -16.60073 -15.71472 -15.63594 -15.24495 -14.56772 -14.46420 -14.44186 -14.20339 -13.76105 -13.49128 -13.16749 -13.00850 -12.79626 -12.53220 -12.32604 -12.00382 -11.87142 -11.71196 -11.50002 -11.28726 -11.04794 -10.42070 -10.24784 -10.14597 -8.99877 -8.06041 -6.16862 0.03738 0.16122 1.38403 1.42330 1.52376 2.43661 2.87189 3.19422 3.29250 3.33466 3.55778 3.78133 3.94912 4.11987 4.37629 4.44785 4.56474 4.60498 4.61776 4.74542 4.84550 4.95832 5.07512 5.16838 5.23571 5.30039 5.40900 5.51764 5.63807 5.77370 5.92921 6.04087 6.38306 6.52731 6.97068 7.00530 7.15308 7.52334 8.96615 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.007776 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.139143 B = 3600.159883 C = 4352.864637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.230 3.770 4 H -0.018 1.018 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.681 5.681 14 C 0.136 3.864 15 H 0.072 0.928 16 C -0.164 4.164 17 C -0.159 4.159 18 C 0.159 3.841 19 N -0.536 5.536 20 C 0.270 3.730 21 N -0.535 5.535 22 C 0.138 3.862 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.175 0.825 34 H 0.222 0.778 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 6.798 -7.515 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.122 3.878 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.313 5.313 14 C 0.024 3.976 15 H 0.090 0.910 16 C -0.223 4.223 17 C -0.163 4.163 18 C -0.007 4.007 19 N -0.249 5.249 20 C -0.017 4.017 21 N -0.248 5.248 22 C -0.027 4.027 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.192 0.808 34 H 0.238 0.762 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.517 7.195 -8.452 12.395 hybrid contribution 0.247 -0.620 1.767 1.888 sum -5.270 6.575 -6.685 10.756 Atomic orbital electron populations 1.21750 0.96081 1.01134 1.00645 1.21618 0.94366 0.99128 1.01134 1.18882 0.93526 0.90541 0.84819 1.00031 1.21496 0.93134 1.36226 1.03796 0.93698 1.25566 1.01562 0.95543 0.95796 1.69981 1.35869 1.39968 1.09909 0.85680 0.81707 0.77577 0.77661 1.20016 1.20707 1.20835 1.60616 1.38148 1.01760 1.30815 1.20166 0.97007 0.88819 0.91599 0.90994 1.22374 0.95838 1.02582 1.01464 1.21727 0.99432 0.97050 0.98127 1.23170 0.93282 0.97472 0.86769 1.68463 1.15689 1.09991 1.30767 1.25490 0.89352 0.89236 0.97666 1.68453 1.21871 1.34820 0.99669 1.23379 0.91320 0.91228 0.96801 0.94239 0.92709 0.92149 0.91534 0.94700 0.93119 0.84840 0.91255 0.92952 0.91153 0.80841 0.76197 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.74 71.98 0.70 -4.06 16 2 C -0.12 -5.49 5.35 30.59 0.16 -5.33 16 3 C 0.23 10.68 1.82 44.17 0.08 10.76 16 4 H -0.02 -0.91 7.29 -2.38 -0.02 -0.93 16 5 C -0.51 -27.19 8.61 25.60 0.22 -26.97 16 6 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -51.19 11.29 21.45 0.24 -50.95 16 9 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.68 -25.52 5.50 -477.15 -2.63 -28.15 16 14 C 0.14 4.43 2.62 44.17 0.12 4.54 16 15 H 0.07 2.71 7.59 -2.39 -0.02 2.69 16 16 C -0.16 -4.37 9.15 71.98 0.66 -3.71 16 17 C -0.16 -4.74 4.98 -19.69 -0.10 -4.84 16 18 C 0.16 4.56 10.62 84.70 0.90 5.46 16 19 N -0.54 -15.28 10.44 -200.04 -2.09 -17.37 16 20 C 0.27 7.02 12.29 180.88 2.22 9.24 16 21 N -0.53 -15.29 10.44 -200.05 -2.09 -17.37 16 22 C 0.14 3.98 10.97 84.70 0.93 4.91 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.75 6.48 -2.39 -0.02 1.74 16 26 H 0.07 3.43 5.94 -2.39 -0.01 3.42 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.33 10.81 5.68 -89.70 -0.51 10.30 16 30 H 0.07 1.61 8.04 -2.38 -0.02 1.59 16 31 H 0.05 1.54 7.64 -2.39 -0.02 1.52 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.17 4.46 7.43 -2.91 -0.02 4.44 16 34 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.18 4.43 8.06 -2.92 -0.02 4.40 16 Total: -1.00 -60.51 290.87 2.38 -58.14 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.57 Total: 18.80 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 6.34 Total: -8.81 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -6.56 Total: -113.84 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -60.51 2.38 -58.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.646 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds