Wall clock time and date at job start Sun Mar 29 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 H 1.09006 * 109.47217 * 179.65509 * 3 2 1 5 5 C 1.50699 * 109.46931 * 299.65152 * 3 2 1 6 6 H 1.07999 * 120.00289 * 114.31944 * 5 3 2 7 7 C 1.37879 * 120.00355 * 294.31948 * 5 3 2 8 8 N 1.31516 * 119.99775 * 347.14908 * 7 5 3 9 9 Si 1.86798 * 120.00482 * 167.15456 * 7 5 3 10 10 H 1.48506 * 109.46814 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47104 * 119.99745 * 9 7 5 12 12 H 1.48494 * 109.47228 * 239.99946 * 9 7 5 13 13 N 1.46896 * 109.47075 * 59.65224 * 3 2 1 14 14 C 1.46899 * 111.00154 * 89.00061 * 13 3 2 15 15 H 1.08998 * 109.46755 * 329.10139 * 14 13 3 16 16 C 1.52997 * 109.47180 * 89.10037 * 14 13 3 17 17 C 1.50695 * 109.46976 * 209.10180 * 14 13 3 18 18 C 1.38601 * 120.80132 * 319.71798 * 17 14 13 19 19 N 1.32336 * 119.10218 * 179.71754 * 18 17 14 20 20 C 1.31795 * 120.82056 * 0.57301 * 19 18 17 21 21 N 1.31800 * 121.75181 * 359.69711 * 20 19 18 22 22 C 1.32331 * 120.81813 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47548 * 185.04325 * 1 2 3 24 24 H 1.08998 * 109.46879 * 305.04280 * 1 2 3 25 25 H 1.09001 * 109.46950 * 65.04203 * 1 2 3 26 26 H 1.09001 * 109.47434 * 239.99933 * 2 1 3 27 27 H 1.09004 * 109.47478 * 120.00170 * 2 1 3 28 28 H 0.97004 * 119.99859 * 1.76417 * 8 7 5 29 29 H 1.00903 * 110.99803 * 212.95108 * 13 3 2 30 30 H 1.09004 * 109.47072 * 180.02562 * 16 14 13 31 31 H 1.09003 * 109.47436 * 300.00238 * 16 14 13 32 32 H 1.08998 * 109.47193 * 60.00371 * 16 14 13 33 33 H 1.07995 * 120.44512 * 359.97438 * 18 17 14 34 34 H 1.07998 * 119.12304 * 179.72951 * 20 19 18 35 35 H 1.07998 * 120.44573 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1301 1.4424 0.0062 5 6 1.5448 2.1503 -1.2348 6 1 0.8499 2.9721 -1.1440 7 6 1.9787 1.7489 -2.4804 8 7 3.0027 0.9307 -2.5878 9 14 1.1122 2.3672 -4.0154 10 1 -0.0008 3.2699 -3.6259 11 1 2.0782 3.1108 -4.8636 12 1 0.5709 1.2131 -4.7771 13 7 1.5436 2.1374 1.1952 14 6 2.4699 1.9720 2.3232 15 1 2.9746 1.0094 2.2407 16 6 3.5079 3.0957 2.2997 17 6 1.7000 2.0263 3.6175 18 6 0.6675 2.9343 3.7916 19 7 0.0101 2.9491 4.9400 20 6 0.3340 2.1226 5.9141 21 7 1.3133 1.2498 5.7864 22 6 2.0114 1.1736 4.6648 23 1 -0.3634 -1.0237 0.0903 24 1 -0.3633 0.5901 0.8414 25 1 -0.3633 0.4336 -0.9317 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.4366 0.5894 -1.7902 29 1 1.3784 3.1141 1.0031 30 1 4.1956 2.9728 3.1364 31 1 4.0648 3.0565 1.3634 32 1 3.0032 4.0583 2.3822 33 1 0.4003 3.6177 2.9991 34 1 -0.2181 2.1612 6.8416 35 1 2.8124 0.4558 4.5665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:21 Heat of formation + Delta-G solvation = 33.560274 kcal Electronic energy + Delta-G solvation = -16723.940614 eV Core-core repulsion = 14142.516258 eV Total energy + Delta-G solvation = -2581.424356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87761 -37.30672 -34.38921 -33.54080 -31.62261 -30.57343 -28.48963 -25.55340 -24.63839 -24.23141 -23.44635 -21.04495 -19.34066 -17.61324 -17.39942 -16.88471 -15.18793 -14.62699 -14.39845 -13.89244 -13.75526 -13.54977 -13.37041 -13.18796 -12.82266 -12.34997 -12.20116 -11.68807 -11.26901 -11.13828 -10.83224 -10.66470 -10.54958 -10.27719 -10.16891 -10.01870 -9.79281 -9.23027 -9.09194 -8.69593 -8.27093 -7.56104 -6.44974 -4.13729 1.06736 1.21789 3.39988 3.42836 3.56429 3.91535 4.24417 4.34242 4.44984 4.74240 4.79961 5.07159 5.26108 5.29554 5.44910 5.50773 5.61643 5.88179 6.03328 6.17825 6.22018 6.32756 6.38083 6.53209 6.55249 6.88603 6.96626 7.07815 7.18395 7.40070 7.44582 7.75739 7.96569 8.18479 8.39491 8.48558 8.78924 9.56077 10.93050 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.006204 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.035506 B = 4512.372276 C = 4557.048891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.207 3.793 4 H -0.002 1.002 5 C -0.600 4.600 6 H 0.055 0.945 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 1.068 2.932 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.673 5.673 14 C 0.125 3.875 15 H 0.083 0.917 16 C -0.172 4.172 17 C -0.152 4.152 18 C 0.165 3.835 19 N -0.523 5.523 20 C 0.272 3.728 21 N -0.523 5.523 22 C 0.140 3.860 23 H 0.016 0.984 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.270 0.730 29 H 0.337 0.663 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.166 0.834 34 H 0.190 0.810 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 2.274 11.127 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.016 0.984 5 C -0.639 4.639 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.542 5.542 9 Si 0.897 3.103 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.304 5.304 14 C 0.013 3.987 15 H 0.102 0.898 16 C -0.230 4.230 17 C -0.157 4.157 18 C -0.001 4.001 19 N -0.236 5.236 20 C -0.016 4.016 21 N -0.236 5.236 22 C -0.026 4.026 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.206 0.794 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.198 1.717 10.507 10.871 hybrid contribution 1.153 0.491 0.604 1.391 sum -1.045 2.208 11.111 11.376 Atomic orbital electron populations 1.21417 0.96540 0.97656 1.02100 1.21490 0.96271 0.98280 0.98229 1.19242 0.92723 0.91232 0.86928 0.98426 1.21972 1.30848 1.19333 0.91723 0.92725 1.25678 0.95173 0.95717 1.01293 1.70761 1.18195 1.31914 1.33347 0.83565 0.75572 0.76066 0.75146 1.21424 1.21584 1.21254 1.60677 1.45083 1.18069 1.06550 1.20345 0.90874 0.99100 0.88399 0.89839 1.22450 0.99476 0.98763 1.02350 1.21836 0.98650 0.97262 0.97926 1.23022 0.88968 0.94621 0.93477 1.68413 1.28903 1.24486 1.01778 1.24815 0.91745 0.87440 0.97591 1.68366 1.07786 1.22094 1.25380 1.23059 0.96332 0.95403 0.87770 0.96443 0.93007 0.92566 0.92511 0.96322 0.91850 0.84422 0.92920 0.91387 0.92558 0.81673 0.79363 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.49 37.15 0.35 -2.19 16 2 C -0.10 -2.32 5.56 -26.74 -0.15 -2.47 16 3 C 0.21 4.67 1.72 -68.87 -0.12 4.55 16 4 H 0.00 -0.04 6.62 -51.93 -0.34 -0.39 16 5 C -0.60 -15.31 7.31 -34.44 -0.25 -15.56 16 6 H 0.05 1.41 7.65 -52.49 -0.40 1.01 16 7 C 0.03 0.72 5.15 -17.82 -0.09 0.62 16 8 N -0.91 -25.74 13.05 55.43 0.72 -25.01 16 9 Si 1.07 24.20 29.92 -169.99 -5.09 19.11 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.67 -12.53 4.64 -102.18 -0.47 -13.01 16 14 C 0.13 1.95 2.63 -68.87 -0.18 1.77 16 15 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 16 C -0.17 -2.43 9.14 37.16 0.34 -2.09 16 17 C -0.15 -2.20 4.98 -104.36 -0.52 -2.72 16 18 C 0.16 2.42 10.62 -17.20 -0.18 2.24 16 19 N -0.52 -7.69 10.44 -14.58 -0.15 -7.84 16 20 C 0.27 3.63 12.29 -92.15 -1.13 2.50 16 21 N -0.52 -7.41 10.44 -14.58 -0.15 -7.56 16 22 C 0.14 1.93 10.97 -17.20 -0.19 1.74 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 25 H 0.06 1.27 7.41 -51.93 -0.38 0.89 16 26 H 0.06 1.40 6.70 -51.93 -0.35 1.05 16 27 H 0.02 0.38 7.80 -51.93 -0.41 -0.02 16 28 H 0.27 7.64 6.29 -40.82 -0.26 7.38 16 29 H 0.34 6.23 7.49 -39.29 -0.29 5.94 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.08 7.81 -51.93 -0.41 0.68 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.17 2.28 7.53 -52.49 -0.40 1.89 16 34 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -28.35 290.24 -7.80 -36.15 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.91 Total: 5.39 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.12 Total: -11.61 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.06 Total: -53.42 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.35 -7.80 -36.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.712 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds