Wall clock time and date at job start Sun Mar 29 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 H 1.09006 * 109.47217 * 179.65509 * 3 2 1 5 5 C 1.50699 * 109.46931 * 299.65152 * 3 2 1 6 6 H 1.07999 * 120.00289 * 114.31944 * 5 3 2 7 7 C 1.37879 * 120.00355 * 294.31948 * 5 3 2 8 8 N 1.31516 * 119.99775 * 347.14908 * 7 5 3 9 9 Si 1.86798 * 120.00482 * 167.15456 * 7 5 3 10 10 H 1.48506 * 109.46814 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47104 * 119.99745 * 9 7 5 12 12 H 1.48494 * 109.47228 * 239.99946 * 9 7 5 13 13 N 1.46896 * 109.47075 * 59.65224 * 3 2 1 14 14 C 1.46899 * 111.00154 * 89.00061 * 13 3 2 15 15 H 1.08998 * 109.46755 * 329.10139 * 14 13 3 16 16 C 1.52997 * 109.47180 * 89.10037 * 14 13 3 17 17 C 1.50695 * 109.46976 * 209.10180 * 14 13 3 18 18 C 1.38601 * 120.80132 * 319.71798 * 17 14 13 19 19 N 1.32336 * 119.10218 * 179.71754 * 18 17 14 20 20 C 1.31795 * 120.82056 * 0.57301 * 19 18 17 21 21 N 1.31800 * 121.75181 * 359.69711 * 20 19 18 22 22 C 1.32331 * 120.81813 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47548 * 185.04325 * 1 2 3 24 24 H 1.08998 * 109.46879 * 305.04280 * 1 2 3 25 25 H 1.09001 * 109.46950 * 65.04203 * 1 2 3 26 26 H 1.09001 * 109.47434 * 239.99933 * 2 1 3 27 27 H 1.09004 * 109.47478 * 120.00170 * 2 1 3 28 28 H 0.97004 * 119.99859 * 1.76417 * 8 7 5 29 29 H 1.00903 * 110.99803 * 212.95108 * 13 3 2 30 30 H 1.09004 * 109.47072 * 180.02562 * 16 14 13 31 31 H 1.09003 * 109.47436 * 300.00238 * 16 14 13 32 32 H 1.08998 * 109.47193 * 60.00371 * 16 14 13 33 33 H 1.07995 * 120.44512 * 359.97438 * 18 17 14 34 34 H 1.07998 * 119.12304 * 179.72951 * 20 19 18 35 35 H 1.07998 * 120.44573 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1301 1.4424 0.0062 5 6 1.5448 2.1503 -1.2348 6 1 0.8499 2.9721 -1.1440 7 6 1.9787 1.7489 -2.4804 8 7 3.0027 0.9307 -2.5878 9 14 1.1122 2.3672 -4.0154 10 1 -0.0008 3.2699 -3.6259 11 1 2.0782 3.1108 -4.8636 12 1 0.5709 1.2131 -4.7771 13 7 1.5436 2.1374 1.1952 14 6 2.4699 1.9720 2.3232 15 1 2.9746 1.0094 2.2407 16 6 3.5079 3.0957 2.2997 17 6 1.7000 2.0263 3.6175 18 6 0.6675 2.9343 3.7916 19 7 0.0101 2.9491 4.9400 20 6 0.3340 2.1226 5.9141 21 7 1.3133 1.2498 5.7864 22 6 2.0114 1.1736 4.6648 23 1 -0.3634 -1.0237 0.0903 24 1 -0.3633 0.5901 0.8414 25 1 -0.3633 0.4336 -0.9317 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.4366 0.5894 -1.7902 29 1 1.3784 3.1141 1.0031 30 1 4.1956 2.9728 3.1364 31 1 4.0648 3.0565 1.3634 32 1 3.0032 4.0583 2.3822 33 1 0.4003 3.6177 2.9991 34 1 -0.2181 2.1612 6.8416 35 1 2.8124 0.4558 4.5665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:21 Heat of formation + Delta-G solvation = 16.961615 kcal Electronic energy + Delta-G solvation = -16724.660386 eV Core-core repulsion = 14142.516258 eV Total energy + Delta-G solvation = -2582.144128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.97188 -38.85212 -36.00071 -34.62450 -33.42412 -31.99073 -29.88223 -27.30798 -25.77685 -25.63921 -25.07538 -22.43242 -21.03637 -19.13441 -18.52212 -18.26288 -16.63871 -16.11800 -15.77296 -15.56281 -15.30224 -14.90392 -14.56310 -14.48556 -14.20932 -13.97797 -13.63356 -13.27421 -12.98386 -12.66824 -12.47651 -12.01549 -11.99280 -11.92938 -11.75731 -11.65727 -11.49406 -10.68710 -10.37273 -10.23276 -10.17671 -9.13433 -8.55761 -6.23834 -0.01384 0.12196 1.56223 1.62693 1.78886 2.58154 2.82926 3.22585 3.24733 3.29567 3.45506 3.72395 3.85915 3.98056 4.27741 4.36703 4.44462 4.53226 4.58577 4.71692 4.76274 4.87431 4.97347 5.11679 5.15535 5.23260 5.39105 5.47215 5.57115 5.68035 5.91819 6.00560 6.12772 6.53610 6.61970 6.84678 7.11855 7.53330 8.82719 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.006204 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.035506 B = 4512.372276 C = 4557.048891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.214 3.786 4 H -0.027 1.027 5 C -0.599 4.599 6 H 0.050 0.950 7 C -0.020 4.020 8 N -0.935 5.935 9 Si 1.107 2.893 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.669 5.669 14 C 0.131 3.869 15 H 0.077 0.923 16 C -0.164 4.164 17 C -0.159 4.159 18 C 0.159 3.841 19 N -0.537 5.537 20 C 0.273 3.727 21 N -0.533 5.533 22 C 0.142 3.858 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.338 0.662 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.169 0.831 34 H 0.222 0.778 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 2.586 12.410 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C 0.105 3.895 4 H -0.010 1.010 5 C -0.637 4.637 6 H 0.069 0.931 7 C -0.220 4.220 8 N -0.572 5.572 9 Si 0.932 3.068 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.299 5.299 14 C 0.019 3.981 15 H 0.095 0.905 16 C -0.222 4.222 17 C -0.163 4.163 18 C -0.006 4.006 19 N -0.250 5.250 20 C -0.015 4.015 21 N -0.246 5.246 22 C -0.024 4.024 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.186 0.814 34 H 0.238 0.762 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.023 2.041 11.817 12.367 hybrid contribution 1.402 0.400 0.324 1.493 sum -1.621 2.441 12.141 12.490 Atomic orbital electron populations 1.21304 0.95374 0.98829 1.01174 1.21389 0.97153 0.97775 0.97519 1.19003 0.91094 0.91705 0.87705 1.00970 1.22257 1.29783 1.18853 0.92837 0.93138 1.26837 0.95163 0.95586 1.04374 1.70867 1.19726 1.33775 1.32812 0.83038 0.75236 0.75973 0.72587 1.19696 1.21192 1.21124 1.60574 1.45834 1.17800 1.05720 1.20278 0.90760 0.99297 0.87769 0.90498 1.22347 0.99289 0.98614 1.01985 1.21622 0.99052 0.98174 0.97496 1.23134 0.89001 0.94701 0.93801 1.68476 1.29284 1.25221 1.02055 1.25503 0.91318 0.86383 0.98262 1.68473 1.08230 1.22509 1.25413 1.23411 0.96481 0.95144 0.87342 0.94488 0.92509 0.94493 0.95388 0.94795 0.93037 0.84353 0.90804 0.93646 0.91745 0.81406 0.76216 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 9.49 71.98 0.68 -3.84 16 2 C -0.10 -4.44 5.56 30.59 0.17 -4.27 16 3 C 0.21 9.73 1.72 44.17 0.08 9.80 16 4 H -0.03 -1.37 6.62 -2.38 -0.02 -1.38 16 5 C -0.60 -30.66 7.31 25.60 0.19 -30.47 16 6 H 0.05 2.59 7.65 -2.91 -0.02 2.56 16 7 C -0.02 -1.07 5.15 84.65 0.44 -0.63 16 8 N -0.93 -54.08 13.05 21.45 0.28 -53.80 16 9 Si 1.11 48.61 29.92 68.60 2.05 50.66 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.67 -24.47 4.64 -477.18 -2.21 -26.68 16 14 C 0.13 3.93 2.63 44.17 0.12 4.05 16 15 H 0.08 2.43 7.31 -2.39 -0.02 2.41 16 16 C -0.16 -4.47 9.14 71.98 0.66 -3.81 16 17 C -0.16 -4.31 4.98 -19.69 -0.10 -4.41 16 18 C 0.16 4.39 10.62 84.70 0.90 5.29 16 19 N -0.54 -14.65 10.44 -200.04 -2.09 -16.74 16 20 C 0.27 6.56 12.29 180.88 2.22 8.78 16 21 N -0.53 -13.72 10.44 -200.05 -2.09 -15.81 16 22 C 0.14 3.57 10.97 84.70 0.93 4.50 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 2.27 7.44 -2.39 -0.02 2.25 16 25 H 0.04 1.64 7.41 -2.39 -0.02 1.62 16 26 H 0.03 1.39 6.70 -2.39 -0.02 1.38 16 27 H 0.03 1.38 7.80 -2.38 -0.02 1.36 16 28 H 0.26 15.14 6.29 -92.71 -0.58 14.56 16 29 H 0.34 12.28 7.49 -89.69 -0.67 11.61 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.44 7.81 -2.39 -0.02 1.42 16 32 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 33 H 0.17 4.41 7.53 -2.91 -0.02 4.39 16 34 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -59.84 290.24 2.82 -57.02 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.59 Total: 20.36 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 6.28 Total: -15.00 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -6.11 Total: -113.03 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.05 Total: 50.66 kcal Total: -59.84 2.82 -57.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.982 kcal (2) G-P(sol) polarization free energy of solvation -59.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds