Wall clock time and date at job start Sun Mar 29 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47022 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47458 * 119.99529 * 9 7 5 12 12 H 1.48500 * 109.47184 * 239.99584 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.39712 * 119.99784 * 275.00282 * 13 3 2 15 15 C 1.39320 * 120.48875 * 179.72286 * 14 13 3 16 16 C 1.38489 * 118.35528 * 179.71093 * 15 14 13 17 17 C 1.38279 * 119.24202 * 0.57696 * 16 15 14 18 18 C 1.50698 * 119.53934 * 179.70188 * 17 16 15 19 19 N 1.46898 * 109.47213 * 94.97901 * 18 17 16 20 20 N 1.31852 * 120.92829 * 359.68421 * 17 16 15 21 21 C 1.31821 * 121.79699 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 29 29 H 1.07995 * 120.81862 * 359.97438 * 15 14 13 30 30 H 1.07994 * 120.38228 * 180.30203 * 16 15 14 31 31 H 1.08997 * 109.47152 * 214.98729 * 18 17 16 32 32 H 1.09008 * 109.46886 * 334.97909 * 18 17 16 33 33 H 1.00902 * 110.99863 * 180.02562 * 19 18 17 34 34 H 1.00903 * 111.00074 * 303.95903 * 19 18 17 35 35 H 1.08007 * 119.66795 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5190 -1.4628 12 1 6.4000 1.6156 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.3907 2.6850 1.3712 15 6 0.0094 3.3056 2.5589 16 6 -1.2494 3.8791 2.6267 17 6 -2.0845 3.8073 1.5270 18 6 -3.4582 4.4232 1.5958 19 7 -3.4142 5.7817 1.0386 20 7 -1.6958 3.2078 0.4188 21 6 -0.5044 2.6542 0.3098 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.8292 -0.0617 -2.9496 28 1 2.2720 2.1231 1.9978 29 1 0.6805 3.3422 3.4042 30 1 -1.5767 4.3728 3.5297 31 1 -4.1575 3.8168 1.0202 32 1 -3.7851 4.4669 2.6347 33 1 -4.3240 6.2166 1.0738 34 1 -2.7256 6.3455 1.5142 35 1 -0.2217 2.1717 -0.6142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:37 Heat of formation + Delta-G solvation = 32.237704 kcal Electronic energy + Delta-G solvation = -16503.895595 eV Core-core repulsion = 13922.413888 eV Total energy + Delta-G solvation = -2581.481707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82000 -36.66445 -34.39539 -32.91282 -31.90649 -30.62749 -29.20868 -26.66944 -24.44275 -23.38140 -22.70539 -21.10561 -19.67232 -17.36615 -16.52804 -15.82522 -15.60835 -15.04490 -14.83310 -14.42596 -13.83313 -13.56994 -13.47621 -12.86486 -12.63857 -12.41101 -11.93479 -11.78353 -11.38870 -11.33859 -10.97995 -10.83671 -10.46932 -10.21436 -9.83260 -9.61365 -9.13935 -8.98879 -8.79866 -8.60976 -8.49073 -6.63683 -6.21239 -4.30063 1.79318 2.02726 3.19364 3.27924 3.30504 4.17912 4.35021 4.42898 4.88286 4.92502 5.10768 5.17511 5.39439 5.49809 5.68401 5.84735 6.05421 6.09312 6.19773 6.32106 6.43978 6.58953 6.69102 6.84714 6.90241 7.12915 7.15923 7.22749 7.41798 7.49664 7.61214 7.75024 8.00047 8.22847 8.53398 8.72960 8.84111 9.37255 10.84268 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042381 B = 0.005703 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.512089 B = 4908.237045 C = 5051.074624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.269 3.731 4 H 0.042 0.958 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.713 5.713 14 C 0.192 3.808 15 C -0.187 4.187 16 C -0.117 4.117 17 C 0.029 3.971 18 C 0.129 3.871 19 N -0.842 5.842 20 N -0.428 5.428 21 C 0.024 3.976 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.102 0.898 27 H 0.265 0.735 28 H 0.391 0.609 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.337 0.663 34 H 0.338 0.662 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 4.900 8.128 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.167 3.833 4 H 0.060 0.940 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.334 5.334 14 C 0.079 3.921 15 C -0.218 4.218 16 C -0.138 4.138 17 C -0.111 4.111 18 C -0.002 4.002 19 N -0.372 5.372 20 N -0.136 5.136 21 C -0.141 4.141 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.224 0.776 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.373 4.298 6.357 11.358 hybrid contribution 1.636 0.249 1.915 2.530 sum -6.738 4.547 8.272 11.597 Atomic orbital electron populations 1.22195 0.98903 0.99477 1.00422 1.22042 0.92168 1.00195 1.02775 1.18838 0.94851 0.88879 0.80718 0.94020 1.21213 0.90579 1.38947 1.06328 0.92027 1.24871 0.98745 0.94653 0.95319 1.69867 1.35175 1.37622 1.09402 0.86386 0.84716 0.77818 0.78172 1.19775 1.20823 1.20791 1.45581 1.11603 1.58115 1.18118 1.19108 0.87847 0.90988 0.94124 1.20880 0.97923 1.05423 0.97559 1.21481 0.94074 0.99477 0.98779 1.20460 0.96878 1.03131 0.90610 1.20343 0.93414 0.89795 0.96667 1.58612 1.11409 1.03715 1.63501 1.67245 1.16111 1.05564 1.24695 1.22796 0.89492 1.02591 0.99238 0.93809 0.93069 0.94896 0.94594 0.88013 0.92486 0.77561 0.85957 0.86474 0.90136 0.95056 0.85028 0.84939 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.22 37.16 0.31 -2.76 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.32 2.20 -69.09 -0.15 6.17 16 4 H 0.04 1.08 6.51 -51.93 -0.34 0.75 16 5 C -0.53 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.72 11.29 55.43 0.63 -23.09 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.71 -14.34 5.18 -53.18 -0.28 -14.62 16 14 C 0.19 3.66 5.50 -83.63 -0.46 3.20 16 15 C -0.19 -3.06 10.05 -39.09 -0.39 -3.45 16 16 C -0.12 -1.76 9.71 -39.47 -0.38 -2.14 16 17 C 0.03 0.47 6.29 -82.57 -0.52 -0.05 16 18 C 0.13 1.67 7.09 -4.98 -0.04 1.64 16 19 N -0.84 -10.12 9.61 -11.41 -0.11 -10.23 16 20 N -0.43 -8.26 10.26 -9.30 -0.10 -8.36 16 21 C 0.02 0.49 7.92 -17.32 -0.14 0.35 16 22 H 0.04 0.87 5.39 -51.93 -0.28 0.59 16 23 H 0.05 1.03 6.36 -51.93 -0.33 0.70 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.39 7.29 8.57 -40.82 -0.35 6.94 16 29 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.33 8.04 -51.92 -0.42 -0.08 16 33 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 34 H 0.34 3.76 8.99 -39.29 -0.35 3.41 16 35 H 0.16 3.46 4.03 -52.48 -0.21 3.25 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -27.68 283.16 -7.52 -35.20 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -4.60 Total: 14.08 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.32 Total: -12.46 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.15 Total: -56.30 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.68 -7.52 -35.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.442 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds