Wall clock time and date at job start Sun Mar 29 2020 22:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47022 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47458 * 119.99529 * 9 7 5 12 12 H 1.48500 * 109.47184 * 239.99584 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.39712 * 119.99784 * 275.00282 * 13 3 2 15 15 C 1.39320 * 120.48875 * 179.72286 * 14 13 3 16 16 C 1.38489 * 118.35528 * 179.71093 * 15 14 13 17 17 C 1.38279 * 119.24202 * 0.57696 * 16 15 14 18 18 C 1.50698 * 119.53934 * 179.70188 * 17 16 15 19 19 N 1.46898 * 109.47213 * 94.97901 * 18 17 16 20 20 N 1.31852 * 120.92829 * 359.68421 * 17 16 15 21 21 C 1.31821 * 121.79699 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 29 29 H 1.07995 * 120.81862 * 359.97438 * 15 14 13 30 30 H 1.07994 * 120.38228 * 180.30203 * 16 15 14 31 31 H 1.08997 * 109.47152 * 214.98729 * 18 17 16 32 32 H 1.09008 * 109.46886 * 334.97909 * 18 17 16 33 33 H 1.00902 * 110.99863 * 180.02562 * 19 18 17 34 34 H 1.00903 * 111.00074 * 303.95903 * 19 18 17 35 35 H 1.08007 * 119.66795 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5190 -1.4628 12 1 6.4000 1.6156 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.3907 2.6850 1.3712 15 6 0.0094 3.3056 2.5589 16 6 -1.2494 3.8791 2.6267 17 6 -2.0845 3.8073 1.5270 18 6 -3.4582 4.4232 1.5958 19 7 -3.4142 5.7817 1.0386 20 7 -1.6958 3.2078 0.4188 21 6 -0.5044 2.6542 0.3098 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.8292 -0.0617 -2.9496 28 1 2.2720 2.1231 1.9978 29 1 0.6805 3.3422 3.4042 30 1 -1.5767 4.3728 3.5297 31 1 -4.1575 3.8168 1.0202 32 1 -3.7851 4.4669 2.6347 33 1 -4.3240 6.2166 1.0738 34 1 -2.7256 6.3455 1.5142 35 1 -0.2217 2.1717 -0.6142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:37 Heat of formation + Delta-G solvation = 12.081069 kcal Electronic energy + Delta-G solvation = -16504.769653 eV Core-core repulsion = 13922.413888 eV Total energy + Delta-G solvation = -2582.355765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20930 -38.24328 -35.65680 -34.51630 -33.52523 -32.12973 -30.68953 -28.35075 -25.79324 -24.99625 -24.25444 -22.42605 -21.37875 -19.09227 -17.83099 -17.38277 -17.11527 -16.51649 -16.23305 -15.90363 -15.18746 -15.04886 -14.86937 -14.23712 -14.04134 -13.86756 -13.58317 -13.27665 -13.18954 -12.82871 -12.75110 -12.41493 -12.09683 -12.03100 -11.60029 -11.29603 -10.95255 -10.54697 -10.24868 -10.17573 -9.50560 -8.21321 -8.11997 -6.33791 0.45691 0.67238 1.41505 1.43910 1.54334 2.36631 2.84294 3.03447 3.12060 3.65172 3.89908 4.05435 4.12950 4.28155 4.44771 4.52796 4.56512 4.67874 4.70079 4.86702 4.92320 5.00965 5.21517 5.26729 5.35060 5.38441 5.56235 5.63049 5.81957 5.94398 6.13394 6.30479 6.48340 6.71682 6.78784 7.09967 7.36949 7.40582 8.86765 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042381 B = 0.005703 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.512089 B = 4908.237045 C = 5051.074624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.280 3.720 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.172 3.828 15 C -0.175 4.175 16 C -0.108 4.108 17 C 0.028 3.972 18 C 0.130 3.870 19 N -0.856 5.856 20 N -0.455 5.455 21 C 0.001 3.999 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.398 0.602 29 H 0.151 0.849 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.355 0.645 34 H 0.345 0.655 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 6.059 10.440 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 N -0.341 5.341 14 C 0.061 3.939 15 C -0.206 4.206 16 C -0.128 4.128 17 C -0.113 4.113 18 C 0.000 4.000 19 N -0.389 5.389 20 N -0.164 5.164 21 C -0.163 4.163 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.981 5.472 8.682 13.637 hybrid contribution 1.661 0.005 1.256 2.082 sum -7.320 5.477 9.938 13.503 Atomic orbital electron populations 1.22019 0.96966 1.00236 1.00211 1.21858 0.93809 0.99496 1.01166 1.18427 0.93648 0.88982 0.81296 0.97489 1.21561 0.91868 1.38723 1.06425 0.91903 1.25651 1.02866 0.94405 0.95092 1.70001 1.36779 1.38335 1.09844 0.85409 0.79744 0.77795 0.78065 1.19052 1.20448 1.20852 1.45184 1.12537 1.59300 1.17124 1.19209 0.87234 0.92252 0.95192 1.21278 0.98836 1.03464 0.96986 1.21932 0.92914 0.98191 0.99783 1.21211 0.98467 1.01557 0.90051 1.20379 0.91068 0.89914 0.98677 1.58512 1.12888 1.03547 1.63952 1.67233 1.15931 1.06629 1.26600 1.22456 0.90587 1.04227 0.99014 0.93393 0.93984 0.93427 0.94709 0.90825 0.92517 0.76755 0.83177 0.81993 0.91012 0.91562 0.83072 0.84237 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.22 71.98 0.59 -5.06 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.66 16 3 C 0.28 13.64 2.20 44.24 0.10 13.74 16 4 H 0.01 0.41 6.51 -2.39 -0.02 0.39 16 5 C -0.55 -28.59 8.73 25.60 0.22 -28.36 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -50.52 11.29 21.45 0.24 -50.28 16 9 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.72 -29.12 5.18 -322.17 -1.67 -30.79 16 14 C 0.17 6.47 5.50 38.30 0.21 6.68 16 15 C -0.18 -5.22 10.05 22.59 0.23 -5.00 16 16 C -0.11 -2.80 9.71 22.34 0.22 -2.59 16 17 C 0.03 0.85 6.29 42.56 0.27 1.12 16 18 C 0.13 2.98 7.09 85.56 0.61 3.59 16 19 N -0.86 -18.15 9.61 -190.01 -1.83 -19.98 16 20 N -0.45 -17.47 10.26 -183.34 -1.88 -19.36 16 21 C 0.00 0.02 7.92 84.85 0.67 0.69 16 22 H 0.05 1.92 5.39 -2.39 -0.01 1.91 16 23 H 0.04 1.79 6.36 -2.39 -0.02 1.77 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 27 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.40 14.68 8.57 -92.71 -0.79 13.89 16 29 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.08 8.04 -2.38 -0.02 1.06 16 33 H 0.35 5.42 9.08 -89.69 -0.81 4.60 16 34 H 0.34 6.57 8.99 -89.69 -0.81 5.76 16 35 H 0.14 6.20 4.03 -2.91 -0.01 6.19 16 Total: -1.00 -61.03 283.16 -0.66 -61.69 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.28 Total: 34.15 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.73 Total: -19.33 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -5.14 Total: -120.41 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -61.03 -0.66 -61.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.769 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds