Wall clock time and date at job start Sun Mar 29 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 H 1.08995 * 109.47599 * 55.00049 * 3 2 1 5 5 C 1.50706 * 109.46759 * 174.99693 * 3 2 1 6 6 H 1.08003 * 119.99490 * 120.00384 * 5 3 2 7 7 C 1.37872 * 120.00408 * 299.99538 * 5 3 2 8 8 N 1.31509 * 120.00223 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99828 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46731 * 89.99642 * 9 7 5 11 11 H 1.48497 * 109.47138 * 209.99520 * 9 7 5 12 12 H 1.48499 * 109.47095 * 330.00009 * 9 7 5 13 13 N 1.46500 * 109.47352 * 294.99538 * 3 2 1 14 14 C 1.39700 * 119.99824 * 84.99779 * 13 3 2 15 15 C 1.39309 * 120.49471 * 179.97438 * 14 13 3 16 16 C 1.38491 * 118.36202 * 179.97438 * 15 14 13 17 17 C 1.38270 * 119.24255 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.54007 * 180.02562 * 17 16 15 19 19 N 1.46894 * 109.47701 * 94.97700 * 18 17 16 20 20 N 1.31854 * 120.92718 * 359.97438 * 17 16 15 21 21 C 1.31815 * 121.80007 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47543 * 300.00187 * 1 2 3 23 23 H 1.09003 * 109.47208 * 60.00009 * 1 2 3 24 24 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47196 * 239.99794 * 2 1 3 26 26 H 1.09003 * 109.46727 * 119.99766 * 2 1 3 27 27 H 0.97007 * 119.99914 * 180.02562 * 8 7 5 28 28 H 0.97004 * 119.99872 * 265.01040 * 13 3 2 29 29 H 1.08007 * 120.81789 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.38005 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47556 * 214.98198 * 18 17 16 32 32 H 1.09003 * 109.47210 * 334.97565 * 18 17 16 33 33 H 1.00896 * 111.00806 * 180.02562 * 19 18 17 34 34 H 1.00905 * 110.99732 * 303.95762 * 19 18 17 35 35 H 1.08001 * 119.67469 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4538 0.8804 1.3364 9 14 3.0962 0.1090 2.5703 10 1 2.8754 -1.3271 2.2635 11 1 3.7935 0.2349 3.8753 12 1 1.7875 0.8074 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.3906 2.6850 -1.3713 15 6 0.0117 3.3110 -2.5567 16 6 -1.2497 3.8785 -2.6269 17 6 -2.0849 3.8065 -1.5273 18 6 -3.4590 4.4212 -1.5965 19 7 -4.4376 3.3921 -1.9721 20 7 -1.6963 3.2067 -0.4193 21 6 -0.5048 2.6537 -0.3099 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.8769 0.4820 2.1131 28 1 2.2720 2.1230 -1.9978 29 1 0.6847 3.3521 -3.4004 30 1 -1.5769 4.3724 -3.5299 31 1 -3.7219 4.8343 -0.6226 32 1 -3.4642 5.2167 -2.3418 33 1 -5.3676 3.7797 -2.0257 34 1 -4.1804 2.9486 -2.8412 35 1 -0.2218 2.1716 0.6141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:40 Heat of formation + Delta-G solvation = 41.090763 kcal Electronic energy + Delta-G solvation = -16613.529024 eV Core-core repulsion = 14032.431214 eV Total energy + Delta-G solvation = -2581.097810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98480 -36.94718 -34.51570 -32.94840 -32.17616 -31.00817 -29.43203 -27.09879 -24.54898 -23.44528 -22.64744 -21.28283 -20.02123 -17.64543 -16.61517 -16.03941 -15.83560 -15.31034 -14.92976 -14.57067 -14.09557 -13.68986 -13.42915 -13.06016 -12.90706 -12.56885 -12.24289 -12.14219 -11.89641 -11.43643 -11.14325 -10.88433 -10.72239 -10.19956 -9.81716 -9.57223 -9.32565 -9.10121 -8.94545 -8.74312 -8.67926 -6.82237 -6.27697 -4.31013 1.65683 1.88781 3.16787 3.28228 3.29589 4.11707 4.21738 4.23343 4.75374 4.81937 5.03984 5.07281 5.27854 5.37165 5.57490 5.69779 5.78005 5.84499 5.91946 6.00794 6.07706 6.41249 6.43916 6.50040 6.59040 6.67837 6.73787 7.02154 7.10580 7.15167 7.36015 7.40733 7.81161 8.28420 8.40666 8.61782 8.73822 9.31650 10.84518 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042046 B = 0.006445 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.778073 B = 4343.105170 C = 4649.847833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.144 4.144 3 C 0.244 3.756 4 H 0.040 0.960 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.262 1.262 13 N -0.705 5.705 14 C 0.190 3.810 15 C -0.180 4.180 16 C -0.115 4.115 17 C 0.033 3.967 18 C 0.127 3.873 19 N -0.842 5.842 20 N -0.427 5.427 21 C 0.020 3.980 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.268 0.732 28 H 0.397 0.603 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.338 0.662 34 H 0.338 0.662 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.644 3.873 -6.928 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.183 4.183 3 C 0.140 3.860 4 H 0.058 0.942 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.187 1.187 13 N -0.327 5.327 14 C 0.078 3.922 15 C -0.211 4.211 16 C -0.137 4.137 17 C -0.107 4.107 18 C -0.003 4.003 19 N -0.373 5.373 20 N -0.136 5.136 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.232 0.768 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.750 3.344 -5.227 15.085 hybrid contribution 0.421 0.058 -1.169 1.243 sum -13.329 3.401 -6.395 15.170 Atomic orbital electron populations 1.22226 0.97414 1.00485 1.01473 1.22398 0.93941 1.00352 1.01559 1.19179 0.96178 0.88192 0.82498 0.94199 1.20993 0.88472 1.39893 1.07919 0.90208 1.24854 0.94894 0.95108 0.97680 1.69863 1.08725 1.44241 1.29829 0.86891 0.80723 0.79994 0.80993 1.20142 1.22009 1.18689 1.45187 1.11842 1.58188 1.17523 1.19087 0.87682 0.91193 0.94257 1.20906 0.97885 1.04753 0.97576 1.21520 0.94076 0.99425 0.98632 1.20494 0.96373 1.03074 0.90712 1.20357 0.88037 0.91272 1.00663 1.58613 1.04727 1.34012 1.39900 1.67232 1.15510 1.05409 1.25400 1.22713 0.89660 1.03120 0.99049 0.92879 0.92407 0.94022 0.91867 0.92569 0.92179 0.76792 0.85635 0.86220 0.90066 0.94882 0.84932 0.84943 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.22 37.15 0.31 -2.60 16 2 C -0.14 -2.99 5.11 -26.74 -0.14 -3.12 16 3 C 0.24 5.39 1.79 -69.08 -0.12 5.27 16 4 H 0.04 0.93 5.57 -51.93 -0.29 0.64 16 5 C -0.53 -14.04 9.31 -34.44 -0.32 -14.36 16 6 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 7 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.88 20.86 24.41 -169.99 -4.15 16.71 16 10 H -0.27 -6.31 6.83 56.52 0.39 -5.93 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -5.90 6.53 56.52 0.37 -5.54 16 13 N -0.71 -13.51 5.18 -53.18 -0.28 -13.79 16 14 C 0.19 3.40 5.50 -83.63 -0.46 2.94 16 15 C -0.18 -2.77 10.05 -39.09 -0.39 -3.16 16 16 C -0.12 -1.62 9.71 -39.48 -0.38 -2.00 16 17 C 0.03 0.51 6.29 -82.57 -0.52 -0.01 16 18 C 0.13 1.55 7.09 -4.98 -0.04 1.51 16 19 N -0.84 -9.32 9.61 -11.41 -0.11 -9.43 16 20 N -0.43 -7.75 10.26 -9.30 -0.10 -7.84 16 21 C 0.02 0.37 7.92 -17.32 -0.14 0.23 16 22 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 23 H 0.06 1.05 5.39 -51.93 -0.28 0.77 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.23 3.21 -51.93 -0.17 1.07 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.40 7.18 8.57 -40.82 -0.35 6.83 16 29 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.33 8.04 -51.93 -0.42 -0.09 16 33 H 0.34 2.81 9.08 -39.29 -0.36 2.45 16 34 H 0.34 3.43 8.99 -39.29 -0.35 3.08 16 35 H 0.16 3.09 4.03 -52.49 -0.21 2.88 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -29.22 276.40 -6.46 -35.68 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.47 Total: 12.91 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.30 Total: -13.25 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.29 Total: -56.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.22 -6.46 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.773 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds