Wall clock time and date at job start Sun Mar 29 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 H 1.08995 * 109.47599 * 55.00049 * 3 2 1 5 5 C 1.50706 * 109.46759 * 174.99693 * 3 2 1 6 6 H 1.08003 * 119.99490 * 120.00384 * 5 3 2 7 7 C 1.37872 * 120.00408 * 299.99538 * 5 3 2 8 8 N 1.31509 * 120.00223 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99828 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46731 * 89.99642 * 9 7 5 11 11 H 1.48497 * 109.47138 * 209.99520 * 9 7 5 12 12 H 1.48499 * 109.47095 * 330.00009 * 9 7 5 13 13 N 1.46500 * 109.47352 * 294.99538 * 3 2 1 14 14 C 1.39700 * 119.99824 * 84.99779 * 13 3 2 15 15 C 1.39309 * 120.49471 * 179.97438 * 14 13 3 16 16 C 1.38491 * 118.36202 * 179.97438 * 15 14 13 17 17 C 1.38270 * 119.24255 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.54007 * 180.02562 * 17 16 15 19 19 N 1.46894 * 109.47701 * 94.97700 * 18 17 16 20 20 N 1.31854 * 120.92718 * 359.97438 * 17 16 15 21 21 C 1.31815 * 121.80007 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47543 * 300.00187 * 1 2 3 23 23 H 1.09003 * 109.47208 * 60.00009 * 1 2 3 24 24 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47196 * 239.99794 * 2 1 3 26 26 H 1.09003 * 109.46727 * 119.99766 * 2 1 3 27 27 H 0.97007 * 119.99914 * 180.02562 * 8 7 5 28 28 H 0.97004 * 119.99872 * 265.01040 * 13 3 2 29 29 H 1.08007 * 120.81789 * 0.02562 * 15 14 13 30 30 H 1.08002 * 120.38005 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47556 * 214.98198 * 18 17 16 32 32 H 1.09003 * 109.47210 * 334.97565 * 18 17 16 33 33 H 1.00896 * 111.00806 * 180.02562 * 19 18 17 34 34 H 1.00905 * 110.99732 * 303.95762 * 19 18 17 35 35 H 1.08001 * 119.67469 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4538 0.8804 1.3364 9 14 3.0962 0.1090 2.5703 10 1 2.8754 -1.3271 2.2635 11 1 3.7935 0.2349 3.8753 12 1 1.7875 0.8074 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.3906 2.6850 -1.3713 15 6 0.0117 3.3110 -2.5567 16 6 -1.2497 3.8785 -2.6269 17 6 -2.0849 3.8065 -1.5273 18 6 -3.4590 4.4212 -1.5965 19 7 -4.4376 3.3921 -1.9721 20 7 -1.6963 3.2067 -0.4193 21 6 -0.5048 2.6537 -0.3099 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 5.8769 0.4820 2.1131 28 1 2.2720 2.1230 -1.9978 29 1 0.6847 3.3521 -3.4004 30 1 -1.5769 4.3724 -3.5299 31 1 -3.7219 4.8343 -0.6226 32 1 -3.4642 5.2167 -2.3418 33 1 -5.3676 3.7797 -2.0257 34 1 -4.1804 2.9486 -2.8412 35 1 -0.2218 2.1716 0.6141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:40 Heat of formation + Delta-G solvation = 17.974386 kcal Electronic energy + Delta-G solvation = -16614.531425 eV Core-core repulsion = 14032.431214 eV Total energy + Delta-G solvation = -2582.100211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27944 -38.44505 -35.67323 -34.55103 -33.84576 -32.33081 -30.85759 -28.70485 -25.76978 -24.86997 -24.27637 -22.51614 -21.59594 -19.39927 -17.86189 -17.63597 -17.22093 -16.71554 -16.22188 -15.77883 -15.63162 -15.05417 -14.80176 -14.56362 -14.19950 -13.94812 -13.76277 -13.62196 -13.39930 -12.88964 -12.75046 -12.42695 -12.28654 -11.96752 -11.42370 -11.29010 -11.17883 -10.77378 -10.32327 -10.22510 -9.50888 -8.38826 -8.23350 -6.45080 0.42114 0.62714 1.28769 1.35361 1.43840 2.25208 2.66243 2.95809 3.01442 3.60567 3.87347 4.01971 4.08798 4.20520 4.26638 4.29170 4.36519 4.54893 4.64833 4.73590 4.81693 4.91458 4.99976 5.07727 5.16545 5.25410 5.32621 5.46191 5.48908 5.77880 6.02126 6.29997 6.50669 6.60646 6.71284 6.94616 7.22717 7.34504 8.77133 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042046 B = 0.006445 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.778073 B = 4343.105170 C = 4649.847833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.254 3.746 4 H 0.030 0.970 5 C -0.535 4.535 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.938 5.938 9 Si 0.939 3.061 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.247 1.247 13 N -0.713 5.713 14 C 0.170 3.830 15 C -0.172 4.172 16 C -0.107 4.107 17 C 0.033 3.967 18 C 0.129 3.871 19 N -0.854 5.854 20 N -0.452 5.452 21 C 0.000 4.000 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.270 0.730 28 H 0.400 0.600 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.354 0.646 34 H 0.345 0.655 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 4.302 -8.160 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.149 3.851 4 H 0.047 0.953 5 C -0.573 4.573 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.577 5.577 9 Si 0.766 3.234 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.171 1.171 13 N -0.337 5.337 14 C 0.061 3.939 15 C -0.203 4.203 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.002 4.002 19 N -0.387 5.387 20 N -0.161 5.161 21 C -0.163 4.163 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.519 3.782 -6.477 18.142 hybrid contribution 1.177 0.068 -0.930 1.501 sum -15.342 3.851 -7.406 17.466 Atomic orbital electron populations 1.22102 0.95194 1.01666 1.01482 1.22283 0.95827 0.98860 1.00924 1.18826 0.93149 0.89415 0.83747 0.95267 1.21287 0.90758 1.38488 1.06738 0.93509 1.25636 0.95812 0.95823 1.00072 1.69996 1.10606 1.46180 1.30914 0.85990 0.79651 0.79895 0.77871 1.18772 1.22301 1.17123 1.44861 1.12852 1.59496 1.16533 1.19179 0.86966 0.92391 0.95370 1.21279 0.98775 1.03089 0.97110 1.21938 0.92924 0.98265 0.99637 1.21200 0.97922 1.01471 0.90213 1.20384 0.86440 0.91959 1.01384 1.58522 1.05502 1.34154 1.40523 1.67244 1.15383 1.06418 1.27083 1.22510 0.90463 1.04371 0.98938 0.92985 0.92402 0.92110 0.91976 0.93643 0.92124 0.76482 0.83339 0.82068 0.90952 0.91723 0.83095 0.84218 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.22 71.98 0.59 -4.57 16 2 C -0.14 -5.73 5.11 30.59 0.16 -5.57 16 3 C 0.25 11.32 1.79 44.25 0.08 11.40 16 4 H 0.03 1.38 5.57 -2.39 -0.01 1.37 16 5 C -0.53 -28.89 9.31 25.60 0.24 -28.66 16 6 H 0.05 2.77 7.98 -2.91 -0.02 2.74 16 7 C 0.03 1.45 5.45 84.65 0.46 1.91 16 8 N -0.94 -56.42 13.96 21.44 0.30 -56.12 16 9 Si 0.94 43.31 24.41 68.60 1.67 44.99 16 10 H -0.26 -11.46 6.83 99.48 0.68 -10.78 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 13 N -0.71 -27.28 5.18 -322.16 -1.67 -28.95 16 14 C 0.17 5.91 5.50 38.30 0.21 6.12 16 15 C -0.17 -4.78 10.05 22.59 0.23 -4.56 16 16 C -0.11 -2.57 9.71 22.34 0.22 -2.35 16 17 C 0.03 0.91 6.29 42.56 0.27 1.18 16 18 C 0.13 2.68 7.09 85.56 0.61 3.29 16 19 N -0.85 -16.07 9.61 -190.02 -1.83 -17.90 16 20 N -0.45 -15.74 10.26 -183.34 -1.88 -17.63 16 21 C 0.00 0.01 7.92 84.85 0.67 0.69 16 22 H 0.05 1.83 6.36 -2.39 -0.02 1.81 16 23 H 0.06 2.03 5.39 -2.39 -0.01 2.02 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 1.94 3.21 -2.39 -0.01 1.94 16 27 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 28 H 0.40 14.53 8.57 -92.71 -0.79 13.74 16 29 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 0.96 8.04 -2.39 -0.02 0.94 16 33 H 0.35 4.71 9.08 -89.70 -0.81 3.90 16 34 H 0.34 5.74 8.99 -89.69 -0.81 4.93 16 35 H 0.14 5.57 4.03 -2.91 -0.01 5.56 16 Total: -1.00 -64.22 276.40 -1.03 -65.25 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -1.36 Total: 31.48 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.73 Total: -21.13 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.08 Total: -120.59 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.67 Total: 44.99 kcal Total: -64.22 -1.03 -65.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.227 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds