Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 H 1.09001 * 109.47261 * 57.10396 * 3 2 1 5 5 C 1.50704 * 109.46893 * 177.09990 * 3 2 1 6 6 H 1.07995 * 120.00255 * 114.46674 * 5 3 2 7 7 C 1.37875 * 120.00134 * 294.46096 * 5 3 2 8 8 N 1.31513 * 120.00324 * 169.31866 * 7 5 3 9 9 Si 1.86802 * 120.00168 * 349.31643 * 7 5 3 10 10 H 1.48502 * 109.47326 * 271.57664 * 9 7 5 11 11 H 1.48506 * 109.46722 * 31.57219 * 9 7 5 12 12 H 1.48498 * 109.47469 * 151.57290 * 9 7 5 13 13 N 1.46500 * 109.47176 * 297.09603 * 3 2 1 14 14 C 1.39702 * 119.99465 * 98.16387 * 13 3 2 15 15 C 1.39317 * 120.49632 * 5.19479 * 14 13 3 16 16 C 1.38495 * 118.35441 * 179.71398 * 15 14 13 17 17 C 1.38268 * 119.24561 * 0.58157 * 16 15 14 18 18 N 1.31858 * 120.92745 * 359.67533 * 17 16 15 19 19 C 1.31812 * 121.79839 * 0.02816 * 18 17 16 20 20 C 1.50701 * 119.67084 * 180.02562 * 19 18 17 21 21 N 1.46898 * 109.47412 * 269.97724 * 20 19 18 22 22 H 1.09004 * 109.47013 * 305.48489 * 1 2 3 23 23 H 1.08996 * 109.47057 * 65.48782 * 1 2 3 24 24 H 1.09004 * 109.46819 * 185.49062 * 1 2 3 25 25 H 1.08993 * 109.47587 * 239.99906 * 2 1 3 26 26 H 1.08999 * 109.47555 * 119.99704 * 2 1 3 27 27 H 0.96997 * 120.00201 * 180.02562 * 8 7 5 28 28 H 0.96992 * 120.00289 * 278.16341 * 13 3 2 29 29 H 1.07999 * 120.82060 * 359.97438 * 15 14 13 30 30 H 1.08004 * 120.37460 * 180.25586 * 16 15 14 31 31 H 1.08000 * 119.54027 * 179.70440 * 17 16 15 32 32 H 1.09002 * 109.46786 * 29.97946 * 20 19 18 33 33 H 1.09000 * 109.47015 * 149.97420 * 20 19 18 34 34 H 1.00903 * 110.99662 * 56.04197 * 21 20 19 35 35 H 1.00898 * 111.00165 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6348 1.9711 0.8629 5 6 3.5452 1.4431 0.0719 6 1 4.1254 1.8163 -0.7590 7 6 4.1818 0.9674 1.1986 8 7 5.4820 0.7704 1.1855 9 14 3.1975 0.6027 2.7438 10 1 3.1078 1.8301 3.5748 11 1 1.8312 0.1591 2.3670 12 1 3.8708 -0.4710 3.5177 13 7 1.6095 2.1126 -1.2296 14 6 0.4777 2.9315 -1.2193 15 6 -0.1865 3.2046 -0.0255 16 6 -1.3003 4.0267 -0.0657 17 6 -1.7207 4.5357 -1.2806 18 7 -1.0731 4.2539 -2.3940 19 6 -0.0055 3.4808 -2.3999 20 6 0.6982 3.1906 -3.7006 21 7 0.1218 1.9852 -4.3109 22 1 -0.3633 0.5966 0.8368 23 1 -0.3633 0.4263 -0.9350 24 1 -0.3633 -1.0230 0.0983 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 5.9298 0.4354 1.9780 28 1 2.1104 1.9878 -2.0508 29 1 0.1611 2.7889 0.9087 30 1 -1.8375 4.2633 0.8410 31 1 -2.5915 5.1735 -1.3180 32 1 0.5736 4.0358 -4.3775 33 1 1.7596 3.0302 -3.5114 34 1 -0.8744 2.0847 -4.4370 35 1 0.5775 1.7691 -5.1848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = 36.980709 kcal Electronic energy + Delta-G solvation = -16942.996396 eV Core-core repulsion = 14361.720360 eV Total energy + Delta-G solvation = -2581.276035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92707 -36.59136 -34.69352 -32.91745 -31.76548 -31.13159 -29.05635 -26.92040 -25.27620 -23.06061 -22.17384 -21.34294 -19.75407 -17.79676 -16.35702 -16.22241 -15.84249 -15.13669 -14.96227 -14.43226 -13.93205 -13.55558 -13.14557 -13.05732 -12.77034 -12.47455 -12.37323 -11.88960 -11.84354 -11.25008 -11.10977 -11.00937 -10.81072 -10.15437 -9.85543 -9.46097 -9.28766 -9.03457 -8.98032 -8.62436 -8.52324 -6.75178 -6.25373 -4.25155 1.64834 2.01756 3.17620 3.25626 3.29107 4.20126 4.26489 4.29507 4.71256 5.02656 5.05736 5.13688 5.30411 5.58364 5.64907 5.78441 5.88109 5.94224 5.98712 6.10975 6.16093 6.43682 6.56077 6.64161 6.70277 6.80508 6.87973 7.10302 7.21184 7.24771 7.43751 7.54962 7.88726 8.36455 8.48952 8.56562 8.78977 9.36341 10.87228 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.008306 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.901129 B = 3370.174620 C = 3719.827754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.245 3.755 4 H 0.038 0.962 5 C -0.535 4.535 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.857 3.143 10 H -0.277 1.277 11 H -0.243 1.243 12 H -0.285 1.285 13 N -0.697 5.697 14 C 0.218 3.782 15 C -0.173 4.173 16 C -0.118 4.118 17 C 0.004 3.996 18 N -0.444 5.444 19 C 0.027 3.973 20 C 0.125 3.875 21 N -0.841 5.841 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.267 0.733 28 H 0.399 0.601 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.342 0.658 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 2.934 -4.550 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.141 3.859 4 H 0.055 0.945 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.684 3.316 10 H -0.203 1.203 11 H -0.167 1.167 12 H -0.211 1.211 13 N -0.319 5.319 14 C 0.104 3.896 15 C -0.204 4.204 16 C -0.138 4.138 17 C -0.156 4.156 18 N -0.153 5.153 19 C -0.119 4.119 20 C -0.006 4.006 21 N -0.371 5.371 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.235 0.765 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.254 2.709 -4.382 12.378 hybrid contribution -0.103 0.025 0.794 0.801 sum -11.358 2.735 -3.588 12.221 Atomic orbital electron populations 1.21840 0.97898 0.99799 1.01031 1.22436 0.93520 0.99989 1.02001 1.19095 0.95297 0.88343 0.83169 0.94478 1.21062 0.88606 1.43516 1.04150 0.90456 1.24831 0.94767 0.94189 0.98548 1.69911 1.08867 1.44229 1.29497 0.87379 0.82029 0.78628 0.83610 1.20296 1.16721 1.21070 1.45182 1.25458 1.47696 1.13557 1.18699 0.87900 0.89412 0.93608 1.21203 0.98277 1.03277 0.97613 1.21803 0.96358 0.96690 0.98998 1.22047 1.01425 1.04056 0.88040 1.67084 1.05852 1.11186 1.31137 1.20362 0.96655 1.01519 0.93337 1.20298 0.97527 0.91194 0.91567 1.58680 1.08874 1.38085 1.31494 0.93907 0.92918 0.94368 0.92306 0.91524 0.92342 0.76458 0.84957 0.85834 0.84104 0.94265 0.90238 0.84592 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.75 37.16 0.33 -2.37 16 2 C -0.14 -2.92 4.93 -26.73 -0.13 -3.06 16 3 C 0.25 5.41 1.76 -69.08 -0.12 5.28 16 4 H 0.04 0.84 4.51 -51.93 -0.23 0.60 16 5 C -0.54 -14.11 9.24 -34.44 -0.32 -14.43 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 8 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 9 Si 0.86 19.85 25.85 -169.99 -4.40 15.45 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.24 -5.19 5.13 56.52 0.29 -4.90 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.70 -13.68 4.73 -53.17 -0.25 -13.93 16 14 C 0.22 3.99 5.53 -83.63 -0.46 3.53 16 15 C -0.17 -3.04 8.28 -39.09 -0.32 -3.36 16 16 C -0.12 -1.77 10.10 -39.48 -0.40 -2.17 16 17 C 0.00 0.06 11.18 -17.53 -0.20 -0.13 16 18 N -0.44 -7.44 10.27 -9.31 -0.10 -7.53 16 19 C 0.03 0.45 6.31 -82.36 -0.52 -0.07 16 20 C 0.13 1.82 6.69 -4.98 -0.03 1.79 16 21 N -0.84 -10.93 9.61 -11.41 -0.11 -11.04 16 22 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 23 H 0.05 0.97 7.13 -51.93 -0.37 0.60 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.44 4.44 -51.93 -0.23 1.21 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 28 H 0.40 7.65 6.71 -40.82 -0.27 7.38 16 29 H 0.13 2.37 5.59 -52.49 -0.29 2.08 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.17 6.47 -51.93 -0.34 0.83 16 34 H 0.34 4.32 8.99 -39.29 -0.35 3.96 16 35 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 LS Contribution 279.08 15.07 4.21 4.21 Total: -1.00 -28.79 279.08 -6.76 -35.56 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -4.61 Total: 15.31 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.28 Total: -12.88 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.32 Total: -57.65 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.40 Total: 15.45 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.79 -6.76 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.536 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds