Wall clock time and date at job start Sun Mar 29 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 H 1.08995 * 109.46903 * 55.10014 * 3 2 1 5 5 C 1.50705 * 109.47364 * 175.10021 * 3 2 1 6 6 H 1.07994 * 120.00109 * 120.00325 * 5 3 2 7 7 C 1.37876 * 119.99586 * 300.00117 * 5 3 2 8 8 N 1.31514 * 120.00392 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99761 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47448 * 59.99382 * 9 7 5 11 11 H 1.48504 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46803 * 299.99423 * 9 7 5 13 13 N 1.46898 * 109.47099 * 295.09750 * 3 2 1 14 14 C 1.46901 * 110.99872 * 154.21139 * 13 3 2 15 15 C 1.53005 * 109.47219 * 185.20276 * 14 13 3 16 16 C 1.50695 * 109.47408 * 180.02562 * 15 14 13 17 17 C 1.38618 * 120.44904 * 124.97656 * 16 15 14 18 18 C 1.38575 * 118.40434 * 180.02562 * 17 16 15 19 19 N 1.32347 * 119.10159 * 0.02562 * 18 17 16 20 20 C 1.31779 * 120.81855 * 359.97438 * 19 18 17 21 21 N 1.31808 * 121.76000 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47183 * 300.45256 * 1 2 3 23 23 H 1.09005 * 109.47058 * 60.45022 * 1 2 3 24 24 H 1.09001 * 109.47197 * 180.45215 * 1 2 3 25 25 H 1.09000 * 109.47376 * 239.99877 * 2 1 3 26 26 H 1.09002 * 109.47065 * 120.00082 * 2 1 3 27 27 H 0.97002 * 120.00446 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00193 * 278.17290 * 13 3 2 29 29 H 1.09007 * 109.47163 * 65.20817 * 14 13 3 30 30 H 1.08994 * 109.47683 * 305.20843 * 14 13 3 31 31 H 1.09001 * 109.47001 * 60.00344 * 15 14 13 32 32 H 1.09001 * 109.46872 * 300.00793 * 15 14 13 33 33 H 1.08006 * 120.79995 * 0.05047 * 17 16 15 34 34 H 1.07999 * 120.45200 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.12142 * 180.28276 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8428 5 6 3.5422 1.4442 0.1214 6 1 4.1462 1.8892 -0.6554 7 6 4.1453 0.8776 1.2242 8 7 3.4097 0.3361 2.1704 9 14 6.0072 0.8804 1.3750 10 1 6.5017 2.2805 1.3753 11 1 6.4020 0.2161 2.6431 12 1 6.5978 0.1469 0.2267 13 7 1.6494 2.1000 -1.2542 14 6 1.5527 3.5551 -1.0778 15 6 1.0203 4.1905 -2.3638 16 6 0.9217 5.6834 -2.1832 17 6 1.5552 6.5415 -3.0685 18 6 1.4369 7.9066 -2.8621 19 7 0.7283 8.3430 -1.8330 20 6 0.1396 7.4973 -1.0115 21 7 0.2301 6.1928 -1.1767 22 1 -0.3633 0.5208 0.8859 23 1 -0.3633 0.5068 -0.8940 24 1 -0.3634 -1.0276 0.0081 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8340 -0.0622 2.9465 28 1 2.2894 1.8676 -1.9989 29 1 2.5396 3.9604 -0.8540 30 1 0.8737 3.7771 -0.2547 31 1 0.0334 3.7854 -2.5877 32 1 1.6994 3.9685 -3.1870 33 1 2.1269 6.1554 -3.8996 34 1 1.9166 8.6051 -3.5318 35 1 -0.4359 7.8835 -0.1832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:17 Heat of formation + Delta-G solvation = 32.207917 kcal Electronic energy + Delta-G solvation = -16072.389946 eV Core-core repulsion = 13490.906947 eV Total energy + Delta-G solvation = -2581.482999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96251 -36.52902 -34.61574 -32.87760 -32.13239 -31.14503 -28.78152 -26.12492 -24.43384 -23.69015 -22.47267 -21.08879 -19.46408 -17.50835 -16.75438 -16.66794 -15.47972 -15.04463 -14.82685 -14.22993 -14.00485 -13.67014 -13.04610 -12.97889 -12.80829 -11.98344 -11.67286 -11.35964 -11.12876 -11.01096 -10.88366 -10.72738 -10.57751 -10.44043 -10.10912 -9.67011 -9.57325 -9.43411 -9.13901 -9.05125 -8.37784 -7.27812 -5.99750 -4.12899 0.91468 1.07464 3.27088 3.32607 3.34444 3.78704 4.10015 4.16052 4.38311 4.44587 4.99101 5.03877 5.23773 5.35055 5.42911 5.55890 5.78429 5.95924 6.00713 6.38570 6.40933 6.53784 6.55572 6.68620 6.73981 7.02483 7.15982 7.20313 7.44493 7.59834 7.77727 8.08811 8.10993 8.14354 8.32582 8.65522 8.99366 9.54509 11.00500 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.005765 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.216147 B = 4855.627312 C = 5495.408835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.689 5.689 14 C 0.078 3.922 15 C -0.073 4.073 16 C 0.192 3.808 17 C -0.229 4.229 18 C 0.144 3.856 19 N -0.534 5.534 20 C 0.294 3.706 21 N -0.512 5.512 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.024 0.976 25 H 0.030 0.970 26 H 0.090 0.910 27 H 0.262 0.738 28 H 0.326 0.674 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 9.899 -9.165 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.318 5.318 14 C -0.053 4.053 15 C -0.111 4.111 16 C 0.045 3.955 17 C -0.251 4.251 18 C -0.021 4.021 19 N -0.248 5.248 20 C 0.006 3.994 21 N -0.227 5.227 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.182 0.818 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.434 10.042 -8.101 14.000 hybrid contribution 2.606 -0.001 -0.461 2.646 sum -2.828 10.042 -8.562 13.496 Atomic orbital electron populations 1.21702 0.98968 0.98321 1.00478 1.21492 0.92137 0.99158 1.01635 1.19135 0.92745 0.91234 0.86087 0.94965 1.21818 0.92752 1.38344 1.05665 0.93007 1.24926 0.97896 0.94988 0.95679 1.69866 1.34907 1.38079 1.09378 0.86724 0.86106 0.78136 0.77409 1.20494 1.21168 1.20257 1.60884 1.54950 1.05759 1.10213 1.21625 0.98876 0.89878 0.94901 1.20719 1.03509 0.86455 1.00435 1.21923 0.87844 0.97842 0.87881 1.22824 1.03756 0.95589 1.02961 1.23165 0.91873 0.93964 0.93114 1.68392 1.10138 1.41043 1.05256 1.24994 0.93156 0.85067 0.96147 1.68309 1.18066 1.15490 1.20800 0.94462 0.93295 0.95683 0.95117 0.89196 0.92795 0.85853 0.95788 0.90868 0.88810 0.90319 0.83626 0.81805 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.79 37.15 0.36 -2.48 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.34 1.98 -68.86 -0.14 5.20 16 4 H 0.03 0.90 7.70 -51.93 -0.40 0.50 16 5 C -0.55 -14.70 8.47 -34.44 -0.29 -14.99 16 6 H 0.05 1.38 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -25.06 11.29 55.43 0.63 -24.44 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.69 -14.13 5.68 -107.95 -0.61 -14.74 16 14 C 0.08 1.45 5.38 -3.82 -0.02 1.43 16 15 C -0.07 -1.04 5.95 -27.88 -0.17 -1.21 16 16 C 0.19 2.69 6.21 -82.24 -0.51 2.18 16 17 C -0.23 -2.60 9.80 -39.32 -0.39 -2.98 16 18 C 0.14 1.57 11.30 -17.21 -0.19 1.37 16 19 N -0.53 -6.85 10.44 -14.58 -0.15 -7.00 16 20 C 0.29 3.85 12.28 -92.16 -1.13 2.72 16 21 N -0.51 -7.74 10.04 -10.80 -0.11 -7.84 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.97 7.76 -51.93 -0.40 0.56 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.09 2.41 5.96 -51.93 -0.31 2.10 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.33 6.45 8.46 -39.29 -0.33 6.12 16 29 H 0.02 0.49 8.11 -51.92 -0.42 0.07 16 30 H 0.07 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 0.97 7.94 -51.93 -0.41 0.55 16 33 H 0.15 1.25 8.01 -52.48 -0.42 0.83 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -29.71 296.64 -8.69 -38.40 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.18 Total: 4.71 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.71 Total: -9.68 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.25 Total: -54.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.71 -8.69 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.611 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds