Wall clock time and date at job start Sun Mar 29 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 H 1.08995 * 109.46903 * 55.10014 * 3 2 1 5 5 C 1.50705 * 109.47364 * 175.10021 * 3 2 1 6 6 H 1.07994 * 120.00109 * 120.00325 * 5 3 2 7 7 C 1.37876 * 119.99586 * 300.00117 * 5 3 2 8 8 N 1.31514 * 120.00392 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99761 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47448 * 59.99382 * 9 7 5 11 11 H 1.48504 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46803 * 299.99423 * 9 7 5 13 13 N 1.46898 * 109.47099 * 295.09750 * 3 2 1 14 14 C 1.46901 * 110.99872 * 154.21139 * 13 3 2 15 15 C 1.53005 * 109.47219 * 185.20276 * 14 13 3 16 16 C 1.50695 * 109.47408 * 180.02562 * 15 14 13 17 17 C 1.38618 * 120.44904 * 124.97656 * 16 15 14 18 18 C 1.38575 * 118.40434 * 180.02562 * 17 16 15 19 19 N 1.32347 * 119.10159 * 0.02562 * 18 17 16 20 20 C 1.31779 * 120.81855 * 359.97438 * 19 18 17 21 21 N 1.31808 * 121.76000 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47183 * 300.45256 * 1 2 3 23 23 H 1.09005 * 109.47058 * 60.45022 * 1 2 3 24 24 H 1.09001 * 109.47197 * 180.45215 * 1 2 3 25 25 H 1.09000 * 109.47376 * 239.99877 * 2 1 3 26 26 H 1.09002 * 109.47065 * 120.00082 * 2 1 3 27 27 H 0.97002 * 120.00446 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00193 * 278.17290 * 13 3 2 29 29 H 1.09007 * 109.47163 * 65.20817 * 14 13 3 30 30 H 1.08994 * 109.47683 * 305.20843 * 14 13 3 31 31 H 1.09001 * 109.47001 * 60.00344 * 15 14 13 32 32 H 1.09001 * 109.46872 * 300.00793 * 15 14 13 33 33 H 1.08006 * 120.79995 * 0.05047 * 17 16 15 34 34 H 1.07999 * 120.45200 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.12142 * 180.28276 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8428 5 6 3.5422 1.4442 0.1214 6 1 4.1462 1.8892 -0.6554 7 6 4.1453 0.8776 1.2242 8 7 3.4097 0.3361 2.1704 9 14 6.0072 0.8804 1.3750 10 1 6.5017 2.2805 1.3753 11 1 6.4020 0.2161 2.6431 12 1 6.5978 0.1469 0.2267 13 7 1.6494 2.1000 -1.2542 14 6 1.5527 3.5551 -1.0778 15 6 1.0203 4.1905 -2.3638 16 6 0.9217 5.6834 -2.1832 17 6 1.5552 6.5415 -3.0685 18 6 1.4369 7.9066 -2.8621 19 7 0.7283 8.3430 -1.8330 20 6 0.1396 7.4973 -1.0115 21 7 0.2301 6.1928 -1.1767 22 1 -0.3633 0.5208 0.8859 23 1 -0.3633 0.5068 -0.8940 24 1 -0.3634 -1.0276 0.0081 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8340 -0.0622 2.9465 28 1 2.2894 1.8676 -1.9989 29 1 2.5396 3.9604 -0.8540 30 1 0.8737 3.7771 -0.2547 31 1 0.0334 3.7854 -2.5877 32 1 1.6994 3.9685 -3.1870 33 1 2.1269 6.1554 -3.8996 34 1 1.9166 8.6051 -3.5318 35 1 -0.4359 7.8835 -0.1832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:17 Heat of formation + Delta-G solvation = 13.613100 kcal Electronic energy + Delta-G solvation = -16073.196278 eV Core-core repulsion = 13490.906947 eV Total energy + Delta-G solvation = -2582.289331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91640 -38.24786 -35.94031 -34.30915 -33.55120 -32.75997 -30.21175 -27.95664 -25.46753 -25.11242 -24.07082 -22.43879 -21.37170 -18.75957 -18.46077 -17.71987 -16.78100 -16.38629 -16.32071 -15.62377 -15.51880 -14.89209 -14.70382 -14.38584 -14.27686 -13.49539 -13.27864 -13.11120 -12.95413 -12.80343 -12.57861 -12.25322 -11.97251 -11.75735 -11.58435 -11.47983 -11.33684 -11.01923 -10.48776 -10.46113 -10.15637 -9.08467 -8.06269 -6.28962 -0.01995 0.13783 1.38443 1.38588 1.46476 2.39029 2.82246 3.11680 3.14360 3.30569 3.46931 3.90324 4.10253 4.19304 4.29123 4.49234 4.61266 4.65558 4.69724 4.78094 4.87915 4.95706 5.09163 5.17722 5.21454 5.43194 5.50057 5.51529 5.63279 5.77925 6.09065 6.10675 6.19838 6.35529 6.80906 7.02508 7.15886 7.42589 8.90514 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.005765 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.216147 B = 4855.627312 C = 5495.408835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.008 1.008 5 C -0.561 4.561 6 H 0.052 0.948 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.677 5.677 14 C 0.087 3.913 15 C -0.058 4.058 16 C 0.165 3.835 17 C -0.220 4.220 18 C 0.144 3.856 19 N -0.546 5.546 20 C 0.283 3.717 21 N -0.547 5.547 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.002 0.998 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.178 0.822 34 H 0.204 0.796 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 10.663 -11.143 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.010 0.990 5 C -0.600 4.600 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.306 5.306 14 C -0.044 4.044 15 C -0.096 4.096 16 C 0.019 3.981 17 C -0.241 4.241 18 C -0.021 4.021 19 N -0.260 5.260 20 C -0.005 4.005 21 N -0.262 5.262 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.196 0.804 34 H 0.221 0.779 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.716 10.809 -10.100 15.527 hybrid contribution 2.368 -0.174 0.142 2.379 sum -2.348 10.636 -9.958 14.758 Atomic orbital electron populations 1.21568 0.96476 0.99761 1.00497 1.21349 0.94353 0.98145 1.00188 1.18911 0.91643 0.91634 0.86546 0.98987 1.22150 0.93988 1.38118 1.05783 0.92963 1.25695 1.02242 0.94766 0.95468 1.70008 1.36564 1.38709 1.09776 0.85727 0.80901 0.78090 0.77600 1.20323 1.20905 1.19261 1.60794 1.54564 1.06789 1.08496 1.21505 0.97267 0.88747 0.96875 1.20544 1.03893 0.86762 0.98405 1.21990 0.89222 0.97870 0.88968 1.23133 1.02684 0.95447 1.02883 1.23867 0.90846 0.94663 0.92742 1.68464 1.10549 1.41115 1.05903 1.25386 0.93563 0.84623 0.96942 1.68265 1.19295 1.16650 1.21964 0.95501 0.92145 0.93496 0.94840 0.92212 0.92870 0.84960 0.97969 0.93422 0.88694 0.87653 0.80414 0.77919 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.79 71.98 0.70 -4.44 16 2 C -0.10 -4.92 5.45 30.59 0.17 -4.75 16 3 C 0.22 11.19 1.98 44.17 0.09 11.28 16 4 H -0.01 -0.46 7.70 -2.39 -0.02 -0.48 16 5 C -0.56 -30.52 8.47 25.60 0.22 -30.31 16 6 H 0.05 2.77 7.73 -2.91 -0.02 2.75 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.68 -27.73 5.68 -495.44 -2.81 -30.55 16 14 C 0.09 3.27 5.38 86.30 0.46 3.73 16 15 C -0.06 -1.58 5.95 29.85 0.18 -1.40 16 16 C 0.17 4.43 6.21 42.57 0.26 4.70 16 17 C -0.22 -4.36 9.80 22.44 0.22 -4.14 16 18 C 0.14 2.71 11.30 84.70 0.96 3.67 16 19 N -0.55 -13.08 10.44 -200.06 -2.09 -15.17 16 20 C 0.28 7.24 12.28 180.88 2.22 9.47 16 21 N -0.55 -16.46 10.04 -188.08 -1.89 -18.35 16 22 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 2.32 7.76 -2.38 -0.02 2.30 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 3.27 5.96 -2.39 -0.01 3.25 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.33 12.89 8.46 -89.69 -0.76 12.13 16 29 H 0.00 0.08 8.11 -2.38 -0.02 0.07 16 30 H 0.05 2.02 7.76 -2.39 -0.02 2.00 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.11 2.29 7.94 -2.39 -0.02 2.27 16 33 H 0.18 2.27 8.01 -2.91 -0.02 2.24 16 34 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.21 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -65.20 296.64 1.72 -63.47 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.31 Total: 18.39 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.93 Total: -10.73 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.55 Total: -116.60 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.20 1.72 -63.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.088 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds