Wall clock time and date at job start Sun Mar 29 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47174 * 2 1 4 4 H 1.09002 * 109.47123 * 305.60677 * 3 2 1 5 5 C 1.50703 * 109.47267 * 185.61073 * 3 2 1 6 6 H 1.08000 * 119.99979 * 245.40852 * 5 3 2 7 7 C 1.37877 * 119.99990 * 65.40172 * 5 3 2 8 8 N 1.31513 * 120.00316 * 197.21781 * 7 5 3 9 9 Si 1.86807 * 119.99908 * 17.21687 * 7 5 3 10 10 H 1.48497 * 109.46796 * 86.81515 * 9 7 5 11 11 H 1.48497 * 109.47005 * 206.81396 * 9 7 5 12 12 H 1.48499 * 109.47091 * 326.81752 * 9 7 5 13 13 N 1.46901 * 109.47350 * 65.60836 * 3 2 1 14 14 C 1.46895 * 111.00233 * 251.62992 * 13 3 2 15 15 C 1.50694 * 109.47351 * 183.51299 * 14 13 3 16 16 C 1.38628 * 120.80023 * 259.72302 * 15 14 13 17 17 N 1.32321 * 119.10452 * 179.71542 * 16 15 14 18 18 C 1.31807 * 120.81323 * 0.56393 * 17 16 15 19 19 N 1.31784 * 121.75819 * 359.70895 * 18 17 16 20 20 C 1.32343 * 120.81963 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.45001 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47246 * 65.15306 * 1 2 3 23 23 H 1.08995 * 109.46915 * 305.14885 * 1 2 3 24 24 H 1.09007 * 109.46985 * 185.15165 * 1 2 3 25 25 H 1.08997 * 109.47263 * 120.00272 * 2 1 3 26 26 H 1.08998 * 109.46834 * 239.99756 * 2 1 3 27 27 H 0.96998 * 120.00298 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99406 * 15.58567 * 13 3 2 29 29 H 1.09004 * 109.47080 * 303.50910 * 14 13 3 30 30 H 1.08998 * 109.47100 * 63.51257 * 14 13 3 31 31 H 1.07998 * 120.44468 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.12302 * 179.72414 * 18 17 16 33 33 H 1.08997 * 109.47310 * 269.98285 * 21 20 19 34 34 H 1.09003 * 109.46563 * 29.98216 * 21 20 19 35 35 H 1.09002 * 109.46946 * 149.97695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 3.5406 1.4447 -0.1389 6 1 4.1573 1.8068 0.6704 7 6 4.1263 0.9844 -1.2991 8 7 5.4021 0.6655 -1.3101 9 14 3.1074 0.8136 -2.8556 10 1 3.0997 2.1063 -3.5864 11 1 3.6970 -0.2401 -3.7199 12 1 1.7158 0.4391 -2.4976 13 7 1.6640 2.0948 1.2614 14 6 0.6037 3.0881 1.0447 15 6 0.3055 3.7955 2.3414 16 6 -0.7919 3.4377 3.1092 17 7 -1.0189 4.0775 4.2450 18 6 -0.2236 5.0505 4.6424 19 7 0.8253 5.4213 3.9360 20 6 1.1186 4.8229 2.7926 21 6 2.3205 5.2533 1.9917 22 1 -0.3634 0.4318 -0.9325 23 1 -0.3633 0.5916 0.8402 24 1 -0.3633 -1.0236 0.0923 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 5.8142 0.3420 -2.1265 28 1 1.3859 1.4136 1.9518 29 1 0.9327 3.8147 0.3018 30 1 -0.2965 2.5868 0.6890 31 1 -1.4502 2.6445 2.7868 32 1 -0.4370 5.5573 5.5719 33 1 2.0297 6.0378 1.2931 34 1 3.0888 5.6331 2.6653 35 1 2.7124 4.4003 1.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:50 Heat of formation + Delta-G solvation = 42.139606 kcal Electronic energy + Delta-G solvation = -16618.314128 eV Core-core repulsion = 14037.261799 eV Total energy + Delta-G solvation = -2581.052329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94287 -37.05450 -34.33675 -33.62163 -32.07558 -30.61252 -28.57937 -27.46339 -25.25229 -22.99424 -22.55317 -21.67043 -19.99991 -17.67046 -16.83543 -16.64009 -15.29265 -15.09146 -14.73322 -14.03369 -13.84035 -13.64032 -13.05505 -12.88131 -12.73303 -12.65244 -12.19212 -11.86919 -11.82202 -11.66455 -11.06852 -10.87327 -10.63873 -10.38359 -10.32888 -9.99865 -9.62912 -9.42359 -9.11951 -9.08112 -8.42517 -7.48726 -6.10847 -4.02215 1.03113 1.20455 3.23885 3.32610 3.35460 3.86488 4.21097 4.29140 4.39093 4.68360 4.85185 4.99477 5.14771 5.28553 5.51275 5.64539 5.72523 5.76855 5.83298 5.88373 5.93995 6.02330 6.17184 6.38682 6.41952 6.48690 6.65943 6.67292 6.78693 7.11024 7.13013 7.70146 7.82267 8.17258 8.20920 8.65465 9.07404 9.55905 11.02399 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.006882 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.436969 B = 4067.393372 C = 4567.943651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.857 3.143 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.666 5.666 14 C 0.102 3.898 15 C -0.176 4.176 16 C 0.145 3.855 17 N -0.531 5.531 18 C 0.283 3.717 19 N -0.526 5.526 20 C 0.200 3.800 21 C -0.117 4.117 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.263 0.737 28 H 0.328 0.672 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.161 0.839 32 H 0.190 0.810 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 5.141 5.192 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.086 3.914 4 H 0.039 0.961 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.529 5.529 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.296 5.296 14 C -0.028 4.028 15 C -0.180 4.180 16 C -0.021 4.021 17 N -0.245 5.245 18 C -0.005 4.005 19 N -0.241 5.241 20 C 0.054 3.946 21 C -0.174 4.174 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.179 0.821 32 H 0.207 0.793 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.091 5.993 5.886 13.913 hybrid contribution -1.121 -1.199 -1.793 2.431 sum -12.212 4.794 4.093 13.743 Atomic orbital electron populations 1.21956 0.98560 1.00334 1.00515 1.22547 0.92620 1.01357 1.02217 1.19581 0.96859 0.88472 0.86509 0.96062 1.20954 0.88971 1.41760 1.02300 0.90107 1.24897 0.94712 0.94627 0.98635 1.69981 1.11939 1.43152 1.27779 0.87305 0.81773 0.78003 0.84490 1.20563 1.21533 1.18202 1.60663 1.37916 1.18770 1.12230 1.20882 0.94429 0.95704 0.91829 1.21660 0.97081 0.98966 1.00303 1.23110 0.94097 0.95963 0.88896 1.68358 1.31278 1.09142 1.15719 1.24824 0.86430 0.90817 0.98430 1.68298 1.18871 1.29822 1.07111 1.21713 0.94149 0.88854 0.89854 1.20972 0.93423 1.03881 0.99131 0.93612 0.93691 0.93806 0.92251 0.91879 0.92737 0.85430 0.89764 0.94751 0.82142 0.79293 0.90419 0.90465 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.45 37.16 0.35 -2.13 16 2 C -0.15 -2.93 4.56 -26.73 -0.12 -3.05 16 3 C 0.19 4.13 1.73 -68.87 -0.12 4.01 16 4 H 0.02 0.47 6.15 -51.93 -0.32 0.15 16 5 C -0.50 -13.26 9.25 -34.44 -0.32 -13.58 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.01 5.30 -17.82 -0.09 1.92 16 8 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 9 Si 0.86 20.17 25.86 -169.99 -4.40 15.78 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.26 -5.63 5.65 56.52 0.32 -5.32 16 13 N -0.67 -12.12 5.46 -109.23 -0.60 -12.72 16 14 C 0.10 1.55 4.39 -4.98 -0.02 1.53 16 15 C -0.18 -2.55 5.46 -104.36 -0.57 -3.12 16 16 C 0.14 1.94 10.97 -17.20 -0.19 1.75 16 17 N -0.53 -7.44 10.44 -14.58 -0.15 -7.60 16 18 C 0.28 3.80 12.29 -92.15 -1.13 2.66 16 19 N -0.53 -7.93 10.38 -10.80 -0.11 -8.04 16 20 C 0.20 3.05 6.82 -82.24 -0.56 2.49 16 21 C -0.12 -1.68 9.53 36.01 0.34 -1.34 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.63 5.97 -51.93 -0.31 0.32 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 26 H 0.06 1.35 5.17 -51.93 -0.27 1.09 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.33 5.71 7.71 -39.29 -0.30 5.41 16 29 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 30 H 0.03 0.48 6.50 -51.93 -0.34 0.14 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 1.87 6.54 -51.93 -0.34 1.53 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -29.45 284.16 -7.49 -36.93 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.85 Total: 5.74 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.43 Total: -8.84 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.09 Total: -53.89 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.40 Total: 15.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.45 -7.49 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.073 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds