Wall clock time and date at job start Sun Mar 29 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47174 * 2 1 4 4 H 1.09002 * 109.47123 * 305.60677 * 3 2 1 5 5 C 1.50703 * 109.47267 * 185.61073 * 3 2 1 6 6 H 1.08000 * 119.99979 * 245.40852 * 5 3 2 7 7 C 1.37877 * 119.99990 * 65.40172 * 5 3 2 8 8 N 1.31513 * 120.00316 * 197.21781 * 7 5 3 9 9 Si 1.86807 * 119.99908 * 17.21687 * 7 5 3 10 10 H 1.48497 * 109.46796 * 86.81515 * 9 7 5 11 11 H 1.48497 * 109.47005 * 206.81396 * 9 7 5 12 12 H 1.48499 * 109.47091 * 326.81752 * 9 7 5 13 13 N 1.46901 * 109.47350 * 65.60836 * 3 2 1 14 14 C 1.46895 * 111.00233 * 251.62992 * 13 3 2 15 15 C 1.50694 * 109.47351 * 183.51299 * 14 13 3 16 16 C 1.38628 * 120.80023 * 259.72302 * 15 14 13 17 17 N 1.32321 * 119.10452 * 179.71542 * 16 15 14 18 18 C 1.31807 * 120.81323 * 0.56393 * 17 16 15 19 19 N 1.31784 * 121.75819 * 359.70895 * 18 17 16 20 20 C 1.32343 * 120.81963 * 359.97438 * 19 18 17 21 21 C 1.50704 * 120.45001 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47246 * 65.15306 * 1 2 3 23 23 H 1.08995 * 109.46915 * 305.14885 * 1 2 3 24 24 H 1.09007 * 109.46985 * 185.15165 * 1 2 3 25 25 H 1.08997 * 109.47263 * 120.00272 * 2 1 3 26 26 H 1.08998 * 109.46834 * 239.99756 * 2 1 3 27 27 H 0.96998 * 120.00298 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99406 * 15.58567 * 13 3 2 29 29 H 1.09004 * 109.47080 * 303.50910 * 14 13 3 30 30 H 1.08998 * 109.47100 * 63.51257 * 14 13 3 31 31 H 1.07998 * 120.44468 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.12302 * 179.72414 * 18 17 16 33 33 H 1.08997 * 109.47310 * 269.98285 * 21 20 19 34 34 H 1.09003 * 109.46563 * 29.98216 * 21 20 19 35 35 H 1.09002 * 109.46946 * 149.97695 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 3.5406 1.4447 -0.1389 6 1 4.1573 1.8068 0.6704 7 6 4.1263 0.9844 -1.2991 8 7 5.4021 0.6655 -1.3101 9 14 3.1074 0.8136 -2.8556 10 1 3.0997 2.1063 -3.5864 11 1 3.6970 -0.2401 -3.7199 12 1 1.7158 0.4391 -2.4976 13 7 1.6640 2.0948 1.2614 14 6 0.6037 3.0881 1.0447 15 6 0.3055 3.7955 2.3414 16 6 -0.7919 3.4377 3.1092 17 7 -1.0189 4.0775 4.2450 18 6 -0.2236 5.0505 4.6424 19 7 0.8253 5.4213 3.9360 20 6 1.1186 4.8229 2.7926 21 6 2.3205 5.2533 1.9917 22 1 -0.3634 0.4318 -0.9325 23 1 -0.3633 0.5916 0.8402 24 1 -0.3633 -1.0236 0.0923 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 5.8142 0.3420 -2.1265 28 1 1.3859 1.4136 1.9518 29 1 0.9327 3.8147 0.3018 30 1 -0.2965 2.5868 0.6890 31 1 -1.4502 2.6445 2.7868 32 1 -0.4370 5.5573 5.5719 33 1 2.0297 6.0378 1.2931 34 1 3.0888 5.6331 2.6653 35 1 2.7124 4.4003 1.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:49 Heat of formation + Delta-G solvation = 22.258314 kcal Electronic energy + Delta-G solvation = -16619.176245 eV Core-core repulsion = 14037.261799 eV Total energy + Delta-G solvation = -2581.914446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02451 -38.54994 -35.53603 -34.93883 -33.95100 -31.91855 -29.85745 -28.99932 -26.61020 -24.36386 -23.86834 -22.87819 -21.66120 -18.81347 -18.76406 -17.66717 -16.84712 -16.51905 -16.08194 -15.58904 -15.18365 -14.74112 -14.63929 -14.24183 -14.01276 -13.81682 -13.59322 -13.39411 -13.21883 -12.95070 -12.65574 -12.52752 -12.26597 -11.74415 -11.57552 -11.47439 -11.33519 -11.26598 -10.49815 -10.25742 -10.17239 -8.95316 -8.22387 -6.17335 -0.04610 0.11798 1.37696 1.41357 1.48937 2.40484 2.77863 3.10557 3.18409 3.30216 3.58582 3.63284 3.85713 4.03331 4.34495 4.41594 4.48166 4.53486 4.59574 4.68037 4.72914 4.81226 4.90443 5.04301 5.13115 5.21335 5.25500 5.28527 5.53929 5.56265 5.79918 6.02570 6.10428 6.69561 6.81270 6.89447 7.14337 7.45073 8.94994 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.006882 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.436969 B = 4067.393372 C = 4567.943651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.202 3.798 4 H 0.026 0.974 5 C -0.502 4.502 6 H 0.032 0.968 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.226 1.226 13 N -0.677 5.677 14 C 0.109 3.891 15 C -0.184 4.184 16 C 0.152 3.848 17 N -0.540 5.540 18 C 0.283 3.717 19 N -0.544 5.544 20 C 0.185 3.815 21 C -0.111 4.111 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.191 0.809 32 H 0.222 0.778 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 5.155 5.167 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.093 3.907 4 H 0.044 0.956 5 C -0.540 4.540 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.148 1.148 13 N -0.308 5.308 14 C -0.020 4.020 15 C -0.189 4.189 16 C -0.014 4.014 17 N -0.254 5.254 18 C -0.005 4.005 19 N -0.259 5.259 20 C 0.039 3.961 21 C -0.168 4.168 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.207 0.793 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.394 6.021 5.883 16.674 hybrid contribution -0.061 -1.142 -1.626 1.988 sum -14.455 4.879 4.257 15.839 Atomic orbital electron populations 1.21866 0.94811 1.02141 1.01690 1.22402 0.95913 0.99324 1.01012 1.19329 0.93295 0.90079 0.88042 0.95614 1.21281 0.91841 1.40207 1.00695 0.94976 1.25734 0.95738 0.94605 1.02203 1.70143 1.14330 1.45568 1.28640 0.86233 0.81598 0.77748 0.79659 1.20273 1.22132 1.14831 1.60399 1.40268 1.19139 1.11010 1.20814 0.94194 0.94782 0.92258 1.21567 0.97812 0.99136 1.00378 1.23561 0.93683 0.95916 0.88205 1.68469 1.31453 1.09478 1.15992 1.25498 0.85525 0.90453 0.99014 1.68329 1.19839 1.30483 1.07295 1.21841 0.94464 0.89496 0.90249 1.20859 0.93509 1.03237 0.99190 0.93039 0.91734 0.91925 0.93029 0.93744 0.92923 0.84766 0.90472 0.92299 0.79263 0.76200 0.88809 0.90585 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.45 71.98 0.68 -3.37 16 2 C -0.15 -5.51 4.56 30.59 0.14 -5.37 16 3 C 0.20 8.37 1.73 44.17 0.08 8.45 16 4 H 0.03 1.07 6.15 -2.39 -0.01 1.05 16 5 C -0.50 -27.26 9.25 25.60 0.24 -27.03 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 7 C 0.01 0.80 5.30 84.65 0.45 1.25 16 8 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 9 Si 0.92 41.64 25.86 68.60 1.77 43.42 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.23 -8.93 5.65 99.48 0.56 -8.37 16 13 N -0.68 -23.93 5.46 -499.48 -2.73 -26.66 16 14 C 0.11 3.07 4.39 85.56 0.38 3.44 16 15 C -0.18 -4.96 5.46 -19.69 -0.11 -5.06 16 16 C 0.15 3.59 10.97 84.71 0.93 4.52 16 17 N -0.54 -13.56 10.44 -200.03 -2.09 -15.65 16 18 C 0.28 6.90 12.29 180.88 2.22 9.13 16 19 N -0.54 -15.59 10.38 -188.08 -1.95 -17.54 16 20 C 0.19 5.43 6.82 42.56 0.29 5.72 16 21 C -0.11 -3.20 9.53 71.24 0.68 -2.52 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.51 5.97 -2.39 -0.01 1.50 16 24 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 26 H 0.04 1.81 5.17 -2.39 -0.01 1.80 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.33 11.08 7.71 -89.69 -0.69 10.38 16 29 H 0.08 2.28 7.31 -2.38 -0.02 2.26 16 30 H 0.06 1.39 6.50 -2.39 -0.02 1.37 16 31 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.22 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.09 2.98 6.54 -2.39 -0.02 2.97 16 Total: -1.00 -65.57 284.16 1.53 -64.04 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.26 Total: 21.09 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.97 Total: -10.84 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -6.47 Total: -117.71 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.77 Total: 43.42 kcal Total: -65.57 1.53 -64.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.297 kcal (2) G-P(sol) polarization free energy of solvation -65.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds