Wall clock time and date at job start Sun Mar 29 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 H 1.08999 * 109.46482 * 54.66456 * 3 2 1 5 5 C 1.50697 * 109.46884 * 174.65975 * 3 2 1 6 6 H 1.08006 * 119.99524 * 120.00254 * 5 3 2 7 7 C 1.37867 * 120.00566 * 300.00396 * 5 3 2 8 8 N 1.31517 * 120.00134 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00253 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46883 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46988 * 120.00014 * 9 7 5 12 12 H 1.48498 * 109.47243 * 240.00090 * 9 7 5 13 13 N 1.46898 * 109.47314 * 294.66594 * 3 2 1 14 14 C 1.46902 * 111.00115 * 106.32804 * 13 3 2 15 15 C 1.50698 * 109.46602 * 85.55865 * 14 13 3 16 16 C 1.38627 * 120.80002 * 255.99594 * 15 14 13 17 17 N 1.32316 * 119.10305 * 179.75073 * 16 15 14 18 18 C 1.31818 * 120.81812 * 0.25216 * 17 16 15 19 19 N 1.31778 * 121.75304 * 0.02562 * 18 17 16 20 20 C 1.32342 * 120.82193 * 359.97256 * 19 18 17 21 21 C 1.50703 * 120.45121 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.47049 * 181.76476 * 1 2 3 23 23 H 1.09000 * 109.47191 * 301.76845 * 1 2 3 24 24 H 1.09001 * 109.46717 * 61.76613 * 1 2 3 25 25 H 1.09003 * 109.47375 * 240.00051 * 2 1 3 26 26 H 1.08998 * 109.46647 * 120.00336 * 2 1 3 27 27 H 0.97003 * 120.00318 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99901 * 230.28449 * 13 3 2 29 29 H 1.09003 * 109.47045 * 325.55955 * 14 13 3 30 30 H 1.08995 * 109.47101 * 205.55316 * 14 13 3 31 31 H 1.08000 * 120.44646 * 0.02565 * 16 15 14 32 32 H 1.07994 * 119.12307 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47071 * 87.44433 * 21 20 19 34 34 H 1.09000 * 109.47131 * 207.44427 * 21 20 19 35 35 H 1.08998 * 109.46860 * 327.44536 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9831 0.8384 5 6 3.5412 1.4445 0.1322 6 1 4.1508 1.8876 -0.6414 7 6 4.1365 0.8808 1.2407 8 7 3.3942 0.3416 2.1830 9 14 5.9973 0.8826 1.4042 10 1 6.5977 1.5456 0.2187 11 1 6.3855 1.6206 2.6330 12 1 6.4880 -0.5162 1.4911 13 7 1.6584 2.0969 -1.2586 14 6 0.5657 3.0550 -1.0436 15 6 1.1381 4.3822 -0.6173 16 6 1.0736 4.7910 0.7057 17 7 1.5914 5.9608 1.0438 18 6 2.1582 6.7350 0.1400 19 7 2.2328 6.3817 -1.1273 20 6 1.7367 5.2260 -1.5394 21 6 1.8271 4.8300 -2.9906 22 1 -0.3633 -1.0271 0.0316 23 1 -0.3633 0.5411 0.8737 24 1 -0.3633 0.4862 -0.9054 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8129 -0.0554 2.9627 28 1 2.4533 2.5456 -1.6884 29 1 -0.0991 2.6793 -0.2658 30 1 0.0059 3.1815 -1.9702 31 1 0.6110 4.1613 1.4512 32 1 2.5725 7.6841 0.4463 33 1 2.7745 4.3218 -3.1703 34 1 1.0031 4.1601 -3.2365 35 1 1.7691 5.7217 -3.6148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:52 Heat of formation + Delta-G solvation = 15.883866 kcal Electronic energy + Delta-G solvation = -16915.593155 eV Core-core repulsion = 14333.402292 eV Total energy + Delta-G solvation = -2582.190863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.06968 -38.31820 -35.62659 -34.93692 -33.55553 -31.83773 -29.71902 -28.85513 -26.40097 -24.59629 -24.04472 -22.91854 -21.28587 -18.94829 -18.47449 -17.74303 -16.87152 -16.24787 -16.14542 -15.53539 -15.15541 -14.66257 -14.41237 -14.12058 -13.88745 -13.86714 -13.54700 -13.21945 -13.13000 -12.78175 -12.75130 -12.59828 -12.19007 -11.91745 -11.51128 -11.47353 -11.28129 -10.86067 -10.53480 -10.31012 -10.18818 -9.03476 -8.13768 -6.27898 -0.04152 0.09218 1.33387 1.36975 1.45645 2.36760 2.78641 3.12965 3.15752 3.28660 3.59020 3.73825 3.87409 4.01620 4.49105 4.57217 4.66195 4.68344 4.71218 4.78944 4.90557 4.93521 5.03486 5.13730 5.18717 5.40925 5.53287 5.55218 5.67968 5.71136 5.96529 6.02100 6.30535 6.41510 6.75930 7.01105 7.11415 7.41818 8.88546 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.009329 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.115619 B = 3000.670498 C = 3631.682755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.011 1.011 5 C -0.543 4.543 6 H 0.048 0.952 7 C 0.022 3.978 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.668 5.668 14 C 0.109 3.891 15 C -0.215 4.215 16 C 0.144 3.856 17 N -0.546 5.546 18 C 0.276 3.724 19 N -0.536 5.536 20 C 0.171 3.829 21 C -0.105 4.105 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 7.287 -7.253 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.006 0.994 5 C -0.582 4.582 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.296 5.296 14 C -0.021 4.021 15 C -0.221 4.221 16 C -0.021 4.021 17 N -0.260 5.260 18 C -0.012 4.012 19 N -0.250 5.250 20 C 0.024 3.976 21 C -0.162 4.162 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.178 0.822 32 H 0.237 0.763 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.622 7.520 -7.003 11.713 hybrid contribution 1.378 -0.169 1.036 1.733 sum -4.243 7.351 -5.967 10.375 Atomic orbital electron populations 1.21656 0.96400 1.00134 1.00575 1.21396 0.94373 0.98587 0.99837 1.18968 0.92387 0.91635 0.85509 0.99355 1.21831 0.93440 1.37918 1.04984 0.93337 1.25548 1.01631 0.95009 0.95675 1.69994 1.36009 1.38956 1.09671 0.85725 0.81660 0.77854 0.77722 1.19562 1.21233 1.20268 1.61044 1.12126 1.30173 1.26262 1.21203 0.94434 0.84397 1.02084 1.22618 1.03052 1.00794 0.95628 1.23305 0.92110 0.91599 0.95068 1.68374 1.11893 1.06373 1.39344 1.25445 0.91934 0.99445 0.84361 1.68289 1.19218 1.18249 1.19289 1.22104 0.88720 0.88212 0.98531 1.20915 1.04609 1.03420 0.87235 0.93753 0.94744 0.91892 0.95269 0.92522 0.92974 0.84967 0.90765 0.87486 0.82168 0.76325 0.89449 0.88050 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.96 71.98 0.64 -4.17 16 2 C -0.10 -4.75 5.45 30.60 0.17 -4.58 16 3 C 0.22 10.47 1.99 44.17 0.09 10.56 16 4 H -0.01 -0.58 7.23 -2.39 -0.02 -0.60 16 5 C -0.54 -28.87 8.60 25.60 0.22 -28.65 16 6 H 0.05 2.58 7.37 -2.91 -0.02 2.56 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -51.16 11.29 21.44 0.24 -50.92 16 9 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.67 -24.93 6.16 -499.46 -3.08 -28.00 16 14 C 0.11 3.33 4.69 85.56 0.40 3.73 16 15 C -0.22 -6.94 5.16 -19.69 -0.10 -7.04 16 16 C 0.14 5.07 10.79 84.71 0.91 5.99 16 17 N -0.55 -19.04 10.44 -200.03 -2.09 -21.13 16 18 C 0.28 8.49 12.29 180.88 2.22 10.71 16 19 N -0.54 -16.83 10.38 -188.08 -1.95 -18.78 16 20 C 0.17 5.15 6.68 42.57 0.28 5.44 16 21 C -0.10 -2.35 9.20 71.24 0.66 -1.69 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 2.09 7.18 -2.39 -0.02 2.07 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 2.99 5.95 -2.39 -0.01 2.98 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.33 12.63 6.59 -89.70 -0.59 12.04 16 29 H 0.07 2.33 6.67 -2.39 -0.02 2.31 16 30 H 0.11 2.58 6.72 -2.39 -0.02 2.56 16 31 H 0.16 5.50 8.05 -2.91 -0.02 5.48 16 32 H 0.22 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.09 2.00 8.00 -2.38 -0.02 1.98 16 34 H 0.10 1.93 6.27 -2.39 -0.01 1.91 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.38 287.16 1.60 -59.79 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.50 Total: 21.43 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.94 Total: -8.10 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.87 Total: -118.82 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -61.38 1.60 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.669 kcal (2) G-P(sol) polarization free energy of solvation -61.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds