Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.09009 * 109.46749 * 305.00108 * 3 2 1 5 5 C 1.50692 * 109.47485 * 185.00152 * 3 2 1 6 6 H 1.08002 * 119.99874 * 239.99869 * 5 3 2 7 7 C 1.37875 * 120.00036 * 59.99626 * 5 3 2 8 8 N 1.31509 * 120.00365 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47005 * 119.99664 * 9 7 5 12 12 H 1.48501 * 109.47239 * 240.00138 * 9 7 5 13 13 N 1.46504 * 109.47231 * 64.99617 * 3 2 1 14 14 C 1.35384 * 126.49606 * 59.96105 * 13 3 2 15 15 N 1.30848 * 108.77993 * 179.97438 * 14 13 3 16 16 C 1.33290 * 109.10209 * 359.97438 * 15 14 13 17 17 C 1.35249 * 108.05451 * 0.07296 * 16 15 14 18 18 C 1.50615 * 123.73705 * 179.85202 * 17 16 15 19 19 N 1.47346 * 108.24700 * 343.63678 * 18 17 16 20 20 C 1.46953 * 111.40414 * 51.12070 * 19 18 17 21 21 C 1.50915 * 128.91624 * 180.02562 * 16 15 14 22 22 H 1.09000 * 109.47245 * 299.99701 * 1 2 3 23 23 H 1.09002 * 109.47380 * 60.00627 * 1 2 3 24 24 H 1.09005 * 109.46624 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47546 * 240.00003 * 2 1 3 26 26 H 1.09002 * 109.47380 * 119.99373 * 2 1 3 27 27 H 0.97001 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.07994 * 125.60651 * 0.02562 * 14 13 3 29 29 H 1.09008 * 109.70046 * 103.36459 * 18 17 16 30 30 H 1.09002 * 109.70641 * 223.97608 * 18 17 16 31 31 H 1.00894 * 111.03952 * 286.84654 * 19 18 17 32 32 H 1.09002 * 109.43751 * 168.62139 * 20 19 18 33 33 H 1.08999 * 109.43414 * 48.70565 * 20 19 18 34 34 H 1.08994 * 109.78539 * 44.43819 * 21 16 15 35 35 H 1.08998 * 109.78601 * 283.61137 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3812 10 1 6.5988 1.5445 -0.1931 11 1 6.4962 -0.5188 -1.4626 12 1 6.4000 1.6159 -2.6092 13 7 1.6523 2.0976 1.2518 14 6 2.0007 1.7143 2.5026 15 7 1.4660 2.5438 3.3617 16 6 0.7708 3.4689 2.7001 17 6 0.8747 3.2051 1.3777 18 6 0.2179 4.0340 0.3052 19 7 -0.8193 4.8681 0.9373 20 6 -0.2851 5.6063 2.0902 21 6 -0.0190 4.6327 3.2472 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8293 -0.0610 -2.9499 28 1 2.6190 0.8643 2.7505 29 1 0.9615 4.6711 -0.1738 30 1 -0.2391 3.3795 -0.4370 31 1 -1.6189 4.3128 1.2025 32 1 -1.0089 6.3571 2.4073 33 1 0.6461 6.0970 1.8068 34 1 0.5548 5.1342 4.0264 35 1 -0.9650 4.2772 3.6556 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165710.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = 45.184667 kcal Electronic energy + Delta-G solvation = -17187.630076 eV Core-core repulsion = 14606.709792 eV Total energy + Delta-G solvation = -2580.920285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55319 -36.96267 -35.39236 -32.45719 -31.32842 -29.70210 -28.91140 -27.01684 -23.68791 -23.47685 -22.37148 -21.49218 -19.20815 -18.72749 -16.79053 -15.95989 -15.62161 -14.65412 -14.54127 -14.33279 -13.93742 -13.35869 -13.07893 -12.95550 -12.73741 -12.16595 -12.03722 -11.76285 -11.54324 -11.30557 -11.19168 -11.03999 -10.77802 -10.37631 -10.29435 -10.03019 -9.62750 -9.22813 -8.71507 -8.44216 -8.41888 -7.37824 -6.37531 -4.47995 2.86975 3.12006 3.21107 3.26139 3.80515 3.87710 4.20810 4.46232 4.93975 5.01747 5.33014 5.41568 5.46535 5.69503 5.84705 5.90659 5.99870 6.00923 6.03453 6.10512 6.18519 6.23548 6.45010 6.60494 6.65798 6.78510 6.94984 7.11879 7.34599 7.44676 7.50461 7.55689 7.67286 7.89176 8.16292 8.60137 8.89541 9.21000 10.67428 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.007947 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.440252 B = 3522.402839 C = 3658.385707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.258 3.742 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.905 3.095 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.399 5.399 14 C 0.179 3.821 15 N -0.506 5.506 16 C -0.029 4.029 17 C -0.069 4.069 18 C 0.139 3.861 19 N -0.676 5.676 20 C 0.059 3.941 21 C -0.061 4.061 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.112 0.888 26 H 0.043 0.957 27 H 0.268 0.732 28 H 0.193 0.807 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.341 0.659 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 4.173 3.638 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.158 3.842 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.084 0.916 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.732 3.268 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.076 5.076 14 C -0.103 4.103 15 N -0.225 5.225 16 C -0.161 4.161 17 C -0.192 4.192 18 C 0.009 3.991 19 N -0.303 5.303 20 C -0.071 4.071 21 C -0.101 4.101 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.130 0.870 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.210 0.790 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.801 4.455 3.674 8.186 hybrid contribution 1.194 -0.983 -0.329 1.581 sum -4.608 3.472 3.345 6.669 Atomic orbital electron populations 1.21816 0.98447 0.99992 1.00280 1.21951 0.92583 0.98377 1.03815 1.19420 0.96127 0.90180 0.78505 0.92504 1.21285 0.89694 1.39644 1.06848 0.91555 1.24884 0.99220 0.94233 0.95007 1.69843 1.35503 1.37333 1.09415 0.86307 0.84063 0.78038 0.78376 1.19533 1.20567 1.20619 1.45731 1.32941 1.19288 1.09603 1.24628 1.03994 1.01919 0.79744 1.69786 1.13729 1.05492 1.33494 1.20201 1.05927 1.00188 0.89817 1.21784 1.04572 0.94821 0.97990 1.20400 0.93022 0.92800 0.92903 1.60899 1.08590 1.30593 1.30207 1.22112 1.00533 0.95595 0.88904 1.20565 0.98214 0.92884 0.98477 0.94421 0.93506 0.94023 0.87025 0.93825 0.92218 0.78980 0.89747 0.90146 0.84208 0.90331 0.90806 0.90855 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.13 -2.80 5.24 -26.73 -0.14 -2.94 16 3 C 0.26 5.96 2.35 -69.08 -0.16 5.80 16 4 H 0.06 1.40 7.49 -51.92 -0.39 1.02 16 5 C -0.54 -13.67 8.51 -34.44 -0.29 -13.96 16 6 H 0.07 1.76 7.74 -52.49 -0.41 1.35 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -22.81 11.29 55.43 0.63 -22.19 16 9 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.40 -8.63 2.04 -108.09 -0.22 -8.86 16 14 C 0.18 3.85 11.56 -89.77 -1.04 2.81 16 15 N -0.51 -10.92 11.24 -10.70 -0.12 -11.04 16 16 C -0.03 -0.56 7.07 -82.92 -0.59 -1.15 16 17 C -0.07 -1.38 6.81 -81.89 -0.56 -1.94 16 18 C 0.14 2.36 6.41 -4.77 -0.03 2.33 16 19 N -0.68 -9.56 6.88 -114.41 -0.79 -10.35 16 20 C 0.06 0.77 6.54 -3.52 -0.02 0.75 16 21 C -0.06 -0.93 6.42 -27.50 -0.18 -1.10 16 22 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.11 2.68 5.95 -51.93 -0.31 2.37 16 26 H 0.04 0.93 7.81 -51.93 -0.41 0.53 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.19 3.79 8.06 -52.49 -0.42 3.37 16 29 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 31 H 0.34 4.48 8.79 -39.29 -0.35 4.13 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -27.11 285.17 -9.15 -36.26 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.19 Total: 7.01 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.74 Total: -10.15 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.50 Total: -52.43 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.11 -9.15 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165710.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.442 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds