Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.09009 * 109.46749 * 305.00108 * 3 2 1 5 5 C 1.50692 * 109.47485 * 185.00152 * 3 2 1 6 6 H 1.08002 * 119.99874 * 239.99869 * 5 3 2 7 7 C 1.37875 * 120.00036 * 59.99626 * 5 3 2 8 8 N 1.31509 * 120.00365 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47005 * 119.99664 * 9 7 5 12 12 H 1.48501 * 109.47239 * 240.00138 * 9 7 5 13 13 N 1.46504 * 109.47231 * 64.99617 * 3 2 1 14 14 C 1.35384 * 126.49606 * 59.96105 * 13 3 2 15 15 N 1.30848 * 108.77993 * 179.97438 * 14 13 3 16 16 C 1.33290 * 109.10209 * 359.97438 * 15 14 13 17 17 C 1.35249 * 108.05451 * 0.07296 * 16 15 14 18 18 C 1.50615 * 123.73705 * 179.85202 * 17 16 15 19 19 N 1.47346 * 108.24700 * 343.63678 * 18 17 16 20 20 C 1.46953 * 111.40414 * 51.12070 * 19 18 17 21 21 C 1.50915 * 128.91624 * 180.02562 * 16 15 14 22 22 H 1.09000 * 109.47245 * 299.99701 * 1 2 3 23 23 H 1.09002 * 109.47380 * 60.00627 * 1 2 3 24 24 H 1.09005 * 109.46624 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47546 * 240.00003 * 2 1 3 26 26 H 1.09002 * 109.47380 * 119.99373 * 2 1 3 27 27 H 0.97001 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.07994 * 125.60651 * 0.02562 * 14 13 3 29 29 H 1.09008 * 109.70046 * 103.36459 * 18 17 16 30 30 H 1.09002 * 109.70641 * 223.97608 * 18 17 16 31 31 H 1.00894 * 111.03952 * 286.84654 * 19 18 17 32 32 H 1.09002 * 109.43751 * 168.62139 * 20 19 18 33 33 H 1.08999 * 109.43414 * 48.70565 * 20 19 18 34 34 H 1.08994 * 109.78539 * 44.43819 * 21 16 15 35 35 H 1.08998 * 109.78601 * 283.61137 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3812 10 1 6.5988 1.5445 -0.1931 11 1 6.4962 -0.5188 -1.4626 12 1 6.4000 1.6159 -2.6092 13 7 1.6523 2.0976 1.2518 14 6 2.0007 1.7143 2.5026 15 7 1.4660 2.5438 3.3617 16 6 0.7708 3.4689 2.7001 17 6 0.8747 3.2051 1.3777 18 6 0.2179 4.0340 0.3052 19 7 -0.8193 4.8681 0.9373 20 6 -0.2851 5.6063 2.0902 21 6 -0.0190 4.6327 3.2472 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8293 -0.0610 -2.9499 28 1 2.6190 0.8643 2.7505 29 1 0.9615 4.6711 -0.1738 30 1 -0.2391 3.3795 -0.4370 31 1 -1.6189 4.3128 1.2025 32 1 -1.0089 6.3571 2.4073 33 1 0.6461 6.0970 1.8068 34 1 0.5548 5.1342 4.0264 35 1 -0.9650 4.2772 3.6556 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165710.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = 29.812324 kcal Electronic energy + Delta-G solvation = -17188.296671 eV Core-core repulsion = 14606.709792 eV Total energy + Delta-G solvation = -2581.586880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.13807 -38.27688 -37.10237 -34.28226 -32.91005 -31.09442 -30.36779 -28.80698 -25.42801 -24.93928 -23.62791 -23.16598 -20.85228 -20.21734 -18.64640 -17.71789 -16.94108 -16.38212 -16.07280 -15.67935 -15.44184 -14.88280 -14.73433 -14.44086 -14.15998 -13.71914 -13.54193 -13.30804 -13.15197 -12.92535 -12.78833 -12.60289 -12.24584 -12.01323 -11.95272 -11.74902 -11.41661 -10.87565 -10.61803 -10.15608 -9.62111 -8.93191 -8.31633 -6.48671 1.26763 1.35430 1.40063 1.49830 2.18091 2.22538 2.39044 2.97602 3.27647 3.66823 3.91996 4.14055 4.21602 4.25360 4.31215 4.37215 4.50541 4.58064 4.62914 4.71321 4.86572 4.90401 5.02056 5.10572 5.13067 5.18747 5.31707 5.47778 5.67885 5.72773 5.90330 5.98388 6.10367 6.37981 6.42819 6.68649 7.22665 7.28554 8.72360 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.007947 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.440252 B = 3522.402839 C = 3658.385707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.267 3.733 4 H 0.038 0.962 5 C -0.554 4.554 6 H 0.049 0.951 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.961 3.039 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.276 1.276 13 N -0.407 5.407 14 C 0.161 3.839 15 N -0.522 5.522 16 C -0.038 4.038 17 C -0.083 4.083 18 C 0.145 3.855 19 N -0.665 5.665 20 C 0.063 3.937 21 C -0.058 4.058 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.040 0.960 27 H 0.272 0.728 28 H 0.199 0.801 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.350 0.650 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 4.914 3.921 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.056 0.944 5 C -0.592 4.592 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.538 5.538 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.198 1.198 12 H -0.202 1.202 13 N -0.084 5.084 14 C -0.121 4.121 15 N -0.241 5.241 16 C -0.171 4.171 17 C -0.204 4.204 18 C 0.013 3.987 19 N -0.293 5.293 20 C -0.066 4.066 21 C -0.098 4.098 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.216 0.784 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.626 5.204 3.966 9.312 hybrid contribution 1.427 -1.182 -0.381 1.891 sum -5.199 4.022 3.584 7.487 Atomic orbital electron populations 1.21672 0.96093 1.01313 1.00131 1.21791 0.94605 0.97123 1.02523 1.19134 0.94814 0.90760 0.78632 0.94422 1.21410 0.90995 1.40072 1.06765 0.93269 1.25507 1.02750 0.93840 0.94678 1.69918 1.36817 1.37428 1.09655 0.85452 0.79719 0.78205 0.77976 1.20147 1.19760 1.20152 1.45665 1.33638 1.20046 1.09043 1.24854 1.04703 1.02597 0.79897 1.69812 1.14330 1.06141 1.33835 1.20999 1.05498 1.00731 0.89845 1.22406 1.04290 0.94444 0.99255 1.20380 0.93359 0.92522 0.92399 1.60915 1.07867 1.29822 1.30726 1.22199 1.01294 0.95502 0.87649 1.20731 0.98238 0.91555 0.99288 0.94763 0.93306 0.91959 0.89114 0.94120 0.91895 0.78417 0.90532 0.90249 0.83189 0.86637 0.91678 0.90177 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.80 71.98 0.71 -4.28 16 2 C -0.12 -5.34 5.24 30.59 0.16 -5.18 16 3 C 0.27 12.58 2.35 44.24 0.10 12.68 16 4 H 0.04 1.91 7.49 -2.38 -0.02 1.89 16 5 C -0.55 -28.76 8.51 25.60 0.22 -28.54 16 6 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 7 C 0.03 1.75 5.29 84.66 0.45 2.20 16 8 N -0.90 -46.67 11.29 21.45 0.24 -46.42 16 9 Si 0.96 41.15 29.54 68.60 2.03 43.17 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.41 -17.76 2.04 -495.89 -1.01 -18.78 16 14 C 0.16 6.97 11.56 180.05 2.08 9.05 16 15 N -0.52 -22.34 11.24 -187.76 -2.11 -24.45 16 16 C -0.04 -1.46 7.07 41.72 0.30 -1.17 16 17 C -0.08 -3.26 6.81 41.21 0.28 -2.98 16 18 C 0.14 4.78 6.41 85.44 0.55 5.33 16 19 N -0.67 -17.27 6.88 -515.88 -3.55 -20.82 16 20 C 0.06 1.48 6.54 86.47 0.57 2.05 16 21 C -0.06 -1.61 6.42 30.10 0.19 -1.42 16 22 H 0.03 1.27 7.75 -2.39 -0.02 1.25 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.09 4.39 5.95 -2.39 -0.01 4.38 16 26 H 0.04 1.76 7.81 -2.39 -0.02 1.74 16 27 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 28 H 0.20 8.01 8.06 -2.91 -0.02 7.98 16 29 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.08 2.62 8.02 -2.39 -0.02 2.60 16 31 H 0.35 8.22 8.79 -89.70 -0.79 7.43 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.66 8.07 -2.39 -0.02 1.65 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -57.25 285.17 1.49 -55.76 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.29 Total: 23.77 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 5.60 Total: -12.24 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -6.43 Total: -110.47 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -57.25 1.49 -55.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165710.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.573 kcal (2) G-P(sol) polarization free energy of solvation -57.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds