Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 H 1.09002 * 109.46867 * 305.58498 * 3 2 1 5 5 C 1.50701 * 109.47321 * 65.57911 * 3 2 1 6 6 H 1.08009 * 119.99562 * 65.16875 * 5 3 2 7 7 C 1.37869 * 120.00671 * 244.89036 * 5 3 2 8 8 N 1.31517 * 120.00413 * 175.83709 * 7 5 3 9 9 Si 1.86804 * 119.99746 * 355.84255 * 7 5 3 10 10 H 1.48506 * 109.47119 * 85.42084 * 9 7 5 11 11 H 1.48497 * 109.47198 * 205.42301 * 9 7 5 12 12 H 1.48500 * 109.47075 * 325.41969 * 9 7 5 13 13 N 1.46496 * 109.47363 * 185.58535 * 3 2 1 14 14 C 1.35388 * 126.49877 * 299.68669 * 13 3 2 15 15 N 1.30841 * 108.78370 * 179.84460 * 14 13 3 16 16 C 1.33297 * 109.10142 * 0.36406 * 15 14 13 17 17 C 1.35251 * 108.04952 * 359.83501 * 16 15 14 18 18 C 1.50620 * 123.73398 * 179.76679 * 17 16 15 19 19 N 1.47323 * 108.27552 * 343.74822 * 18 17 16 20 20 C 1.46952 * 111.41935 * 51.03475 * 19 18 17 21 21 C 1.50916 * 128.91760 * 179.86818 * 16 15 14 22 22 H 1.09004 * 109.47027 * 174.66530 * 1 2 3 23 23 H 1.09004 * 109.47218 * 294.66171 * 1 2 3 24 24 H 1.08996 * 109.47435 * 54.66028 * 1 2 3 25 25 H 1.09001 * 109.47130 * 239.99823 * 2 1 3 26 26 H 1.09003 * 109.46804 * 119.99905 * 2 1 3 27 27 H 0.97004 * 119.99674 * 180.02562 * 8 7 5 28 28 H 1.08001 * 125.60574 * 359.97438 * 14 13 3 29 29 H 1.08997 * 109.70433 * 103.44292 * 18 17 16 30 30 H 1.09002 * 109.70265 * 224.05419 * 18 17 16 31 31 H 1.00903 * 111.00565 * 175.29114 * 19 18 17 32 32 H 1.08996 * 109.44003 * 168.64570 * 20 19 18 33 33 H 1.09006 * 109.39991 * 48.75068 * 20 19 18 34 34 H 1.09000 * 109.78202 * 283.64492 * 21 16 15 35 35 H 1.09002 * 109.78466 * 44.46463 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9843 -0.8358 5 6 1.6536 2.1119 1.2937 6 1 2.0695 1.7630 2.2275 7 6 0.7739 3.1734 1.2848 8 7 0.3731 3.7049 2.4191 9 14 0.1509 3.8566 -0.3383 10 1 -1.0277 3.0717 -0.7860 11 1 -0.2398 5.2781 -0.1598 12 1 1.2249 3.7630 -1.3596 13 7 3.4988 1.4447 -0.1344 14 6 4.3866 0.8765 0.7152 15 7 5.5961 1.0839 0.2612 16 6 5.5233 1.7860 -0.8694 17 6 4.2178 2.0226 -1.1325 18 6 3.7327 2.7957 -2.3306 19 7 4.8723 3.5428 -2.8907 20 6 6.0322 2.6675 -3.1098 21 6 6.6425 2.2704 -1.7584 22 1 -0.3633 -1.0232 -0.0955 23 1 -0.3634 0.4288 0.9340 24 1 -0.3634 0.5944 -0.8383 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 -0.2462 4.4515 2.4128 28 1 4.1374 0.3387 1.6180 29 1 3.3416 2.1066 -3.0790 30 1 2.9507 3.4917 -2.0268 31 1 4.6108 4.0164 -3.7424 32 1 6.7781 3.1957 -3.7036 33 1 5.7138 1.7708 -3.6415 34 1 7.1267 3.1349 -1.3041 35 1 7.3708 1.4724 -1.9028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = 31.845767 kcal Electronic energy + Delta-G solvation = -17233.927944 eV Core-core repulsion = 14652.429241 eV Total energy + Delta-G solvation = -2581.498703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.05729 -38.14520 -37.16116 -34.36033 -33.31048 -31.29739 -30.51342 -28.84218 -25.63620 -25.05297 -23.49887 -22.96088 -20.88395 -19.85236 -19.05419 -18.03510 -16.83382 -16.61182 -16.10297 -15.67032 -15.47424 -15.10872 -14.81278 -14.73835 -14.37975 -13.95505 -13.85192 -13.27745 -12.93550 -12.88663 -12.72435 -12.43208 -12.25737 -12.02155 -11.90569 -11.76817 -11.37978 -10.92263 -10.68039 -10.19617 -9.46795 -8.86984 -8.46503 -6.58235 1.21328 1.24639 1.33482 1.35299 2.12409 2.18324 2.27239 2.98063 3.25324 3.65167 3.81864 3.95697 4.16405 4.28168 4.32180 4.34775 4.40190 4.50919 4.54039 4.62619 4.82101 4.88424 4.91821 5.07017 5.12105 5.19198 5.21901 5.29302 5.51502 5.66357 5.92590 5.97851 6.14790 6.49915 6.53632 6.58123 7.10037 7.31966 8.68482 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.009917 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.687419 B = 2822.798997 C = 3190.495998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.218 3.782 4 H 0.067 0.933 5 C -0.522 4.522 6 H 0.041 0.959 7 C 0.035 3.965 8 N -0.926 5.926 9 Si 0.922 3.078 10 H -0.246 1.246 11 H -0.287 1.287 12 H -0.240 1.240 13 N -0.417 5.417 14 C 0.165 3.835 15 N -0.526 5.526 16 C -0.027 4.027 17 C -0.060 4.060 18 C 0.139 3.861 19 N -0.691 5.691 20 C 0.067 3.933 21 C -0.025 4.025 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.272 0.728 28 H 0.200 0.800 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.365 0.635 32 H 0.114 0.886 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -3.221 -13.947 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.118 3.882 4 H 0.084 0.916 5 C -0.560 4.560 6 H 0.059 0.941 7 C -0.167 4.167 8 N -0.563 5.563 9 Si 0.745 3.255 10 H -0.170 1.170 11 H -0.214 1.214 12 H -0.165 1.165 13 N -0.095 5.095 14 C -0.116 4.116 15 N -0.245 5.245 16 C -0.159 4.159 17 C -0.179 4.179 18 C 0.009 3.991 19 N -0.326 5.326 20 C -0.062 4.062 21 C -0.064 4.064 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.217 0.783 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.615 -3.160 -12.849 14.013 hybrid contribution -1.559 0.338 -0.588 1.700 sum 3.056 -2.822 -13.437 14.066 Atomic orbital electron populations 1.21590 0.94050 1.01899 1.01668 1.21733 0.97488 0.94808 1.01014 1.19895 0.74247 0.96656 0.97386 0.91556 1.21041 1.26770 1.16227 0.91968 0.94057 1.25861 0.95545 0.95459 0.99839 1.70003 1.33151 1.24814 1.28379 0.86180 0.80398 0.78354 0.80525 1.16964 1.21353 1.16471 1.46230 1.09346 1.36977 1.16986 1.24829 0.83828 1.04082 0.98897 1.69798 1.22926 1.19756 1.12043 1.20989 0.94117 1.04078 0.96738 1.21258 0.93024 1.06826 0.96819 1.20258 0.93267 0.94539 0.91065 1.60069 1.05879 1.31467 1.35181 1.22021 0.92988 0.95707 0.95470 1.20075 0.93418 1.00064 0.92795 0.90526 0.93482 0.93269 0.92318 0.92330 0.91867 0.78310 0.92553 0.91029 0.81413 0.86808 0.94327 0.91048 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.65 71.98 0.69 -3.85 16 2 C -0.11 -4.12 5.39 30.59 0.16 -3.95 16 3 C 0.22 9.47 2.40 44.25 0.11 9.57 16 4 H 0.07 2.82 3.94 -2.39 -0.01 2.81 16 5 C -0.52 -27.55 7.94 25.60 0.20 -27.35 16 6 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 7 C 0.03 1.87 5.47 84.65 0.46 2.33 16 8 N -0.93 -54.39 13.96 21.44 0.30 -54.09 16 9 Si 0.92 39.70 27.13 68.60 1.86 41.56 16 10 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.24 -9.51 4.53 99.48 0.45 -9.06 16 13 N -0.42 -18.31 2.59 -495.90 -1.29 -19.60 16 14 C 0.16 7.27 11.82 180.05 2.13 9.40 16 15 N -0.53 -23.32 11.24 -187.75 -2.11 -25.43 16 16 C -0.03 -1.09 7.07 41.72 0.30 -0.79 16 17 C -0.06 -2.46 6.81 41.21 0.28 -2.17 16 18 C 0.14 4.61 6.41 85.45 0.55 5.16 16 19 N -0.69 -18.55 6.82 -516.00 -3.52 -22.07 16 20 C 0.07 1.56 6.51 86.46 0.56 2.12 16 21 C -0.02 -0.75 6.52 30.09 0.20 -0.55 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.05 1.84 7.57 -2.38 -0.02 1.82 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.20 8.11 8.06 -2.91 -0.02 8.09 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.61 6.02 -2.39 -0.01 2.60 16 31 H 0.36 7.16 8.90 -89.69 -0.80 6.36 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.04 0.86 8.07 -2.38 -0.02 0.84 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -65.82 280.51 0.92 -64.90 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.03 Total: 24.80 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.64 Total: -10.08 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.62 Total: -121.18 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.86 Total: 41.56 kcal Total: -65.82 0.92 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.749 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds