Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.46930 * 111.00366 * 190.33205 * 13 3 2 15 15 C 1.53423 * 109.89164 * 164.64812 * 14 13 3 16 16 N 1.46529 * 108.14147 * 50.04301 * 15 14 13 17 17 C 1.34133 * 129.34420 * 163.36736 * 16 15 14 18 18 N 1.30874 * 108.50636 * 180.32409 * 17 16 15 19 19 C 1.34495 * 109.33803 * 359.90925 * 18 17 16 20 20 C 1.33662 * 107.79385 * 359.97438 * 19 18 17 21 21 C 1.47425 * 111.00036 * 66.04037 * 13 3 2 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.40465 * 284.76341 * 14 13 3 29 29 H 1.08998 * 109.40700 * 44.51249 * 14 13 3 30 30 H 1.08998 * 109.70513 * 290.39208 * 15 14 13 31 31 H 1.08998 * 109.78829 * 169.74204 * 15 14 13 32 32 H 1.07999 * 125.74510 * 0.33153 * 17 16 15 33 33 H 1.08004 * 126.10257 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.77619 * 293.81284 * 21 13 3 35 35 H 1.09002 * 109.76768 * 54.54733 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9053 3.5452 1.1935 15 6 1.1574 4.2554 2.3294 16 7 1.4620 3.5586 3.5819 17 6 1.2948 3.9715 4.8471 18 7 1.7098 3.0258 5.6510 19 6 2.1507 1.9843 4.9231 20 6 2.0028 2.2965 3.6319 21 6 2.3366 1.4849 2.4070 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 2.9749 3.7297 1.2937 29 1 1.5605 3.9328 0.2350 30 1 0.0844 4.2211 2.1407 31 1 1.4862 5.2924 2.3959 32 1 0.8864 4.9239 5.1511 33 1 2.5519 1.0602 5.3125 34 1 1.9902 0.4599 2.5384 35 1 3.4140 1.4916 2.2415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = 67.763817 kcal Electronic energy + Delta-G solvation = -17217.736123 eV Core-core repulsion = 14637.794944 eV Total energy + Delta-G solvation = -2579.941179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.86166 -37.62524 -34.37493 -32.50030 -31.30291 -30.25808 -28.26825 -26.40489 -24.68945 -23.29309 -21.84042 -21.05405 -19.42677 -18.59163 -16.96037 -16.39155 -15.66402 -15.00011 -14.52744 -14.02912 -13.66542 -13.39390 -13.22156 -12.83303 -12.75905 -12.37096 -11.90967 -11.63213 -11.36342 -11.09682 -10.98663 -10.84320 -10.68002 -10.15192 -9.77267 -9.67941 -9.56997 -9.24725 -9.12163 -8.48355 -8.01664 -7.32457 -6.11894 -4.26147 2.48807 3.18006 3.19940 3.27673 3.30011 3.50968 4.29596 4.66628 4.95290 4.98696 5.12484 5.20186 5.40840 5.46476 5.70486 5.98596 6.05107 6.26733 6.27981 6.34973 6.41484 6.47416 6.58794 6.77283 6.97088 7.07034 7.11449 7.18443 7.44685 7.58550 7.63243 7.76345 7.98229 8.06514 8.28647 8.41143 8.81899 9.42522 10.87761 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.008158 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.182275 B = 3431.577105 C = 3802.977132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.216 3.784 4 H 0.042 0.958 5 C -0.551 4.551 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.049 3.951 15 C 0.108 3.892 16 N -0.449 5.449 17 C 0.166 3.834 18 N -0.503 5.503 19 C -0.042 4.042 20 C 0.001 3.999 21 C 0.126 3.874 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.095 0.905 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.198 0.802 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 5.185 5.754 8.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.110 3.890 4 H 0.059 0.941 5 C -0.590 4.590 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.259 5.259 14 C -0.080 4.080 15 C -0.015 4.015 16 N -0.133 5.133 17 C -0.115 4.115 18 N -0.222 5.222 19 C -0.189 4.189 20 C -0.115 4.115 21 C -0.003 4.003 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.214 0.786 33 H 0.182 0.818 34 H 0.109 0.891 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.463 5.168 6.355 9.328 hybrid contribution 1.890 0.142 -1.143 2.214 sum -2.573 5.310 5.212 7.873 Atomic orbital electron populations 1.21710 0.98758 0.98642 1.00492 1.21601 0.92335 0.98844 1.02204 1.19336 0.93336 0.91438 0.84845 0.94051 1.21690 0.92584 1.38821 1.05916 0.92483 1.24890 0.97985 0.94737 0.95539 1.69866 1.34952 1.37692 1.09462 0.86660 0.85906 0.78530 0.77327 1.20506 1.21113 1.20073 1.62637 1.56820 1.01069 1.05406 1.22143 0.98271 0.90916 0.96693 1.22220 1.01712 0.95756 0.81800 1.45402 1.46422 1.14125 1.07336 1.24551 1.06468 1.01178 0.79350 1.70465 1.17036 1.01411 1.33323 1.21642 1.08505 0.99609 0.89145 1.21686 1.04434 0.87429 0.97962 1.20747 0.98605 0.96360 0.84542 0.94218 0.95415 0.93480 0.88711 0.94775 0.92698 0.93750 0.89308 0.89696 0.89753 0.78555 0.81765 0.89101 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.80 37.16 0.36 -2.33 16 2 C -0.11 -2.48 5.16 -26.73 -0.14 -2.62 16 3 C 0.22 4.91 1.70 -68.87 -0.12 4.79 16 4 H 0.04 1.04 7.86 -51.93 -0.41 0.63 16 5 C -0.55 -13.75 7.24 -34.44 -0.25 -14.00 16 6 H 0.06 1.44 5.91 -52.49 -0.31 1.13 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -23.54 11.28 55.43 0.63 -22.92 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.53 -10.43 4.05 -228.73 -0.93 -11.35 16 14 C 0.05 0.84 5.12 -3.59 -0.02 0.82 16 15 C 0.11 1.48 7.27 -3.81 -0.03 1.45 16 16 N -0.45 -7.20 3.14 -114.02 -0.36 -7.55 16 17 C 0.17 2.53 12.70 -90.88 -1.15 1.37 16 18 N -0.50 -8.90 11.28 -14.95 -0.17 -9.07 16 19 C -0.04 -0.74 11.85 -17.99 -0.21 -0.96 16 20 C 0.00 0.01 6.67 -81.71 -0.54 -0.53 16 21 C 0.13 2.41 5.16 -4.70 -0.02 2.38 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 25 H 0.09 2.38 5.94 -51.93 -0.31 2.07 16 26 H 0.03 0.75 6.47 -51.93 -0.34 0.41 16 27 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.04 0.83 7.55 -51.93 -0.39 0.44 16 29 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.17 2.53 8.06 -52.48 -0.42 2.11 16 34 H 0.09 1.73 6.70 -51.93 -0.35 1.38 16 35 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -28.01 277.52 -8.78 -36.79 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.89 Total: 2.54 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.22 Total: -7.86 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.83 Total: -50.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.01 -8.78 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.552 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds