Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.46930 * 111.00366 * 190.33205 * 13 3 2 15 15 C 1.53423 * 109.89164 * 164.64812 * 14 13 3 16 16 N 1.46529 * 108.14147 * 50.04301 * 15 14 13 17 17 C 1.34133 * 129.34420 * 163.36736 * 16 15 14 18 18 N 1.30874 * 108.50636 * 180.32409 * 17 16 15 19 19 C 1.34495 * 109.33803 * 359.90925 * 18 17 16 20 20 C 1.33662 * 107.79385 * 359.97438 * 19 18 17 21 21 C 1.47425 * 111.00036 * 66.04037 * 13 3 2 22 22 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 23 23 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.40465 * 284.76341 * 14 13 3 29 29 H 1.08998 * 109.40700 * 44.51249 * 14 13 3 30 30 H 1.08998 * 109.70513 * 290.39208 * 15 14 13 31 31 H 1.08998 * 109.78829 * 169.74204 * 15 14 13 32 32 H 1.07999 * 125.74510 * 0.33153 * 17 16 15 33 33 H 1.08004 * 126.10257 * 180.02562 * 19 18 17 34 34 H 1.08997 * 109.77619 * 293.81284 * 21 13 3 35 35 H 1.09002 * 109.76768 * 54.54733 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9053 3.5452 1.1935 15 6 1.1574 4.2554 2.3294 16 7 1.4620 3.5586 3.5819 17 6 1.2948 3.9715 4.8471 18 7 1.7098 3.0258 5.6510 19 6 2.1507 1.9843 4.9231 20 6 2.0028 2.2965 3.6319 21 6 2.3366 1.4849 2.4070 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 2.9749 3.7297 1.2937 29 1 1.5605 3.9328 0.2350 30 1 0.0844 4.2211 2.1407 31 1 1.4862 5.2924 2.3959 32 1 0.8864 4.9239 5.1511 33 1 2.5519 1.0602 5.3125 34 1 1.9902 0.4599 2.5384 35 1 3.4140 1.4916 2.2415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = 51.917690 kcal Electronic energy + Delta-G solvation = -17218.423263 eV Core-core repulsion = 14637.794944 eV Total energy + Delta-G solvation = -2580.628319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.13511 -39.21309 -35.88380 -34.18784 -32.99033 -31.63846 -29.70104 -28.12283 -26.20534 -24.90697 -23.30668 -22.33602 -21.11065 -20.08101 -18.23935 -18.22432 -17.01836 -16.72754 -16.00624 -15.65948 -15.18880 -14.80894 -14.58211 -14.43542 -14.15330 -13.86623 -13.43104 -13.23007 -13.06640 -12.77446 -12.61519 -12.53664 -12.32210 -11.94397 -11.58420 -11.35731 -11.06467 -10.92174 -10.45097 -10.35218 -9.41504 -8.94590 -8.07216 -6.28606 1.21341 1.35959 1.39763 1.46309 1.98722 2.22902 2.38211 3.12254 3.19976 3.76759 3.80640 3.95901 4.16435 4.29214 4.47502 4.54346 4.69746 4.73121 4.73712 4.84954 4.89973 4.92281 5.01206 5.20912 5.41818 5.42241 5.45782 5.60366 5.75123 5.79304 5.98708 6.10188 6.28188 6.45184 6.50432 6.89446 7.15019 7.42438 8.88727 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.008158 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.182275 B = 3431.577105 C = 3802.977132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.224 3.776 4 H 0.016 0.984 5 C -0.555 4.555 6 H 0.049 0.951 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.532 5.532 14 C 0.046 3.954 15 C 0.116 3.884 16 N -0.453 5.453 17 C 0.185 3.815 18 N -0.534 5.534 19 C -0.047 4.047 20 C -0.024 4.024 21 C 0.138 3.862 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.243 0.757 33 H 0.175 0.825 34 H 0.085 0.915 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 6.607 6.828 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.117 3.883 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.067 0.933 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.255 5.255 14 C -0.083 4.083 15 C -0.006 4.006 16 N -0.136 5.136 17 C -0.097 4.097 18 N -0.254 5.254 19 C -0.193 4.193 20 C -0.140 4.140 21 C 0.009 3.991 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.259 0.741 33 H 0.192 0.808 34 H 0.103 0.897 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.168 6.598 7.429 11.200 hybrid contribution 2.091 -0.246 -1.437 2.549 sum -3.077 6.352 5.993 9.259 Atomic orbital electron populations 1.21558 0.96331 0.99812 1.00569 1.21458 0.94452 0.98168 1.00541 1.19080 0.91888 0.91682 0.85602 0.96640 1.21916 0.93942 1.38073 1.05420 0.93309 1.25516 1.01380 0.94818 0.95550 1.69976 1.36169 1.38504 1.09845 0.85812 0.81875 0.78287 0.77167 1.20415 1.20857 1.20049 1.62573 1.56469 1.02416 1.04077 1.22226 0.97693 0.89634 0.98775 1.22322 1.02213 0.96723 0.79335 1.45574 1.46137 1.13499 1.08420 1.25446 1.03949 1.01812 0.78459 1.70494 1.18605 1.02162 1.34153 1.21909 1.08035 1.00223 0.89172 1.21448 1.06586 0.88664 0.97315 1.20491 0.96917 0.96579 0.85157 0.94499 0.93726 0.92862 0.91626 0.95062 0.92799 0.95883 0.88987 0.87948 0.85874 0.74075 0.80825 0.89696 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.80 71.98 0.71 -4.08 16 2 C -0.11 -4.87 5.16 30.59 0.16 -4.71 16 3 C 0.22 10.37 1.70 44.17 0.08 10.44 16 4 H 0.02 0.80 7.86 -2.38 -0.02 0.79 16 5 C -0.55 -28.25 7.24 25.60 0.19 -28.06 16 6 H 0.05 2.53 5.91 -2.91 -0.02 2.51 16 7 C 0.03 1.47 5.29 84.66 0.45 1.92 16 8 N -0.91 -49.33 11.28 21.45 0.24 -49.09 16 9 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 13 N -0.53 -20.62 4.05 -877.58 -3.56 -24.18 16 14 C 0.05 1.52 5.12 86.44 0.44 1.96 16 15 C 0.12 2.79 7.27 86.52 0.63 3.42 16 16 N -0.45 -13.24 3.14 -514.65 -1.61 -14.86 16 17 C 0.19 4.95 12.70 180.44 2.29 7.24 16 18 N -0.53 -17.68 11.28 -201.20 -2.27 -19.95 16 19 C -0.05 -1.59 11.85 83.25 0.99 -0.61 16 20 C -0.02 -0.85 6.67 40.64 0.27 -0.58 16 21 C 0.14 5.28 5.16 85.45 0.44 5.72 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.95 7.75 -2.38 -0.02 1.93 16 25 H 0.07 3.38 5.94 -2.38 -0.01 3.36 16 26 H 0.03 1.39 6.47 -2.39 -0.02 1.37 16 27 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 28 H 0.02 0.86 7.55 -2.39 -0.02 0.84 16 29 H 0.09 2.96 7.81 -2.39 -0.02 2.94 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.24 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.17 5.27 8.06 -2.91 -0.02 5.25 16 34 H 0.08 3.28 6.70 -2.39 -0.02 3.27 16 35 H 0.04 1.89 5.97 -2.39 -0.01 1.88 16 Total: -1.00 -60.58 277.52 2.54 -58.05 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.07 Total: 13.23 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.63 Total: -7.33 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -7.20 Total: -108.07 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -60.58 2.54 -58.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.967 kcal (2) G-P(sol) polarization free energy of solvation -60.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds