Wall clock time and date at job start Sun Mar 29 2020 22:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47288 * 2 1 4 4 H 1.08991 * 109.47206 * 302.47181 * 3 2 1 5 5 C 1.50701 * 109.47298 * 182.46778 * 3 2 1 6 6 H 1.07993 * 120.00437 * 240.00222 * 5 3 2 7 7 C 1.37885 * 119.99700 * 60.00090 * 5 3 2 8 8 N 1.31515 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46809 * 90.00267 * 9 7 5 11 11 H 1.48498 * 109.47379 * 210.00002 * 9 7 5 12 12 H 1.48500 * 109.47082 * 330.00664 * 9 7 5 13 13 N 1.46903 * 109.46845 * 62.47401 * 3 2 1 14 14 C 1.48107 * 111.00296 * 63.67899 * 13 3 2 15 15 C 1.51174 * 105.56856 * 92.03252 * 14 13 3 16 16 C 1.39870 * 143.42898 * 197.31883 * 15 14 13 17 17 N 1.30824 * 108.23060 * 179.97438 * 16 15 14 18 18 N 1.40076 * 108.21845 * 0.02562 * 17 16 15 19 19 C 1.46495 * 126.03224 * 180.02562 * 18 17 16 20 20 C 1.34910 * 107.93993 * 0.25735 * 18 17 16 21 21 C 1.48113 * 111.00068 * 178.11363 * 13 3 2 22 22 H 1.09005 * 109.47409 * 174.68492 * 1 2 3 23 23 H 1.09000 * 109.47633 * 294.68796 * 1 2 3 24 24 H 1.08998 * 109.47034 * 54.68604 * 1 2 3 25 25 H 1.09000 * 109.47204 * 239.99959 * 2 1 3 26 26 H 1.08998 * 109.47223 * 120.00043 * 2 1 3 27 27 H 0.96996 * 120.00097 * 179.97438 * 8 7 5 28 28 H 1.08998 * 110.22836 * 333.00782 * 14 13 3 29 29 H 1.09006 * 110.22877 * 211.05585 * 14 13 3 30 30 H 1.07996 * 125.87647 * 0.02562 * 16 15 14 31 31 H 1.09000 * 109.47632 * 90.02250 * 19 18 17 32 32 H 1.08998 * 109.47112 * 210.02628 * 19 18 17 33 33 H 1.08998 * 109.46763 * 330.02171 * 19 18 17 34 34 H 1.09006 * 110.22605 * 26.98393 * 21 13 3 35 35 H 1.08996 * 110.23333 * 148.85223 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9689 -0.8669 5 6 3.5457 1.4429 -0.0612 6 1 4.1183 1.8990 0.7328 7 6 4.1924 0.8610 -1.1309 8 7 3.4950 0.3060 -2.0981 9 14 6.0588 0.8621 -1.2072 10 1 6.5819 -0.3600 -0.5452 11 1 6.4962 0.8822 -2.6261 12 1 6.5819 2.0648 -0.5107 13 7 1.5997 2.1175 1.2283 14 6 2.1951 1.4815 2.4260 15 6 3.4726 2.2430 2.6971 16 6 4.6912 2.1852 3.3811 17 7 5.3511 3.2878 3.1356 18 7 4.5722 4.0845 2.2867 19 6 4.9391 5.4039 1.7663 20 6 3.4223 3.4248 2.0369 21 6 2.1137 3.5054 1.2846 22 1 -0.3634 -1.0233 -0.0952 23 1 -0.3634 0.4292 0.9337 24 1 -0.3633 0.5940 -0.8386 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9499 -0.1030 -2.8508 28 1 2.4165 0.4333 2.2255 29 1 1.5171 1.5685 3.2752 30 1 5.0294 1.3702 4.0037 31 1 5.4667 5.2873 0.8196 32 1 4.0377 5.9961 1.6093 33 1 5.5861 5.9099 2.4828 34 1 2.2778 3.8878 0.2771 35 1 1.4129 4.1455 1.8206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172574.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:01 Heat of formation + Delta-G solvation = 112.007025 kcal Electronic energy + Delta-G solvation = -17574.041013 eV Core-core repulsion = 14996.018363 eV Total energy + Delta-G solvation = -2578.022650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20064 -37.51617 -33.44939 -32.67982 -31.50824 -28.70522 -27.66647 -26.56468 -25.59882 -23.26484 -21.82762 -20.08895 -19.19658 -18.77592 -16.63566 -15.91190 -15.43813 -14.74774 -14.24779 -13.97367 -13.51136 -12.95506 -12.70337 -12.64685 -12.20277 -11.97769 -11.67179 -11.29709 -11.14156 -11.09980 -10.94239 -10.79818 -10.68794 -10.41745 -10.03743 -9.67737 -9.53465 -9.12421 -8.62113 -8.33834 -7.59268 -7.27402 -5.97937 -4.06630 2.46462 2.91830 3.27848 3.35068 3.41615 3.45574 4.43893 4.86347 4.94631 5.25605 5.31031 5.42857 5.59125 5.64020 5.65985 6.13740 6.15162 6.29415 6.37825 6.43470 6.53600 6.59988 6.66312 6.91932 7.03737 7.11882 7.21279 7.29060 7.55154 7.59051 7.76969 7.91615 8.06930 8.14923 8.30364 8.43258 9.05014 9.61660 11.04048 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.013664 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.353737 B = 2048.619871 C = 2933.921695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.199 3.801 4 H 0.041 0.959 5 C -0.547 4.547 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.493 5.493 14 C 0.120 3.880 15 C -0.262 4.262 16 C 0.068 3.932 17 N -0.312 5.312 18 N -0.357 5.357 19 C 0.106 3.894 20 C 0.055 3.945 21 C 0.125 3.875 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.259 0.741 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.174 0.826 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 5.739 6.614 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.093 3.907 4 H 0.059 0.941 5 C -0.586 4.586 6 H 0.097 0.903 7 C -0.133 4.133 8 N -0.528 5.528 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.214 5.214 14 C -0.009 4.009 15 C -0.274 4.274 16 C -0.116 4.116 17 N -0.133 5.133 18 N -0.139 5.139 19 C -0.036 4.036 20 C -0.075 4.075 21 C -0.007 4.007 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.191 0.809 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.461 6.402 6.560 9.283 hybrid contribution 1.633 -0.511 -0.463 1.772 sum 0.171 5.892 6.098 8.481 Atomic orbital electron populations 1.21717 0.98748 0.98528 1.00587 1.21627 0.92216 0.98914 1.02298 1.19611 0.93484 0.91359 0.86282 0.94074 1.22282 0.92463 1.36990 1.06847 0.90331 1.24889 0.97483 0.95220 0.95669 1.69881 1.34777 1.38161 1.09989 0.86755 0.86920 0.78513 0.76829 1.20712 1.21402 1.20331 1.65778 1.50955 1.00159 1.04545 1.20904 0.88487 0.98737 0.92769 1.21450 0.99681 0.99152 1.07145 1.22975 0.92365 0.96223 1.00068 1.77295 1.18262 1.04756 1.13027 1.47571 1.12117 1.15690 1.38511 1.21730 1.01981 0.80320 0.99572 1.22549 0.91290 0.94043 0.99654 1.21204 0.86322 0.94621 0.98520 0.95496 0.93500 0.94102 0.88796 0.94551 0.93112 0.90107 0.91614 0.80885 0.91186 0.89934 0.90064 0.90246 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.71 37.15 0.36 -2.34 16 2 C -0.11 -2.58 5.10 -26.73 -0.14 -2.71 16 3 C 0.20 4.73 1.68 -68.86 -0.12 4.61 16 4 H 0.04 1.08 8.12 -51.93 -0.42 0.66 16 5 C -0.55 -14.35 7.11 -34.44 -0.24 -14.59 16 6 H 0.08 2.10 3.78 -52.49 -0.20 1.90 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.29 16 9 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.49 -10.03 5.02 -228.24 -1.15 -11.18 16 14 C 0.12 2.34 6.09 -4.08 -0.02 2.32 16 15 C -0.26 -5.28 5.14 -104.77 -0.54 -5.82 16 16 C 0.07 1.32 12.02 -17.37 -0.21 1.11 16 17 N -0.31 -6.31 12.57 30.62 0.39 -5.93 16 18 N -0.36 -6.80 4.01 -63.70 -0.26 -7.06 16 19 C 0.11 1.49 11.47 59.84 0.69 2.17 16 20 C 0.05 1.08 5.96 -82.01 -0.49 0.60 16 21 C 0.12 2.32 6.34 -4.09 -0.03 2.29 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.86 7.84 -51.93 -0.41 0.46 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 26 H 0.04 0.82 6.10 -51.93 -0.32 0.51 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.08 1.68 5.66 -51.93 -0.29 1.39 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.53 7.75 -51.93 -0.40 1.13 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 278.31 15.07 4.19 4.19 Total: -1.00 -30.20 278.31 -6.92 -37.12 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.87 Total: 0.67 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.83 Total: -10.57 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.39 Total: -48.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.20 -6.92 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172574.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.124 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds