Wall clock time and date at job start Sun Mar 29 2020 22:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47288 * 2 1 4 4 H 1.08991 * 109.47206 * 302.47181 * 3 2 1 5 5 C 1.50701 * 109.47298 * 182.46778 * 3 2 1 6 6 H 1.07993 * 120.00437 * 240.00222 * 5 3 2 7 7 C 1.37885 * 119.99700 * 60.00090 * 5 3 2 8 8 N 1.31515 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46809 * 90.00267 * 9 7 5 11 11 H 1.48498 * 109.47379 * 210.00002 * 9 7 5 12 12 H 1.48500 * 109.47082 * 330.00664 * 9 7 5 13 13 N 1.46903 * 109.46845 * 62.47401 * 3 2 1 14 14 C 1.48107 * 111.00296 * 63.67899 * 13 3 2 15 15 C 1.51174 * 105.56856 * 92.03252 * 14 13 3 16 16 C 1.39870 * 143.42898 * 197.31883 * 15 14 13 17 17 N 1.30824 * 108.23060 * 179.97438 * 16 15 14 18 18 N 1.40076 * 108.21845 * 0.02562 * 17 16 15 19 19 C 1.46495 * 126.03224 * 180.02562 * 18 17 16 20 20 C 1.34910 * 107.93993 * 0.25735 * 18 17 16 21 21 C 1.48113 * 111.00068 * 178.11363 * 13 3 2 22 22 H 1.09005 * 109.47409 * 174.68492 * 1 2 3 23 23 H 1.09000 * 109.47633 * 294.68796 * 1 2 3 24 24 H 1.08998 * 109.47034 * 54.68604 * 1 2 3 25 25 H 1.09000 * 109.47204 * 239.99959 * 2 1 3 26 26 H 1.08998 * 109.47223 * 120.00043 * 2 1 3 27 27 H 0.96996 * 120.00097 * 179.97438 * 8 7 5 28 28 H 1.08998 * 110.22836 * 333.00782 * 14 13 3 29 29 H 1.09006 * 110.22877 * 211.05585 * 14 13 3 30 30 H 1.07996 * 125.87647 * 0.02562 * 16 15 14 31 31 H 1.09000 * 109.47632 * 90.02250 * 19 18 17 32 32 H 1.08998 * 109.47112 * 210.02628 * 19 18 17 33 33 H 1.08998 * 109.46763 * 330.02171 * 19 18 17 34 34 H 1.09006 * 110.22605 * 26.98393 * 21 13 3 35 35 H 1.08996 * 110.23333 * 148.85223 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9689 -0.8669 5 6 3.5457 1.4429 -0.0612 6 1 4.1183 1.8990 0.7328 7 6 4.1924 0.8610 -1.1309 8 7 3.4950 0.3060 -2.0981 9 14 6.0588 0.8621 -1.2072 10 1 6.5819 -0.3600 -0.5452 11 1 6.4962 0.8822 -2.6261 12 1 6.5819 2.0648 -0.5107 13 7 1.5997 2.1175 1.2283 14 6 2.1951 1.4815 2.4260 15 6 3.4726 2.2430 2.6971 16 6 4.6912 2.1852 3.3811 17 7 5.3511 3.2878 3.1356 18 7 4.5722 4.0845 2.2867 19 6 4.9391 5.4039 1.7663 20 6 3.4223 3.4248 2.0369 21 6 2.1137 3.5054 1.2846 22 1 -0.3634 -1.0233 -0.0952 23 1 -0.3634 0.4292 0.9337 24 1 -0.3633 0.5940 -0.8386 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9499 -0.1030 -2.8508 28 1 2.4165 0.4333 2.2255 29 1 1.5171 1.5685 3.2752 30 1 5.0294 1.3702 4.0037 31 1 5.4667 5.2873 0.8196 32 1 4.0377 5.9961 1.6093 33 1 5.5861 5.9099 2.4828 34 1 2.2778 3.8878 0.2771 35 1 1.4129 4.1455 1.8206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172574.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:00 Heat of formation + Delta-G solvation = 92.006506 kcal Electronic energy + Delta-G solvation = -17574.908300 eV Core-core repulsion = 14996.018363 eV Total energy + Delta-G solvation = -2578.889938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69641 -39.14673 -35.27785 -34.04692 -33.40453 -30.29547 -29.10773 -28.42343 -26.97218 -25.07317 -23.47615 -21.58696 -20.77012 -20.43492 -18.51863 -17.42683 -17.19771 -16.31738 -16.07617 -15.48964 -15.02644 -14.79187 -14.20402 -13.92984 -13.62020 -13.38720 -13.26472 -13.14267 -13.02668 -12.74582 -12.65595 -12.49367 -12.34245 -12.28961 -11.80234 -11.47514 -11.32006 -10.94715 -10.40626 -10.06954 -9.31730 -8.82751 -8.04673 -6.17751 0.98806 1.26362 1.31091 1.38141 1.57898 1.95535 2.37493 3.19154 3.40836 3.51928 3.92983 4.09151 4.34895 4.37020 4.57669 4.60360 4.66980 4.74642 4.79022 4.92038 4.97458 5.04976 5.07899 5.28962 5.40328 5.47239 5.51137 5.71106 5.80095 5.84753 6.03033 6.19234 6.23687 6.30033 6.49093 6.81960 7.02735 7.51868 8.94516 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.013664 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.353737 B = 2048.619871 C = 2933.921695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.207 3.793 4 H 0.013 0.987 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.027 3.973 8 N -0.911 5.911 9 Si 0.927 3.073 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.289 1.289 13 N -0.488 5.488 14 C 0.124 3.876 15 C -0.284 4.284 16 C 0.059 3.941 17 N -0.333 5.333 18 N -0.362 5.362 19 C 0.095 3.905 20 C 0.046 3.954 21 C 0.126 3.874 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.257 0.743 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.199 0.801 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 6.470 7.681 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.100 3.900 4 H 0.031 0.969 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.172 4.172 8 N -0.551 5.551 9 Si 0.756 3.244 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.215 1.215 13 N -0.209 5.209 14 C -0.005 4.005 15 C -0.296 4.296 16 C -0.125 4.125 17 N -0.155 5.155 18 N -0.145 5.145 19 C -0.045 4.045 20 C -0.085 4.085 21 C -0.005 4.005 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.215 0.785 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.928 7.148 7.631 10.633 hybrid contribution 1.793 -0.676 -0.757 2.061 sum -0.135 6.472 6.874 9.443 Atomic orbital electron populations 1.21579 0.95948 0.99724 1.01111 1.21469 0.94682 0.97922 1.00584 1.19365 0.91871 0.91830 0.86977 0.96936 1.22573 0.94024 1.35604 1.06091 0.90656 1.25412 0.99957 0.95784 0.96020 1.69984 1.35537 1.39199 1.10416 0.86052 0.84036 0.77647 0.76670 1.20813 1.20946 1.21523 1.65761 1.50720 1.00928 1.03465 1.20924 0.89021 0.97519 0.92987 1.21684 1.00307 0.99672 1.07986 1.23433 0.92109 0.96719 1.00225 1.77242 1.19023 1.05384 1.13880 1.47976 1.11644 1.16812 1.38029 1.22097 1.03910 0.78820 0.99686 1.22754 0.91811 0.94315 0.99598 1.21325 0.86816 0.93949 0.98412 0.93791 0.92059 0.94577 0.92036 0.94673 0.93319 0.91757 0.88855 0.78464 0.91692 0.87025 0.88088 0.91296 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.71 71.98 0.70 -4.03 16 2 C -0.11 -4.93 5.10 30.59 0.16 -4.77 16 3 C 0.21 9.77 1.68 44.17 0.07 9.84 16 4 H 0.01 0.67 8.12 -2.39 -0.02 0.65 16 5 C -0.54 -28.47 7.11 25.60 0.18 -28.28 16 6 H 0.08 3.98 3.78 -2.91 -0.01 3.97 16 7 C 0.03 1.51 5.30 84.66 0.45 1.96 16 8 N -0.91 -51.63 11.30 21.45 0.24 -51.38 16 9 Si 0.93 45.57 29.54 68.60 2.03 47.59 16 10 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 13 N -0.49 -19.03 5.02 -876.02 -4.40 -23.43 16 14 C 0.12 4.61 6.09 85.47 0.52 5.13 16 15 C -0.28 -10.99 5.14 -19.96 -0.10 -11.10 16 16 C 0.06 2.20 12.02 85.24 1.02 3.22 16 17 N -0.33 -13.02 12.57 -57.03 -0.72 -13.73 16 18 N -0.36 -13.19 4.01 -355.46 -1.43 -14.61 16 19 C 0.10 2.47 11.47 127.77 1.47 3.93 16 20 C 0.05 1.75 5.96 41.59 0.25 2.00 16 21 C 0.13 4.43 6.34 85.47 0.54 4.97 16 22 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 3.23 6.01 -2.39 -0.01 3.21 16 26 H 0.03 1.58 6.10 -2.39 -0.01 1.56 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.06 2.60 5.66 -2.39 -0.01 2.58 16 29 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.20 6.00 8.06 -2.91 -0.02 5.98 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.58 7.75 -2.38 -0.02 2.56 16 35 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -63.66 278.31 2.06 -61.60 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.08 Total: 11.10 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 5.26 Total: -17.13 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -6.30 Total: -103.17 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -63.66 2.06 -61.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172574.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.606 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds