Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46789 * 2 1 4 4 H 1.08998 * 109.47049 * 51.31265 * 3 2 1 5 5 C 1.50696 * 109.47016 * 171.31298 * 3 2 1 6 6 H 1.07998 * 120.00056 * 113.66168 * 5 3 2 7 7 C 1.37881 * 119.99663 * 293.66114 * 5 3 2 8 8 N 1.31514 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47072 * 89.99787 * 9 7 5 11 11 H 1.48501 * 109.47414 * 209.99974 * 9 7 5 12 12 H 1.48500 * 109.47004 * 330.00161 * 9 7 5 13 13 N 1.46894 * 109.46910 * 291.31224 * 3 2 1 14 14 C 1.46980 * 111.00246 * 75.03597 * 13 3 2 15 15 C 1.53385 * 109.72781 * 53.29017 * 14 13 3 16 16 N 1.46639 * 108.23258 * 49.84583 * 15 14 13 17 17 N 1.39381 * 128.42658 * 163.49090 * 16 15 14 18 18 C 1.31119 * 108.07755 * 180.21091 * 17 16 15 19 19 C 1.40132 * 108.26858 * 359.92855 * 18 17 16 20 20 C 1.34542 * 107.79596 * 359.97068 * 19 18 17 21 21 C 1.47370 * 110.99988 * 199.14999 * 13 3 2 22 22 H 1.08992 * 109.47408 * 327.69894 * 1 2 3 23 23 H 1.09001 * 109.46528 * 207.70115 * 1 2 3 24 24 H 1.08997 * 109.47171 * 87.70362 * 1 2 3 25 25 H 1.08998 * 109.47364 * 119.99933 * 2 1 3 26 26 H 1.08998 * 109.47255 * 240.00089 * 2 1 3 27 27 H 0.96995 * 120.00497 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.43196 * 173.37232 * 14 13 3 29 29 H 1.09005 * 109.42383 * 293.21517 * 14 13 3 30 30 H 1.09000 * 109.71480 * 169.53316 * 15 14 13 31 31 H 1.08996 * 109.71065 * 290.12151 * 15 14 13 32 32 H 1.07993 * 125.86500 * 179.97438 * 18 17 16 33 33 H 1.08001 * 126.09554 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.74536 * 45.52817 * 21 13 3 35 35 H 1.09001 * 109.74868 * 166.25372 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5554 1.9992 0.8021 5 6 3.5316 1.4481 0.2146 6 1 4.1894 1.7818 -0.5742 7 6 4.0564 1.0270 1.4181 8 7 3.2554 0.6202 2.3785 9 14 5.9053 1.0345 1.6844 10 1 6.3193 2.3454 2.2460 11 1 6.2735 -0.0483 2.6316 12 1 6.5932 0.8124 0.3871 13 7 1.7286 2.0720 -1.2902 14 6 0.3007 2.4086 -1.3812 15 6 -0.1116 3.2486 -0.1658 16 7 0.8490 4.3470 -0.0201 17 7 0.7181 5.5195 0.7220 18 6 1.8131 6.2238 0.5666 19 6 2.6748 5.5148 -0.2811 20 6 2.0613 4.3679 -0.6251 21 6 2.5699 3.2609 -1.5146 22 1 -0.3634 0.8686 0.5491 23 1 -0.3632 -0.9099 0.4777 24 1 -0.3633 0.0412 -1.0268 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.6246 0.3243 3.2253 28 1 0.1196 2.9772 -2.2933 29 1 -0.2873 1.4910 -1.4040 30 1 -1.1118 3.6531 -0.3207 31 1 -0.1005 2.6286 0.7305 32 1 2.0163 7.1849 1.0153 33 1 3.6562 5.8325 -0.6010 34 1 3.6054 3.0323 -1.2624 35 1 2.5035 3.5674 -2.5585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = 102.953535 kcal Electronic energy + Delta-G solvation = -17703.050896 eV Core-core repulsion = 15124.635657 eV Total energy + Delta-G solvation = -2578.415239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03180 -37.81788 -33.56514 -32.27834 -31.74959 -29.59954 -28.50766 -26.52873 -24.69200 -23.24056 -21.73645 -20.66787 -20.09262 -18.03656 -16.65814 -15.92586 -15.48472 -15.08943 -14.34953 -14.15052 -13.65051 -13.39651 -13.02123 -12.71782 -12.43766 -12.03224 -11.80794 -11.64604 -11.55620 -11.13005 -10.92095 -10.79429 -10.58234 -10.18168 -9.98226 -9.84180 -9.44143 -8.85436 -8.57104 -8.47648 -7.90697 -7.47065 -6.10468 -4.15104 2.52237 3.05171 3.27326 3.34298 3.36159 3.41683 4.35032 4.76085 5.00454 5.22644 5.27203 5.37118 5.51809 5.59607 5.82811 6.05403 6.06992 6.09533 6.14521 6.25811 6.34745 6.39236 6.41717 6.74115 6.80517 6.99105 7.15267 7.24215 7.36625 7.53568 7.63659 7.72230 7.92372 8.14656 8.33156 8.41368 8.89475 9.50263 10.97562 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.012100 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.324386 B = 2313.506108 C = 3075.781859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C 0.207 3.793 4 H 0.018 0.982 5 C -0.517 4.517 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.527 5.527 14 C 0.022 3.978 15 C 0.094 3.906 16 N -0.361 5.361 17 N -0.310 5.310 18 C 0.034 3.966 19 C -0.280 4.280 20 C 0.084 3.916 21 C 0.109 3.891 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 3.990 -6.134 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C 0.102 3.898 4 H 0.036 0.964 5 C -0.555 4.555 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.249 5.249 14 C -0.107 4.107 15 C -0.029 4.029 16 N -0.145 5.145 17 N -0.131 5.131 18 C -0.151 4.151 19 C -0.310 4.310 20 C -0.045 4.045 21 C -0.021 4.021 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.192 0.808 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.974 3.381 -5.750 8.321 hybrid contribution 1.538 0.711 0.771 1.861 sum -3.436 4.093 -4.979 7.304 Atomic orbital electron populations 1.22245 0.99715 1.00110 0.99137 1.21533 0.91416 0.99482 1.02057 1.19501 0.96197 0.90855 0.83261 0.96449 1.21186 0.90961 1.44161 0.99220 0.91465 1.24911 0.98035 0.94954 0.95856 1.69915 1.34547 1.43323 1.04760 0.86568 0.85429 0.77733 0.78193 1.20642 1.21237 1.19674 1.62530 1.01034 1.23673 1.37676 1.23094 0.92993 0.99739 0.94917 1.22590 0.91373 0.86161 1.02762 1.48495 1.13689 1.15503 1.36767 1.77072 1.23852 0.94840 1.17325 1.23774 0.92179 0.99918 0.99237 1.20882 1.02990 0.97435 1.09659 1.22062 0.87044 0.97882 0.97544 1.21427 1.01210 0.84232 0.95226 0.93702 0.94511 0.93557 0.89677 0.93631 0.92867 0.91413 0.86887 0.90129 0.89021 0.80830 0.84139 0.85635 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.35 37.16 0.31 -2.49 16 2 C -0.11 -2.36 5.49 -26.73 -0.15 -2.51 16 3 C 0.21 4.84 1.16 -68.87 -0.08 4.76 16 4 H 0.02 0.47 5.34 -51.93 -0.28 0.20 16 5 C -0.52 -13.36 7.59 -34.44 -0.26 -13.62 16 6 H 0.07 1.70 5.68 -52.49 -0.30 1.40 16 7 C 0.07 1.74 5.28 -17.82 -0.09 1.65 16 8 N -0.89 -24.84 11.80 55.43 0.65 -24.19 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.53 -10.47 4.82 -228.67 -1.10 -11.57 16 14 C 0.02 0.37 5.30 -3.58 -0.02 0.35 16 15 C 0.09 1.69 6.21 -3.77 -0.02 1.67 16 16 N -0.36 -7.40 3.90 -56.86 -0.22 -7.62 16 17 N -0.31 -6.41 12.64 30.73 0.39 -6.02 16 18 C 0.03 0.63 12.04 -17.15 -0.21 0.42 16 19 C -0.28 -5.25 10.77 -40.18 -0.43 -5.68 16 20 C 0.08 1.69 6.22 -82.21 -0.51 1.18 16 21 C 0.11 2.07 5.83 -4.65 -0.03 2.04 16 22 H 0.04 0.81 5.12 -51.93 -0.27 0.54 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.73 6.12 -51.93 -0.32 0.41 16 25 H 0.08 2.15 6.45 -51.93 -0.33 1.82 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.11 1.73 4.19 -51.93 -0.22 1.51 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.82 4.88 -51.93 -0.25 1.57 16 32 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 33 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.13 2.57 5.08 -51.93 -0.26 2.31 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 266.20 15.07 4.01 4.01 Total: -1.00 -29.58 266.20 -7.10 -36.68 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.32 Total: 5.10 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.49 Total: -12.22 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.28 Total: -49.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.58 -7.10 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.638 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds