Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46789 * 2 1 4 4 H 1.08998 * 109.47049 * 51.31265 * 3 2 1 5 5 C 1.50696 * 109.47016 * 171.31298 * 3 2 1 6 6 H 1.07998 * 120.00056 * 113.66168 * 5 3 2 7 7 C 1.37881 * 119.99663 * 293.66114 * 5 3 2 8 8 N 1.31514 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47072 * 89.99787 * 9 7 5 11 11 H 1.48501 * 109.47414 * 209.99974 * 9 7 5 12 12 H 1.48500 * 109.47004 * 330.00161 * 9 7 5 13 13 N 1.46894 * 109.46910 * 291.31224 * 3 2 1 14 14 C 1.46980 * 111.00246 * 75.03597 * 13 3 2 15 15 C 1.53385 * 109.72781 * 53.29017 * 14 13 3 16 16 N 1.46639 * 108.23258 * 49.84583 * 15 14 13 17 17 N 1.39381 * 128.42658 * 163.49090 * 16 15 14 18 18 C 1.31119 * 108.07755 * 180.21091 * 17 16 15 19 19 C 1.40132 * 108.26858 * 359.92855 * 18 17 16 20 20 C 1.34542 * 107.79596 * 359.97068 * 19 18 17 21 21 C 1.47370 * 110.99988 * 199.14999 * 13 3 2 22 22 H 1.08992 * 109.47408 * 327.69894 * 1 2 3 23 23 H 1.09001 * 109.46528 * 207.70115 * 1 2 3 24 24 H 1.08997 * 109.47171 * 87.70362 * 1 2 3 25 25 H 1.08998 * 109.47364 * 119.99933 * 2 1 3 26 26 H 1.08998 * 109.47255 * 240.00089 * 2 1 3 27 27 H 0.96995 * 120.00497 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.43196 * 173.37232 * 14 13 3 29 29 H 1.09005 * 109.42383 * 293.21517 * 14 13 3 30 30 H 1.09000 * 109.71480 * 169.53316 * 15 14 13 31 31 H 1.08996 * 109.71065 * 290.12151 * 15 14 13 32 32 H 1.07993 * 125.86500 * 179.97438 * 18 17 16 33 33 H 1.08001 * 126.09554 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.74536 * 45.52817 * 21 13 3 35 35 H 1.09001 * 109.74868 * 166.25372 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5554 1.9992 0.8021 5 6 3.5316 1.4481 0.2146 6 1 4.1894 1.7818 -0.5742 7 6 4.0564 1.0270 1.4181 8 7 3.2554 0.6202 2.3785 9 14 5.9053 1.0345 1.6844 10 1 6.3193 2.3454 2.2460 11 1 6.2735 -0.0483 2.6316 12 1 6.5932 0.8124 0.3871 13 7 1.7286 2.0720 -1.2902 14 6 0.3007 2.4086 -1.3812 15 6 -0.1116 3.2486 -0.1658 16 7 0.8490 4.3470 -0.0201 17 7 0.7181 5.5195 0.7220 18 6 1.8131 6.2238 0.5666 19 6 2.6748 5.5148 -0.2811 20 6 2.0613 4.3679 -0.6251 21 6 2.5699 3.2609 -1.5146 22 1 -0.3634 0.8686 0.5491 23 1 -0.3632 -0.9099 0.4777 24 1 -0.3633 0.0412 -1.0268 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.6246 0.3243 3.2253 28 1 0.1196 2.9772 -2.2933 29 1 -0.2873 1.4910 -1.4040 30 1 -1.1118 3.6531 -0.3207 31 1 -0.1005 2.6286 0.7305 32 1 2.0163 7.1849 1.0153 33 1 3.6562 5.8325 -0.6010 34 1 3.6054 3.0323 -1.2624 35 1 2.5035 3.5674 -2.5585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = 82.872078 kcal Electronic energy + Delta-G solvation = -17703.921693 eV Core-core repulsion = 15124.635657 eV Total energy + Delta-G solvation = -2579.286036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.50367 -39.38366 -35.33427 -33.78030 -33.52562 -31.10782 -30.08828 -28.20724 -26.31929 -24.87881 -23.27214 -22.17884 -21.69101 -19.68826 -18.36896 -17.49942 -17.16717 -16.64629 -16.10365 -15.76081 -15.07773 -14.93748 -14.49289 -14.27048 -14.11946 -13.53104 -13.42351 -13.22227 -13.09132 -12.81584 -12.70981 -12.48515 -12.20839 -11.86793 -11.66493 -11.51092 -11.10211 -10.66563 -10.47676 -10.04667 -9.38579 -9.09906 -8.13168 -6.21947 1.03175 1.40674 1.42439 1.51059 1.64321 1.98263 2.41773 3.18891 3.26004 3.63273 3.82287 3.98962 4.14884 4.25595 4.41146 4.56812 4.62653 4.69093 4.72014 4.78057 4.88602 4.92250 4.93385 5.19249 5.28318 5.32055 5.47584 5.64721 5.68321 5.82929 5.85858 6.15802 6.19916 6.27631 6.64552 6.85849 6.93980 7.46629 8.94137 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.012100 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.324386 B = 2313.506108 C = 3075.781859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.217 3.783 4 H -0.017 1.017 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.260 1.260 13 N -0.529 5.529 14 C 0.027 3.973 15 C 0.092 3.908 16 N -0.375 5.375 17 N -0.342 5.342 18 C 0.036 3.964 19 C -0.289 4.289 20 C 0.063 3.937 21 C 0.110 3.890 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.258 0.742 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.211 0.789 33 H 0.163 0.837 34 H 0.108 0.892 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 4.688 -7.680 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.001 0.999 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.184 1.184 13 N -0.250 5.250 14 C -0.102 4.102 15 C -0.030 4.030 16 N -0.159 5.159 17 N -0.164 5.164 18 C -0.149 4.149 19 C -0.318 4.318 20 C -0.066 4.066 21 C -0.019 4.019 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.181 0.819 34 H 0.125 0.875 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.082 4.083 -7.320 9.802 hybrid contribution 1.566 0.551 1.228 2.066 sum -3.516 4.634 -6.092 8.423 Atomic orbital electron populations 1.22126 0.96437 1.00511 1.01169 1.21369 0.94427 0.98278 1.00093 1.19203 0.94510 0.91261 0.83957 0.99936 1.21620 0.92711 1.42764 0.99045 0.91171 1.25639 1.01703 0.95158 0.95975 1.70056 1.36003 1.44830 1.05044 0.85680 0.81193 0.77257 0.78325 1.20875 1.21458 1.18442 1.62461 1.03092 1.24330 1.35144 1.23201 0.91054 1.00621 0.95325 1.22677 0.92457 0.85773 1.02087 1.48733 1.14289 1.15856 1.37016 1.77022 1.25378 0.95618 1.18363 1.24431 0.91210 1.00884 0.98417 1.21308 1.03932 0.97165 1.09431 1.22394 0.87382 0.98659 0.98152 1.21447 0.99928 0.83706 0.96807 0.94008 0.93574 0.90527 0.93391 0.93735 0.93346 0.88917 0.85315 0.87644 0.91632 0.77257 0.81926 0.87458 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 8.35 71.98 0.60 -4.46 16 2 C -0.10 -4.58 5.49 30.60 0.17 -4.41 16 3 C 0.22 10.17 1.16 44.17 0.05 10.22 16 4 H -0.02 -0.91 5.34 -2.39 -0.01 -0.92 16 5 C -0.52 -27.18 7.59 25.60 0.19 -26.98 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C 0.01 0.77 5.28 84.66 0.45 1.22 16 8 N -0.92 -52.93 11.80 21.45 0.25 -52.68 16 9 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 13 N -0.53 -20.19 4.82 -877.38 -4.23 -24.42 16 14 C 0.03 0.84 5.30 86.42 0.46 1.30 16 15 C 0.09 3.22 6.21 86.48 0.54 3.76 16 16 N -0.38 -15.03 3.90 -333.80 -1.30 -16.33 16 17 N -0.34 -13.86 12.64 -56.70 -0.72 -14.58 16 18 C 0.04 1.24 12.04 85.26 1.03 2.27 16 19 C -0.29 -10.33 10.77 21.88 0.24 -10.10 16 20 C 0.06 2.47 6.22 41.19 0.26 2.72 16 21 C 0.11 4.02 5.83 85.51 0.50 4.52 16 22 H 0.04 1.48 5.12 -2.39 -0.01 1.46 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.08 2.18 6.12 -2.39 -0.01 2.16 16 25 H 0.05 2.48 6.45 -2.39 -0.02 2.47 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.09 2.46 8.07 -2.39 -0.02 2.44 16 29 H 0.13 3.55 4.19 -2.38 -0.01 3.54 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.05 16 31 H 0.07 2.63 4.88 -2.39 -0.01 2.62 16 32 H 0.21 5.40 8.06 -2.91 -0.02 5.37 16 33 H 0.16 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.11 4.30 5.08 -2.39 -0.01 4.28 16 35 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -64.40 266.20 1.60 -62.80 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.10 Total: 19.97 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.47 Total: -19.95 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -6.00 Total: -108.01 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.40 1.60 -62.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.674 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds