Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46882 * 2 1 4 4 H 1.08995 * 109.46857 * 182.05560 * 3 2 1 5 5 C 1.50697 * 109.47029 * 62.05484 * 3 2 1 6 6 H 1.07998 * 120.00546 * 270.85908 * 5 3 2 7 7 C 1.37885 * 119.99663 * 90.58982 * 5 3 2 8 8 N 1.31516 * 119.99761 * 183.46095 * 7 5 3 9 9 Si 1.86801 * 120.00124 * 3.45780 * 7 5 3 10 10 H 1.48494 * 109.46928 * 85.58053 * 9 7 5 11 11 H 1.48501 * 109.46744 * 205.58104 * 9 7 5 12 12 H 1.48502 * 109.46879 * 325.58102 * 9 7 5 13 13 N 1.46896 * 109.46915 * 302.05660 * 3 2 1 14 14 C 1.46980 * 110.99808 * 172.37320 * 13 3 2 15 15 C 1.53397 * 109.72328 * 53.29464 * 14 13 3 16 16 N 1.46631 * 108.23382 * 49.84408 * 15 14 13 17 17 N 1.39390 * 128.42947 * 163.48957 * 16 15 14 18 18 C 1.31119 * 108.07921 * 180.20915 * 17 16 15 19 19 C 1.40130 * 108.27120 * 359.92676 * 18 17 16 20 20 C 1.34550 * 107.79498 * 359.97438 * 19 18 17 21 21 C 1.47367 * 111.00069 * 296.49085 * 13 3 2 22 22 H 1.08992 * 109.47091 * 61.69635 * 1 2 3 23 23 H 1.09000 * 109.46727 * 181.69988 * 1 2 3 24 24 H 1.09004 * 109.47410 * 301.69289 * 1 2 3 25 25 H 1.08999 * 109.47278 * 240.00241 * 2 1 3 26 26 H 1.09002 * 109.47143 * 119.99860 * 2 1 3 27 27 H 0.97000 * 119.99749 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.42853 * 173.37075 * 14 13 3 29 29 H 1.08993 * 109.43054 * 293.26812 * 14 13 3 30 30 H 1.08997 * 109.70955 * 169.52461 * 15 14 13 31 31 H 1.08993 * 109.71261 * 290.11599 * 15 14 13 32 32 H 1.07990 * 125.86419 * 179.97438 * 18 17 16 33 33 H 1.07994 * 126.10128 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.75004 * 45.53364 * 21 13 3 35 35 H 1.09002 * 109.75070 * 166.25352 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0369 5 6 1.5796 2.1381 1.2551 6 1 0.6293 2.6509 1.2708 7 6 2.3693 2.1149 2.3852 8 7 1.9378 2.6630 3.5002 9 14 4.0518 1.3051 2.3327 10 1 5.0558 2.2814 1.8391 11 1 4.4275 0.8556 3.6972 12 1 4.0093 0.1344 1.4200 13 7 1.5101 2.1492 -1.1738 14 6 1.8288 3.5828 -1.1138 15 6 3.3371 3.7695 -0.9060 16 7 4.0417 2.9462 -1.8938 17 7 5.3742 3.0252 -2.2954 18 6 5.5812 2.1017 -3.2029 19 6 4.3815 1.4059 -3.4031 20 6 3.4545 1.9415 -2.5882 21 6 2.0083 1.5461 -2.4227 22 1 -0.3633 0.4872 -0.9047 23 1 -0.3633 -1.0272 0.0305 24 1 -0.3634 0.5399 0.8744 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4932 2.6464 4.2953 28 1 1.5295 4.0601 -2.0469 29 1 1.2900 4.0396 -0.2838 30 1 3.6005 4.8178 -1.0463 31 1 3.6116 3.4530 0.1002 32 1 6.5159 1.9098 -3.7085 33 1 4.2283 0.5860 -4.0892 34 1 1.9276 0.4606 -2.3653 35 1 1.4267 1.9150 -3.2675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = 88.398279 kcal Electronic energy + Delta-G solvation = -17733.918557 eV Core-core repulsion = 15154.872155 eV Total energy + Delta-G solvation = -2579.046402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23487 -37.84729 -33.79553 -32.50505 -31.46456 -30.23537 -27.94879 -27.25493 -24.34292 -23.68247 -22.10782 -20.78552 -19.95719 -17.93189 -16.66242 -16.44475 -15.45684 -15.28111 -14.44792 -13.98540 -13.78861 -13.60206 -13.19716 -12.93948 -12.54335 -12.48530 -12.02582 -11.90552 -11.51307 -11.12969 -10.86613 -10.73491 -10.44242 -10.36078 -10.17703 -10.04797 -9.77169 -9.06506 -8.78347 -8.69982 -8.17963 -7.64626 -6.22307 -4.21662 2.27946 2.89865 3.14999 3.17320 3.27052 3.32541 4.27708 4.56832 4.91435 5.03226 5.12504 5.40381 5.47627 5.56381 5.74793 5.87970 5.93549 6.03939 6.09878 6.17006 6.24891 6.30855 6.43543 6.46966 6.71149 6.82616 6.94915 7.00947 7.05579 7.33647 7.37177 7.46970 7.72263 7.84520 8.12531 8.47553 8.86459 9.40865 10.89728 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.012048 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.380466 B = 2323.498652 C = 2748.559236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.177 3.823 4 H 0.007 0.993 5 C -0.504 4.504 6 H 0.086 0.914 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.858 3.142 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.518 5.518 14 C 0.062 3.938 15 C 0.093 3.907 16 N -0.356 5.356 17 N -0.302 5.302 18 C 0.030 3.970 19 C -0.280 4.280 20 C 0.058 3.942 21 C 0.104 3.896 22 H 0.052 0.948 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.266 0.734 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.177 0.823 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -1.798 -11.121 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.070 3.930 4 H 0.024 0.976 5 C -0.542 4.542 6 H 0.104 0.896 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.685 3.315 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.239 5.239 14 C -0.068 4.068 15 C -0.029 4.029 16 N -0.139 5.139 17 N -0.124 5.124 18 C -0.155 4.155 19 C -0.310 4.310 20 C -0.072 4.072 21 C -0.026 4.026 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.194 0.806 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.150 -0.745 -10.087 10.180 hybrid contribution 1.829 -1.067 -0.319 2.142 sum 2.979 -1.812 -10.407 10.975 Atomic orbital electron populations 1.21485 0.95601 0.98480 1.02787 1.21707 0.97016 0.97367 0.98691 1.19867 0.92721 0.91529 0.88885 0.97562 1.20812 1.06645 1.33981 0.92779 0.89641 1.24896 0.97336 0.94695 0.95483 1.69860 1.37389 1.44452 1.01087 0.87188 0.85674 0.81063 0.77557 1.20260 1.21159 1.18978 1.62488 1.58032 1.01767 1.01651 1.22398 0.90488 0.90878 1.02999 1.22714 0.94127 0.94554 0.91554 1.48818 1.06855 1.26440 1.31799 1.77166 0.94753 1.23797 1.16688 1.23834 0.99160 0.95109 0.97395 1.20941 0.93155 1.07983 1.08876 1.22165 0.98475 0.91769 0.94810 1.21358 0.85106 1.01402 0.94716 0.92899 0.95778 0.91523 0.95307 0.92877 0.92438 0.91719 0.86566 0.89738 0.88250 0.80634 0.84020 0.88218 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.52 37.16 0.35 -2.01 16 2 C -0.11 -2.24 5.21 -26.73 -0.14 -2.37 16 3 C 0.18 3.84 0.63 -68.86 -0.04 3.80 16 4 H 0.01 0.16 3.63 -51.93 -0.19 -0.03 16 5 C -0.50 -12.63 5.78 -34.44 -0.20 -12.83 16 6 H 0.09 2.34 7.76 -52.49 -0.41 1.93 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 9 Si 0.86 21.26 25.65 -169.99 -4.36 16.90 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.50 6.42 56.52 0.36 -6.14 16 13 N -0.52 -9.66 4.01 -228.67 -0.92 -10.58 16 14 C 0.06 1.09 5.45 -3.57 -0.02 1.07 16 15 C 0.09 1.76 6.54 -3.77 -0.02 1.74 16 16 N -0.36 -6.98 3.81 -56.86 -0.22 -7.20 16 17 N -0.30 -5.97 12.64 30.72 0.39 -5.58 16 18 C 0.03 0.50 12.04 -17.15 -0.21 0.29 16 19 C -0.28 -4.52 10.77 -40.18 -0.43 -4.95 16 20 C 0.06 1.03 5.95 -82.21 -0.49 0.55 16 21 C 0.10 1.69 6.04 -4.66 -0.03 1.66 16 22 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 1.40 7.22 -51.93 -0.38 1.02 16 25 H 0.03 0.53 6.31 -51.93 -0.33 0.20 16 26 H 0.05 1.16 7.28 -51.93 -0.38 0.79 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.12 2.17 6.99 -51.93 -0.36 1.81 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.10 2.21 5.84 -51.93 -0.30 1.90 16 32 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.10 1.55 5.90 -51.93 -0.31 1.25 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 269.56 15.07 4.06 4.06 Total: -1.00 -29.31 269.56 -6.35 -35.66 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.75 Total: 2.50 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.33 Total: -11.03 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.03 Total: -48.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.36 Total: 16.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.31 -6.35 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.059 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds