Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46882 * 2 1 4 4 H 1.08995 * 109.46857 * 182.05560 * 3 2 1 5 5 C 1.50697 * 109.47029 * 62.05484 * 3 2 1 6 6 H 1.07998 * 120.00546 * 270.85908 * 5 3 2 7 7 C 1.37885 * 119.99663 * 90.58982 * 5 3 2 8 8 N 1.31516 * 119.99761 * 183.46095 * 7 5 3 9 9 Si 1.86801 * 120.00124 * 3.45780 * 7 5 3 10 10 H 1.48494 * 109.46928 * 85.58053 * 9 7 5 11 11 H 1.48501 * 109.46744 * 205.58104 * 9 7 5 12 12 H 1.48502 * 109.46879 * 325.58102 * 9 7 5 13 13 N 1.46896 * 109.46915 * 302.05660 * 3 2 1 14 14 C 1.46980 * 110.99808 * 172.37320 * 13 3 2 15 15 C 1.53397 * 109.72328 * 53.29464 * 14 13 3 16 16 N 1.46631 * 108.23382 * 49.84408 * 15 14 13 17 17 N 1.39390 * 128.42947 * 163.48957 * 16 15 14 18 18 C 1.31119 * 108.07921 * 180.20915 * 17 16 15 19 19 C 1.40130 * 108.27120 * 359.92676 * 18 17 16 20 20 C 1.34550 * 107.79498 * 359.97438 * 19 18 17 21 21 C 1.47367 * 111.00069 * 296.49085 * 13 3 2 22 22 H 1.08992 * 109.47091 * 61.69635 * 1 2 3 23 23 H 1.09000 * 109.46727 * 181.69988 * 1 2 3 24 24 H 1.09004 * 109.47410 * 301.69289 * 1 2 3 25 25 H 1.08999 * 109.47278 * 240.00241 * 2 1 3 26 26 H 1.09002 * 109.47143 * 119.99860 * 2 1 3 27 27 H 0.97000 * 119.99749 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.42853 * 173.37075 * 14 13 3 29 29 H 1.08993 * 109.43054 * 293.26812 * 14 13 3 30 30 H 1.08997 * 109.70955 * 169.52461 * 15 14 13 31 31 H 1.08993 * 109.71261 * 290.11599 * 15 14 13 32 32 H 1.07990 * 125.86419 * 179.97438 * 18 17 16 33 33 H 1.07994 * 126.10128 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.75004 * 45.53364 * 21 13 3 35 35 H 1.09002 * 109.75070 * 166.25352 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 -0.0369 5 6 1.5796 2.1381 1.2551 6 1 0.6293 2.6509 1.2708 7 6 2.3693 2.1149 2.3852 8 7 1.9378 2.6630 3.5002 9 14 4.0518 1.3051 2.3327 10 1 5.0558 2.2814 1.8391 11 1 4.4275 0.8556 3.6972 12 1 4.0093 0.1344 1.4200 13 7 1.5101 2.1492 -1.1738 14 6 1.8288 3.5828 -1.1138 15 6 3.3371 3.7695 -0.9060 16 7 4.0417 2.9462 -1.8938 17 7 5.3742 3.0252 -2.2954 18 6 5.5812 2.1017 -3.2029 19 6 4.3815 1.4059 -3.4031 20 6 3.4545 1.9415 -2.5882 21 6 2.0083 1.5461 -2.4227 22 1 -0.3633 0.4872 -0.9047 23 1 -0.3633 -1.0272 0.0305 24 1 -0.3634 0.5399 0.8744 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4932 2.6464 4.2953 28 1 1.5295 4.0601 -2.0469 29 1 1.2900 4.0396 -0.2838 30 1 3.6005 4.8178 -1.0463 31 1 3.6116 3.4530 0.1002 32 1 6.5159 1.9098 -3.7085 33 1 4.2283 0.5860 -4.0892 34 1 1.9276 0.4606 -2.3653 35 1 1.4267 1.9150 -3.2675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = 68.172133 kcal Electronic energy + Delta-G solvation = -17734.795628 eV Core-core repulsion = 15154.872155 eV Total energy + Delta-G solvation = -2579.923473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.58367 -39.35919 -35.44496 -34.27403 -33.03541 -31.64191 -29.32516 -29.00461 -25.77847 -25.41490 -23.58358 -22.11330 -21.51749 -19.59095 -18.49930 -17.83196 -16.95434 -16.90359 -16.08648 -15.56081 -15.21940 -15.10317 -14.75716 -14.49382 -14.29699 -13.96981 -13.42731 -13.31997 -13.15095 -12.81673 -12.62335 -12.40925 -12.06546 -11.95521 -11.78439 -11.64847 -11.52111 -10.86910 -10.77852 -10.17437 -9.48831 -9.19434 -8.33340 -6.31073 0.94951 1.15765 1.24172 1.28498 1.54390 1.91740 2.21994 2.97413 3.19215 3.60488 3.71652 3.98667 4.15221 4.20621 4.35252 4.49912 4.53905 4.61647 4.71263 4.73954 4.82386 4.85320 5.00575 5.07719 5.19352 5.23192 5.34048 5.41904 5.67753 5.79339 5.80083 6.00833 6.05704 6.21624 6.56743 6.77754 6.81648 7.33257 8.82703 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023615 B = 0.012048 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.380466 B = 2323.498652 C = 2748.559236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.112 4.112 3 C 0.183 3.817 4 H -0.012 1.012 5 C -0.477 4.477 6 H 0.057 0.943 7 C 0.035 3.965 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.519 5.519 14 C 0.068 3.932 15 C 0.097 3.903 16 N -0.376 5.376 17 N -0.347 5.347 18 C 0.035 3.965 19 C -0.275 4.275 20 C 0.042 3.958 21 C 0.107 3.893 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.176 0.824 34 H 0.112 0.888 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -3.265 -14.067 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.076 3.924 4 H 0.006 0.994 5 C -0.516 4.516 6 H 0.075 0.925 7 C -0.164 4.164 8 N -0.576 5.576 9 Si 0.733 3.267 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.240 5.240 14 C -0.062 4.062 15 C -0.026 4.026 16 N -0.160 5.160 17 N -0.169 5.169 18 C -0.150 4.150 19 C -0.304 4.304 20 C -0.088 4.088 21 C -0.022 4.022 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.194 0.806 34 H 0.130 0.870 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.238 -2.230 -13.061 13.308 hybrid contribution 1.796 -0.603 0.465 1.951 sum 3.034 -2.834 -12.596 13.262 Atomic orbital electron populations 1.21377 0.94255 0.99788 1.01926 1.21684 0.98166 0.96056 0.99104 1.19658 0.91601 0.92463 0.88695 0.99395 1.20935 1.04720 1.31963 0.93951 0.92488 1.25379 0.99660 0.95769 0.95561 1.69962 1.38625 1.47183 1.01835 0.86433 0.82810 0.80205 0.77261 1.21612 1.21294 1.18146 1.62371 1.57866 1.02025 1.01765 1.22359 0.89432 0.90575 1.03821 1.22531 0.94911 0.95309 0.89860 1.48848 1.07165 1.27452 1.32530 1.77137 0.95255 1.25919 1.18556 1.24551 1.00788 0.93658 0.95996 1.21394 0.92263 1.08165 1.08551 1.22614 0.99464 0.91586 0.95094 1.21555 0.84658 1.01990 0.93984 0.91485 0.93264 0.94712 0.92456 0.94895 0.92687 0.88571 0.88464 0.88509 0.92333 0.77048 0.80631 0.87041 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 9.52 71.98 0.69 -3.40 16 2 C -0.11 -4.33 5.21 30.60 0.16 -4.17 16 3 C 0.18 7.81 0.63 44.17 0.03 7.84 16 4 H -0.01 -0.54 3.63 -2.39 -0.01 -0.55 16 5 C -0.48 -24.41 5.78 25.60 0.15 -24.26 16 6 H 0.06 3.22 7.76 -2.91 -0.02 3.20 16 7 C 0.03 1.92 5.47 84.66 0.46 2.38 16 8 N -0.94 -55.58 13.96 21.45 0.30 -55.28 16 9 Si 0.91 45.04 25.65 68.60 1.76 46.80 16 10 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.26 -12.31 6.42 99.48 0.64 -11.67 16 13 N -0.52 -18.30 4.01 -877.39 -3.52 -21.82 16 14 C 0.07 2.32 5.45 86.42 0.47 2.79 16 15 C 0.10 3.68 6.54 86.49 0.57 4.24 16 16 N -0.38 -14.20 3.81 -333.79 -1.27 -15.47 16 17 N -0.35 -13.17 12.64 -56.71 -0.72 -13.88 16 18 C 0.03 1.04 12.04 85.26 1.03 2.07 16 19 C -0.27 -7.73 10.77 21.88 0.24 -7.50 16 20 C 0.04 1.35 5.95 41.19 0.24 1.59 16 21 C 0.11 3.05 6.04 85.51 0.52 3.57 16 22 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.03 1.42 7.22 -2.39 -0.02 1.41 16 25 H 0.06 1.90 6.31 -2.39 -0.02 1.89 16 26 H 0.03 1.39 7.28 -2.39 -0.02 1.37 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 29 H 0.10 3.69 6.99 -2.39 -0.02 3.67 16 30 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.06 2.68 5.84 -2.39 -0.01 2.67 16 32 H 0.21 4.42 8.06 -2.92 -0.02 4.40 16 33 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.11 2.92 5.90 -2.39 -0.01 2.91 16 35 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -64.78 269.56 2.11 -62.67 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.01 Total: 11.82 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.54 Total: -14.84 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -5.20 Total: -106.46 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.76 Total: 46.80 kcal Total: -64.78 2.11 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.845 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds