Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47317 * 2 1 4 4 N 1.31788 * 119.07967 * 89.99722 * 3 2 1 5 5 C 1.32554 * 121.00590 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38544 * 120.53285 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99943 * 5.00016 * 8 7 6 10 10 C 1.46500 * 120.00262 * 184.99780 * 8 7 6 11 11 H 1.09003 * 109.46627 * 359.97438 * 10 8 7 12 12 C 1.52995 * 109.47002 * 240.00136 * 10 8 7 13 13 C 1.50692 * 109.47036 * 120.00010 * 10 8 7 14 14 H 1.08001 * 120.00159 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00071 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99706 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47324 * 119.99616 * 17 15 13 20 20 H 1.48502 * 109.47120 * 239.99962 * 17 15 13 21 21 N 1.31744 * 119.08431 * 270.00100 * 3 2 1 22 22 H 1.08997 * 109.46958 * 299.99884 * 1 2 3 23 23 H 1.08998 * 109.47057 * 60.00264 * 1 2 3 24 24 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46705 * 239.99673 * 2 1 3 26 26 H 1.09001 * 109.46819 * 120.00204 * 2 1 3 27 27 H 1.08000 * 120.39669 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.83682 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47316 * 89.99806 * 9 8 7 30 30 H 1.08999 * 109.47426 * 209.99897 * 9 8 7 31 31 H 1.09010 * 109.47153 * 329.99878 * 9 8 7 32 32 H 1.09003 * 109.47236 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.47538 * 299.99607 * 12 10 8 34 34 H 1.09007 * 109.47519 * 60.00072 * 12 10 8 35 35 H 0.97004 * 119.99784 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9085 3.9111 -2.4011 9 6 3.4991 5.2514 -2.4310 10 6 2.5527 3.2394 -3.6535 11 1 2.1307 2.2589 -3.4327 12 6 3.8051 3.0724 -4.5163 13 6 1.5372 4.0681 -4.3970 14 1 1.1918 5.0020 -3.9788 15 6 1.0491 3.6342 -5.6113 16 7 1.4702 2.4972 -6.1208 17 14 -0.2091 4.6618 -6.5334 18 1 -0.5143 5.8879 -5.7532 19 1 0.3394 5.0433 -7.8596 20 1 -1.4523 3.8714 -6.7206 21 7 2.2459 2.0246 -1.1513 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.8590 3.7592 2.1457 28 1 3.2833 4.9658 0.0195 29 1 4.5847 5.1691 -2.4828 30 1 3.1335 5.7902 -3.3051 31 1 3.2185 5.7924 -1.5272 32 1 3.5404 2.5722 -5.4480 33 1 4.2276 4.0527 -4.7372 34 1 4.5396 2.4729 -3.9785 35 1 1.1265 2.1917 -6.9750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353251415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 47.969357 kcal Electronic energy + Delta-G solvation = -16744.707375 eV Core-core repulsion = 14163.907843 eV Total energy + Delta-G solvation = -2580.799532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33819 -36.90471 -33.87710 -33.16523 -32.02613 -30.23811 -28.71436 -26.24530 -25.25245 -24.28058 -23.05177 -21.00632 -19.84138 -17.05418 -16.77275 -16.18599 -14.86729 -14.80383 -14.54371 -14.17657 -13.76906 -13.43026 -13.32755 -13.01717 -12.50714 -11.99850 -11.68081 -11.52474 -11.28748 -11.10743 -10.95133 -10.76812 -10.72171 -10.46534 -10.21786 -10.12233 -9.90252 -9.27547 -8.98031 -8.56651 -8.35248 -7.03705 -6.10536 -4.19311 1.63789 2.05893 3.22514 3.30775 3.33602 3.70907 4.34048 4.46700 4.56724 4.89100 5.19858 5.33015 5.52005 5.57423 5.64993 5.66928 5.80192 5.99557 6.07099 6.11775 6.16997 6.31747 6.40070 6.49958 6.66795 6.82238 6.92491 7.04380 7.34688 7.56482 7.72938 7.86463 8.10532 8.21711 8.38364 8.82648 9.00558 9.46683 10.93666 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.007876 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.267484 B = 3554.293731 C = 4097.205340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.357 3.643 4 N -0.584 5.584 5 C 0.169 3.831 6 C -0.320 4.320 7 C 0.446 3.554 8 N -0.569 5.569 9 C 0.094 3.906 10 C 0.262 3.738 11 H 0.072 0.928 12 C -0.147 4.147 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.565 5.565 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.133 0.867 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 0.663 9.541 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C 0.087 3.913 4 N -0.306 5.306 5 C 0.008 3.992 6 C -0.350 4.350 7 C 0.201 3.799 8 N -0.276 5.276 9 C -0.049 4.049 10 C 0.162 3.838 11 H 0.090 0.910 12 C -0.205 4.205 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.524 5.524 17 Si 0.725 3.275 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.289 5.289 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.982 -0.213 9.107 9.323 hybrid contribution -0.295 1.658 -0.639 1.802 sum 1.687 1.445 8.468 8.754 Atomic orbital electron populations 1.21652 0.94002 1.01827 1.02461 1.20254 0.96519 0.88913 1.03396 1.22786 0.89241 0.96279 0.83026 1.68156 1.21175 1.11255 1.29966 1.22613 0.89619 0.89737 0.97268 1.22069 1.16301 1.03177 0.93410 1.18661 0.86471 0.88070 0.86741 1.47257 1.60403 1.15774 1.04125 1.21609 0.96856 0.83826 1.02642 1.19059 0.92540 0.94654 0.77529 0.91031 1.22106 0.96707 0.99032 1.02699 1.21377 1.23738 1.07145 1.04369 0.92348 1.24872 0.96544 0.95130 0.97113 1.69889 1.43161 1.20250 1.19090 0.86458 0.81222 0.80236 0.79587 1.19874 1.20889 1.20864 1.67876 1.21399 1.09425 1.30237 0.92684 0.92009 0.92030 0.89527 0.89894 0.82935 0.84879 0.93831 0.89802 0.92548 0.88764 0.95326 0.97072 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.90 37.16 0.37 -1.63 16 2 C -0.05 -0.80 6.37 -27.88 -0.18 -0.97 16 3 C 0.36 6.79 6.90 -157.24 -1.08 5.71 16 4 N -0.58 -10.50 10.33 -10.81 -0.11 -10.61 16 5 C 0.17 2.71 11.29 -17.29 -0.20 2.52 16 6 C -0.32 -5.53 9.33 -39.11 -0.36 -5.89 16 7 C 0.45 9.38 7.39 -154.78 -1.14 8.24 16 8 N -0.57 -12.33 2.86 -175.24 -0.50 -12.83 16 9 C 0.09 1.65 9.30 59.85 0.56 2.21 16 10 C 0.26 6.60 2.67 -69.09 -0.18 6.41 16 11 H 0.07 2.03 6.85 -51.93 -0.36 1.68 16 12 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 13 C -0.53 -14.13 7.99 -34.44 -0.28 -14.40 16 14 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -24.66 11.32 55.43 0.63 -24.04 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 N -0.56 -12.36 8.90 -9.97 -0.09 -12.44 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.13 1.93 6.16 -52.49 -0.32 1.61 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 31 H 0.06 0.83 6.05 -51.92 -0.31 0.52 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 34 H 0.01 0.24 8.14 -51.92 -0.42 -0.19 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -29.84 290.17 -7.96 -37.79 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.97 Total: 1.20 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.26 Total: 0.67 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.07 Total: -59.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.84 -7.96 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353251415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.763 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds