Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47317 * 2 1 4 4 N 1.31788 * 119.07967 * 89.99722 * 3 2 1 5 5 C 1.32554 * 121.00590 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38544 * 120.53285 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99943 * 5.00016 * 8 7 6 10 10 C 1.46500 * 120.00262 * 184.99780 * 8 7 6 11 11 H 1.09003 * 109.46627 * 359.97438 * 10 8 7 12 12 C 1.52995 * 109.47002 * 240.00136 * 10 8 7 13 13 C 1.50692 * 109.47036 * 120.00010 * 10 8 7 14 14 H 1.08001 * 120.00159 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00071 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99706 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00396 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46900 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47324 * 119.99616 * 17 15 13 20 20 H 1.48502 * 109.47120 * 239.99962 * 17 15 13 21 21 N 1.31744 * 119.08431 * 270.00100 * 3 2 1 22 22 H 1.08997 * 109.46958 * 299.99884 * 1 2 3 23 23 H 1.08998 * 109.47057 * 60.00264 * 1 2 3 24 24 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46705 * 239.99673 * 2 1 3 26 26 H 1.09001 * 109.46819 * 120.00204 * 2 1 3 27 27 H 1.08000 * 120.39669 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.83682 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47316 * 89.99806 * 9 8 7 30 30 H 1.08999 * 109.47426 * 209.99897 * 9 8 7 31 31 H 1.09010 * 109.47153 * 329.99878 * 9 8 7 32 32 H 1.09003 * 109.47236 * 179.97438 * 12 10 8 33 33 H 1.09004 * 109.47538 * 299.99607 * 12 10 8 34 34 H 1.09007 * 109.47519 * 60.00072 * 12 10 8 35 35 H 0.97004 * 119.99784 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9085 3.9111 -2.4011 9 6 3.4991 5.2514 -2.4310 10 6 2.5527 3.2394 -3.6535 11 1 2.1307 2.2589 -3.4327 12 6 3.8051 3.0724 -4.5163 13 6 1.5372 4.0681 -4.3970 14 1 1.1918 5.0020 -3.9788 15 6 1.0491 3.6342 -5.6113 16 7 1.4702 2.4972 -6.1208 17 14 -0.2091 4.6618 -6.5334 18 1 -0.5143 5.8879 -5.7532 19 1 0.3394 5.0433 -7.8596 20 1 -1.4523 3.8714 -6.7206 21 7 2.2459 2.0246 -1.1513 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.8590 3.7592 2.1457 28 1 3.2833 4.9658 0.0195 29 1 4.5847 5.1691 -2.4828 30 1 3.1335 5.7902 -3.3051 31 1 3.2185 5.7924 -1.5272 32 1 3.5404 2.5722 -5.4480 33 1 4.2276 4.0527 -4.7372 34 1 4.5396 2.4729 -3.9785 35 1 1.1265 2.1917 -6.9750 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353251415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 31.027480 kcal Electronic energy + Delta-G solvation = -16745.442030 eV Core-core repulsion = 14163.907843 eV Total energy + Delta-G solvation = -2581.534187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76689 -38.52339 -35.43274 -34.76744 -33.57940 -31.87984 -30.27207 -27.71471 -27.30540 -25.59258 -24.55030 -22.49153 -21.49824 -18.69818 -18.33831 -17.96041 -16.67962 -16.18792 -16.02680 -15.57956 -15.34264 -14.90060 -14.74927 -14.33408 -14.26980 -13.52546 -13.24443 -13.10291 -12.89819 -12.75669 -12.64070 -12.44780 -12.28638 -12.12600 -11.95975 -11.78789 -11.32286 -11.11180 -10.56293 -10.50474 -9.89765 -8.63154 -8.12371 -6.31130 0.26976 0.61738 1.38049 1.40090 1.50641 2.18392 2.42386 3.06093 3.12640 3.25463 3.56480 3.98236 4.29267 4.33165 4.36996 4.44672 4.52566 4.67526 4.74442 4.76769 4.88061 4.94386 4.98197 5.00931 5.08384 5.16169 5.30346 5.39897 5.55041 5.72687 5.84442 6.07309 6.17801 6.50168 6.73688 6.83675 7.38106 7.56215 8.88562 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.007876 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.267484 B = 3554.293731 C = 4097.205340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C 0.341 3.659 4 N -0.586 5.586 5 C 0.172 3.828 6 C -0.314 4.314 7 C 0.416 3.584 8 N -0.586 5.586 9 C 0.094 3.906 10 C 0.272 3.728 11 H 0.029 0.971 12 C -0.132 4.132 13 C -0.539 4.539 14 H 0.054 0.946 15 C 0.019 3.981 16 N -0.913 5.913 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.284 1.284 21 N -0.608 5.608 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.202 0.798 28 H 0.164 0.836 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 1.848 11.226 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C 0.072 3.928 4 N -0.307 5.307 5 C 0.011 3.989 6 C -0.342 4.342 7 C 0.172 3.828 8 N -0.294 5.294 9 C -0.048 4.048 10 C 0.170 3.830 11 H 0.047 0.953 12 C -0.191 4.191 13 C -0.577 4.577 14 H 0.072 0.928 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.210 1.210 21 N -0.333 5.333 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.218 0.782 28 H 0.182 0.818 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.029 0.982 10.830 11.062 hybrid contribution -0.290 1.252 -1.044 1.656 sum 1.739 2.234 9.786 10.187 Atomic orbital electron populations 1.21594 0.93120 1.03334 1.01034 1.20386 0.97186 0.87417 1.04137 1.23373 0.89150 0.97502 0.82764 1.68267 1.21009 1.12278 1.29163 1.23420 0.87684 0.88972 0.98824 1.22368 1.15399 1.04352 0.92115 1.19126 0.87472 0.88484 0.87676 1.47129 1.61857 1.17144 1.03272 1.21757 0.97521 0.82026 1.03529 1.18576 0.92365 0.92914 0.79186 0.95272 1.21897 0.96508 0.99313 1.01369 1.21613 1.24301 1.07092 1.04729 0.92754 1.25652 0.98310 0.96158 0.97998 1.70016 1.44210 1.21576 1.19434 0.85478 0.78686 0.78740 0.78524 1.19330 1.20013 1.20968 1.67859 1.22715 1.10694 1.32035 0.92352 0.95002 0.89086 0.90335 0.87473 0.78152 0.81827 0.92263 0.91132 0.89572 0.91263 0.94184 0.96592 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.90 71.98 0.71 -2.97 16 2 C -0.05 -1.59 6.37 29.85 0.19 -1.40 16 3 C 0.34 12.88 6.90 138.77 0.96 13.84 16 4 N -0.59 -19.87 10.33 -188.11 -1.94 -21.82 16 5 C 0.17 4.96 11.29 84.55 0.95 5.92 16 6 C -0.31 -10.03 9.33 22.58 0.21 -9.82 16 7 C 0.42 17.35 7.39 133.16 0.98 18.34 16 8 N -0.59 -25.36 2.86 -708.33 -2.02 -27.38 16 9 C 0.09 3.14 9.30 127.77 1.19 4.33 16 10 C 0.27 14.04 2.67 44.24 0.12 14.16 16 11 H 0.03 1.75 6.85 -2.39 -0.02 1.73 16 12 C -0.13 -6.48 8.97 71.98 0.65 -5.84 16 13 C -0.54 -29.36 7.99 25.60 0.20 -29.15 16 14 H 0.05 2.93 7.33 -2.91 -0.02 2.91 16 15 C 0.02 1.02 5.30 84.65 0.45 1.47 16 16 N -0.91 -52.15 11.32 21.45 0.24 -51.90 16 17 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 N -0.61 -27.06 8.90 -185.44 -1.65 -28.71 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.16 4.08 6.16 -2.91 -0.02 4.06 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.52 7.02 -2.39 -0.02 2.50 16 31 H 0.09 2.30 6.05 -2.38 -0.01 2.28 16 32 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 33 H 0.04 1.80 7.67 -2.39 -0.02 1.79 16 34 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -66.07 290.17 4.34 -61.73 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.07 Total: 14.03 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 6.61 Total: 8.87 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.37 Total: -129.82 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.07 4.34 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353251415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.756 kcal (2) G-P(sol) polarization free energy of solvation -66.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds