Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46707 * 2 1 4 4 N 1.31797 * 119.08096 * 269.97672 * 3 2 1 5 5 C 1.32547 * 121.00979 * 180.02562 * 4 3 2 6 6 C 1.38125 * 119.19920 * 359.74872 * 5 4 3 7 7 C 1.39628 * 118.32907 * 0.51021 * 6 5 4 8 8 N 1.38538 * 120.52730 * 179.76127 * 7 6 5 9 9 C 1.46501 * 120.00376 * 3.18439 * 8 7 6 10 10 H 1.08998 * 109.46900 * 342.15942 * 9 8 7 11 11 C 1.50704 * 109.47371 * 222.16429 * 9 8 7 12 12 H 1.08001 * 119.99471 * 354.92595 * 11 9 8 13 13 C 1.37869 * 119.99891 * 174.93157 * 11 9 8 14 14 N 1.31516 * 120.00175 * 349.59203 * 13 11 9 15 15 Si 1.86807 * 119.99704 * 169.31876 * 13 11 9 16 16 H 1.48505 * 109.46987 * 89.99974 * 15 13 11 17 17 H 1.48499 * 109.47064 * 209.99551 * 15 13 11 18 18 H 1.48496 * 109.47345 * 329.99856 * 15 13 11 19 19 C 1.53000 * 109.47026 * 102.16110 * 9 8 7 20 20 C 1.52996 * 109.47339 * 295.91689 * 19 9 8 21 21 N 1.31740 * 119.08609 * 90.00056 * 3 2 1 22 22 H 1.09001 * 109.47311 * 60.00163 * 1 2 3 23 23 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47338 * 300.00146 * 1 2 3 25 25 H 1.09004 * 109.46981 * 239.99879 * 2 1 3 26 26 H 1.08996 * 109.46689 * 120.00146 * 2 1 3 27 27 H 1.07992 * 120.40298 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.83356 * 180.25204 * 6 5 4 29 29 H 0.97006 * 120.00047 * 183.18224 * 8 7 6 30 30 H 0.96998 * 119.99649 * 356.61115 * 14 13 11 31 31 H 1.09001 * 109.47439 * 55.92125 * 19 9 8 32 32 H 1.09003 * 109.47109 * 175.92003 * 19 9 8 33 33 H 1.09003 * 109.47364 * 305.37048 * 20 19 9 34 34 H 1.09001 * 109.47353 * 65.36817 * 20 19 9 35 35 H 1.09000 * 109.47531 * 185.36971 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2462 2.0247 -1.1518 5 6 2.6882 3.2735 -1.1964 6 6 2.9212 3.9484 -0.0141 7 6 2.6897 3.2777 1.1885 8 7 2.9131 3.9096 2.4010 9 6 3.3290 5.3140 2.4295 10 1 3.7121 5.5994 1.4498 11 6 4.4094 5.4972 3.4641 12 1 4.6945 4.6713 4.0990 13 6 5.0335 6.7189 3.6002 14 7 4.8384 7.6606 2.7030 15 14 6.1503 7.0394 5.0629 16 1 7.5407 6.6466 4.7196 17 1 6.1145 8.4838 5.4060 18 1 5.6837 6.2427 6.2259 19 6 2.1288 6.1942 2.7840 20 6 1.0737 6.0863 1.6813 21 7 2.2457 2.0246 1.1513 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8597 3.7589 -2.1457 28 1 3.2775 4.9679 -0.0196 29 1 2.7942 3.4220 3.2312 30 1 4.2950 7.4795 1.9202 31 1 1.7011 5.8616 3.7299 32 1 2.4531 7.2307 2.8764 33 1 1.5271 6.3274 0.7198 34 1 0.6805 5.0701 1.6528 35 1 0.2620 6.7844 1.8855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353272942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = 27.843645 kcal Electronic energy + Delta-G solvation = -16588.571767 eV Core-core repulsion = 14006.899519 eV Total energy + Delta-G solvation = -2581.672248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44960 -37.01693 -34.05962 -33.56749 -31.98626 -30.86991 -29.51785 -26.53860 -24.70722 -23.36479 -22.94971 -21.46342 -19.95215 -17.96817 -16.90657 -16.67121 -15.07998 -14.68387 -14.38890 -14.11231 -13.86399 -13.80889 -13.42282 -13.10083 -12.84949 -12.30210 -12.13412 -11.73770 -11.59253 -11.04818 -10.99130 -10.89020 -10.71692 -10.39018 -10.33242 -10.22113 -9.85554 -9.36350 -8.86349 -8.69986 -8.48151 -7.32423 -6.60189 -4.34081 1.54732 1.95527 3.33101 3.36080 3.51755 3.76299 4.33128 4.38661 4.45291 4.84218 5.10749 5.27047 5.36520 5.43012 5.50011 5.71764 5.87035 5.89371 5.90785 5.99891 6.05244 6.09702 6.24673 6.26472 6.51494 6.57967 6.74747 6.77500 7.02141 7.21078 7.38493 7.67179 7.93727 8.27984 8.37690 8.58389 8.83479 9.35278 10.76252 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.006092 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.151353 B = 4594.720225 C = 4735.346068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.353 3.647 4 N -0.580 5.580 5 C 0.166 3.834 6 C -0.298 4.298 7 C 0.448 3.552 8 N -0.677 5.677 9 C 0.259 3.741 10 H 0.044 0.956 11 C -0.617 4.617 12 H 0.057 0.943 13 C 0.031 3.969 14 N -0.899 5.899 15 Si 1.070 2.930 16 H -0.287 1.287 17 H -0.281 1.281 18 H -0.287 1.287 19 C -0.133 4.133 20 C -0.147 4.147 21 N -0.592 5.592 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.399 0.601 30 H 0.271 0.729 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -8.103 -4.177 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.083 3.917 4 N -0.301 5.301 5 C 0.006 3.994 6 C -0.327 4.327 7 C 0.201 3.799 8 N -0.302 5.302 9 C 0.156 3.844 10 H 0.062 0.938 11 C -0.655 4.655 12 H 0.076 0.924 13 C -0.175 4.175 14 N -0.534 5.534 15 Si 0.898 3.102 16 H -0.214 1.214 17 H -0.207 1.207 18 H -0.213 1.213 19 C -0.173 4.173 20 C -0.204 4.204 21 N -0.318 5.318 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.233 0.767 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.326 -7.550 -3.426 9.854 hybrid contribution -0.606 -0.314 -0.365 0.774 sum -5.933 -7.864 -3.791 10.555 Atomic orbital electron populations 1.21652 0.94102 1.01801 1.02317 1.20243 0.96368 0.88973 1.03443 1.22671 0.89740 0.96134 0.83159 1.68153 1.20976 1.11258 1.29726 1.22698 0.89606 0.89505 0.97611 1.22262 1.13310 1.04110 0.93028 1.18727 0.85807 0.87606 0.87771 1.45171 1.68125 1.13332 1.03597 1.19080 0.91922 0.74827 0.98563 0.93837 1.22073 1.21721 1.00367 1.21322 0.92439 1.25783 0.97878 0.92101 1.01712 1.70804 1.37259 1.35532 1.09788 0.83530 0.75632 0.76306 0.74780 1.21361 1.20688 1.21301 1.22049 0.95927 1.02218 0.97059 1.21825 0.98994 1.00006 0.99623 1.67765 1.22938 1.10068 1.31059 0.92473 0.91989 0.92472 0.89690 0.89791 0.82636 0.84049 0.76672 0.91765 0.93144 0.90490 0.93469 0.94125 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.67 6.37 -27.88 -0.18 -0.85 16 3 C 0.35 6.15 6.90 -157.24 -1.08 5.06 16 4 N -0.58 -10.16 10.33 -10.81 -0.11 -10.27 16 5 C 0.17 2.78 11.29 -17.28 -0.20 2.59 16 6 C -0.30 -5.61 8.67 -39.10 -0.34 -5.95 16 7 C 0.45 9.02 6.84 -154.78 -1.06 7.96 16 8 N -0.68 -14.15 4.73 -54.91 -0.26 -14.41 16 9 C 0.26 5.93 1.80 -69.08 -0.12 5.81 16 10 H 0.04 1.06 4.82 -51.93 -0.25 0.81 16 11 C -0.62 -15.91 8.72 -34.44 -0.30 -16.21 16 12 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 13 C 0.03 0.82 5.15 -17.82 -0.09 0.73 16 14 N -0.90 -24.76 12.87 55.43 0.71 -24.04 16 15 Si 1.07 23.61 29.92 -169.99 -5.09 18.53 16 16 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 19 C -0.13 -2.86 5.35 -26.73 -0.14 -3.00 16 20 C -0.15 -2.74 8.98 37.16 0.33 -2.40 16 21 N -0.59 -11.42 10.37 -9.97 -0.10 -11.52 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.14 2.69 5.73 -52.49 -0.30 2.39 16 29 H 0.40 8.12 8.89 -40.82 -0.36 7.76 16 30 H 0.27 7.36 6.36 -40.82 -0.26 7.10 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.80 6.52 -51.93 -0.34 1.47 16 33 H 0.05 0.86 7.74 -51.93 -0.40 0.45 16 34 H 0.04 0.76 7.33 -51.93 -0.38 0.38 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -28.09 289.79 -8.18 -36.26 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.88 Total: 8.60 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.81 Total: -7.51 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.24 Total: -60.25 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.09 Total: 18.53 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.09 -8.18 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353272942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.108 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds