Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46707 * 2 1 4 4 N 1.31797 * 119.08096 * 269.97672 * 3 2 1 5 5 C 1.32547 * 121.00979 * 180.02562 * 4 3 2 6 6 C 1.38125 * 119.19920 * 359.74872 * 5 4 3 7 7 C 1.39628 * 118.32907 * 0.51021 * 6 5 4 8 8 N 1.38538 * 120.52730 * 179.76127 * 7 6 5 9 9 C 1.46501 * 120.00376 * 3.18439 * 8 7 6 10 10 H 1.08998 * 109.46900 * 342.15942 * 9 8 7 11 11 C 1.50704 * 109.47371 * 222.16429 * 9 8 7 12 12 H 1.08001 * 119.99471 * 354.92595 * 11 9 8 13 13 C 1.37869 * 119.99891 * 174.93157 * 11 9 8 14 14 N 1.31516 * 120.00175 * 349.59203 * 13 11 9 15 15 Si 1.86807 * 119.99704 * 169.31876 * 13 11 9 16 16 H 1.48505 * 109.46987 * 89.99974 * 15 13 11 17 17 H 1.48499 * 109.47064 * 209.99551 * 15 13 11 18 18 H 1.48496 * 109.47345 * 329.99856 * 15 13 11 19 19 C 1.53000 * 109.47026 * 102.16110 * 9 8 7 20 20 C 1.52996 * 109.47339 * 295.91689 * 19 9 8 21 21 N 1.31740 * 119.08609 * 90.00056 * 3 2 1 22 22 H 1.09001 * 109.47311 * 60.00163 * 1 2 3 23 23 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47338 * 300.00146 * 1 2 3 25 25 H 1.09004 * 109.46981 * 239.99879 * 2 1 3 26 26 H 1.08996 * 109.46689 * 120.00146 * 2 1 3 27 27 H 1.07992 * 120.40298 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.83356 * 180.25204 * 6 5 4 29 29 H 0.97006 * 120.00047 * 183.18224 * 8 7 6 30 30 H 0.96998 * 119.99649 * 356.61115 * 14 13 11 31 31 H 1.09001 * 109.47439 * 55.92125 * 19 9 8 32 32 H 1.09003 * 109.47109 * 175.92003 * 19 9 8 33 33 H 1.09003 * 109.47364 * 305.37048 * 20 19 9 34 34 H 1.09001 * 109.47353 * 65.36817 * 20 19 9 35 35 H 1.09000 * 109.47531 * 185.36971 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2462 2.0247 -1.1518 5 6 2.6882 3.2735 -1.1964 6 6 2.9212 3.9484 -0.0141 7 6 2.6897 3.2777 1.1885 8 7 2.9131 3.9096 2.4010 9 6 3.3290 5.3140 2.4295 10 1 3.7121 5.5994 1.4498 11 6 4.4094 5.4972 3.4641 12 1 4.6945 4.6713 4.0990 13 6 5.0335 6.7189 3.6002 14 7 4.8384 7.6606 2.7030 15 14 6.1503 7.0394 5.0629 16 1 7.5407 6.6466 4.7196 17 1 6.1145 8.4838 5.4060 18 1 5.6837 6.2427 6.2259 19 6 2.1288 6.1942 2.7840 20 6 1.0737 6.0863 1.6813 21 7 2.2457 2.0246 1.1513 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8597 3.7589 -2.1457 28 1 3.2775 4.9679 -0.0196 29 1 2.7942 3.4220 3.2312 30 1 4.2950 7.4795 1.9202 31 1 1.7011 5.8616 3.7299 32 1 2.4531 7.2307 2.8764 33 1 1.5271 6.3274 0.7198 34 1 0.6805 5.0701 1.6528 35 1 0.2620 6.7844 1.8855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353272942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = 11.801745 kcal Electronic energy + Delta-G solvation = -16589.267396 eV Core-core repulsion = 14006.899519 eV Total energy + Delta-G solvation = -2582.367877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87966 -38.68193 -35.58394 -34.92224 -33.72081 -32.37191 -30.91254 -28.34330 -25.96596 -25.16177 -24.37434 -22.87309 -21.56834 -19.68178 -18.54802 -18.19306 -16.53045 -16.11663 -15.99173 -15.69237 -15.48360 -15.01110 -14.88639 -14.50274 -14.38654 -14.01935 -13.58378 -13.24327 -12.69586 -12.62099 -12.57134 -12.45181 -12.06375 -11.95024 -11.92075 -11.88696 -11.40868 -10.95008 -10.59452 -10.46074 -10.14174 -8.94263 -8.65634 -6.41721 0.15400 0.48669 1.54713 1.60692 1.79293 2.19455 2.55018 2.94751 3.10481 3.19790 3.51844 3.88644 4.13799 4.28223 4.31106 4.33865 4.39339 4.43483 4.46915 4.67625 4.76365 4.88930 5.01145 5.01680 5.08030 5.13774 5.18012 5.30410 5.45617 5.51336 5.76914 5.82161 6.12497 6.42981 6.58447 6.76155 7.32048 7.40973 8.69432 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.006092 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.151353 B = 4594.720225 C = 4735.346068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C 0.344 3.656 4 N -0.582 5.582 5 C 0.175 3.825 6 C -0.315 4.315 7 C 0.432 3.568 8 N -0.683 5.683 9 C 0.267 3.733 10 H 0.029 0.971 11 C -0.629 4.629 12 H 0.048 0.952 13 C -0.011 4.011 14 N -0.921 5.921 15 Si 1.112 2.888 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.274 1.274 19 C -0.124 4.124 20 C -0.133 4.133 21 N -0.605 5.605 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.042 0.958 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.193 0.807 28 H 0.134 0.866 29 H 0.398 0.602 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -9.231 -4.753 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C 0.075 3.925 4 N -0.303 5.303 5 C 0.015 3.985 6 C -0.344 4.344 7 C 0.187 3.813 8 N -0.310 5.310 9 C 0.163 3.837 10 H 0.047 0.953 11 C -0.667 4.667 12 H 0.066 0.934 13 C -0.212 4.212 14 N -0.556 5.556 15 Si 0.934 3.066 16 H -0.205 1.205 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.164 4.164 20 C -0.191 4.191 21 N -0.331 5.331 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.061 0.939 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.210 0.790 28 H 0.152 0.848 29 H 0.233 0.767 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.875 -8.716 -4.023 11.255 hybrid contribution -0.470 -0.062 -0.274 0.547 sum -6.345 -8.778 -4.297 11.652 Atomic orbital electron populations 1.21616 0.92679 1.03532 1.01337 1.20439 0.97429 0.86492 1.04641 1.23562 0.88683 0.97635 0.82620 1.68302 1.20889 1.11431 1.29645 1.23282 0.87673 0.89170 0.98385 1.22307 1.14520 1.04081 0.93456 1.18916 0.86382 0.88281 0.87719 1.44923 1.69280 1.12650 1.04104 1.18815 0.91812 0.76219 0.96855 0.95346 1.22382 1.22508 1.00128 1.21690 0.93354 1.26972 0.98855 0.92126 1.03217 1.70894 1.38294 1.36149 1.10278 0.82980 0.74564 0.76335 0.72679 1.20478 1.20601 1.19920 1.21875 0.96166 1.00345 0.98002 1.21675 0.98552 1.00335 0.98500 1.67824 1.23377 1.09757 1.32161 0.92943 0.88938 0.93887 0.87941 0.89101 0.78988 0.84789 0.76731 0.92627 0.93431 0.92707 0.93320 0.94405 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.89 71.98 0.71 -2.03 16 2 C -0.05 -1.22 6.37 29.85 0.19 -1.03 16 3 C 0.34 11.44 6.90 138.77 0.96 12.39 16 4 N -0.58 -19.20 10.33 -188.11 -1.94 -21.14 16 5 C 0.18 5.58 11.29 84.56 0.95 6.53 16 6 C -0.32 -11.72 8.67 22.58 0.20 -11.52 16 7 C 0.43 17.38 6.84 133.16 0.91 18.30 16 8 N -0.68 -28.95 4.73 -327.62 -1.55 -30.50 16 9 C 0.27 12.45 1.80 44.25 0.08 12.53 16 10 H 0.03 1.43 4.82 -2.39 -0.01 1.42 16 11 C -0.63 -32.94 8.72 25.60 0.22 -32.71 16 12 H 0.05 2.56 7.84 -2.91 -0.02 2.54 16 13 C -0.01 -0.56 5.15 84.65 0.44 -0.12 16 14 N -0.92 -51.40 12.87 21.44 0.28 -51.12 16 15 Si 1.11 47.49 29.92 68.60 2.05 49.55 16 16 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 C -0.12 -5.40 5.35 30.59 0.16 -5.24 16 20 C -0.13 -4.89 8.98 71.98 0.65 -4.24 16 21 N -0.60 -22.92 10.37 -185.44 -1.92 -24.84 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.13 5.15 5.73 -2.91 -0.02 5.14 16 29 H 0.40 16.52 8.89 -92.70 -0.82 15.69 16 30 H 0.26 14.67 6.36 -92.71 -0.59 14.08 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 2.62 6.52 -2.39 -0.02 2.60 16 33 H 0.05 1.75 7.74 -2.39 -0.02 1.73 16 34 H 0.04 1.39 7.33 -2.39 -0.02 1.38 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -59.68 289.79 2.83 -56.86 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.44 Total: 28.35 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.47 Total: -7.15 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.14 Total: -127.60 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.05 Total: 49.55 kcal Total: -59.68 2.83 -56.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353272942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.657 kcal (2) G-P(sol) polarization free energy of solvation -59.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds