Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.27489 * 2 1 4 4 C 1.54481 * 110.26425 * 121.99213 * 2 1 3 5 5 C 1.54540 * 101.73078 * 144.90609 * 4 2 1 6 6 H 1.08997 * 110.47421 * 216.04522 * 5 4 2 7 7 N 1.46901 * 110.58715 * 93.48235 * 5 4 2 8 8 C 1.46893 * 110.99645 * 158.65220 * 7 5 4 9 9 C 1.53008 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47218 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99927 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99790 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99999 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47369 * 89.99683 * 14 12 10 16 16 H 1.48498 * 109.47491 * 210.00164 * 14 12 10 17 17 H 1.48509 * 109.47015 * 329.99593 * 14 12 10 18 18 C 1.51564 * 104.24733 * 334.73269 * 5 4 2 19 19 N 1.30912 * 141.44717 * 196.63758 * 18 5 4 20 20 C 1.34008 * 109.30033 * 179.74830 * 19 18 5 21 21 C 1.34558 * 108.03449 * 0.05878 * 20 19 18 22 22 N 1.34812 * 109.94272 * 16.51862 * 18 5 4 23 23 H 1.08997 * 109.47190 * 180.49321 * 1 2 3 24 24 H 1.08995 * 109.47085 * 300.49388 * 1 2 3 25 25 H 1.08994 * 109.47267 * 60.49625 * 1 2 3 26 26 H 1.09001 * 111.08544 * 26.75832 * 4 2 1 27 27 H 1.08995 * 110.89187 * 262.96971 * 4 2 1 28 28 H 1.00899 * 110.99649 * 282.61006 * 7 5 4 29 29 H 1.09004 * 109.47823 * 300.00001 * 8 7 5 30 30 H 1.08997 * 109.47213 * 60.00161 * 8 7 5 31 31 H 1.09000 * 109.47158 * 300.00272 * 9 8 7 32 32 H 1.09006 * 109.46814 * 60.00344 * 9 8 7 33 33 H 0.97008 * 119.99769 * 180.02562 * 13 12 10 34 34 H 1.08002 * 125.97901 * 180.02562 * 20 19 18 35 35 H 1.08002 * 126.58444 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0651 -0.7678 1.2291 5 6 3.3353 -1.4346 0.6545 6 1 3.4758 -2.4245 1.0884 7 7 4.5155 -0.5950 0.9000 8 6 5.7493 -1.3896 0.8359 9 6 6.9540 -0.4828 1.0954 10 6 8.2198 -1.2979 1.0289 11 1 8.1701 -2.3567 0.8219 12 6 9.4414 -0.6919 1.2325 13 7 9.5019 0.5974 1.4851 14 14 11.0105 -1.7020 1.1495 15 1 11.5238 -1.7056 -0.2440 16 1 12.0301 -1.1079 2.0510 17 1 10.7251 -3.0957 1.5755 18 6 3.0605 -1.5415 -0.8322 19 7 3.4782 -2.1582 -1.9087 20 6 2.7417 -1.7664 -2.9575 21 6 1.8348 -0.8740 -2.5196 22 7 2.0385 -0.7300 -1.1704 23 1 -0.3633 -1.0276 0.0088 24 1 -0.3633 0.5215 0.8855 25 1 -0.3633 0.5061 -0.8943 26 1 1.3490 -1.5177 1.5653 27 1 2.3166 -0.0810 2.0372 28 1 4.5496 0.1788 0.2533 29 1 5.7156 -2.1747 1.5913 30 1 5.8403 -1.8401 -0.1525 31 1 6.9876 0.3020 0.3396 32 1 6.8632 -0.0320 2.0836 33 1 10.3615 1.0238 1.6279 34 1 2.8563 -2.1070 -3.9760 35 1 1.0898 -0.3680 -3.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462093279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = 64.982415 kcal Electronic energy + Delta-G solvation = -16357.446008 eV Core-core repulsion = 13777.384218 eV Total energy + Delta-G solvation = -2580.061790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.39987 -37.38537 -35.22985 -32.96056 -31.01003 -30.42748 -28.59910 -27.53087 -24.49621 -23.51174 -21.80559 -20.66328 -20.28695 -19.78483 -17.09918 -16.22286 -15.74183 -14.96562 -14.52960 -14.43856 -14.12000 -13.93216 -13.85071 -13.00867 -12.84863 -12.70288 -12.26986 -12.15250 -12.02350 -11.45716 -11.07424 -11.02000 -10.87872 -10.47215 -10.03768 -9.72365 -9.49274 -9.34451 -9.12131 -8.47681 -8.29268 -7.91636 -5.95050 -3.96826 2.13021 2.75282 3.28694 3.37198 3.42761 3.46961 3.90895 4.36308 4.44898 4.46032 4.55900 4.81974 4.86654 5.19975 5.24660 5.26046 5.41346 5.49864 5.57074 5.67596 5.75115 5.79414 5.89646 6.34325 6.41245 6.55913 6.95049 7.03025 7.13599 7.35243 7.69068 7.78677 7.92487 8.09818 8.29413 8.48455 9.10076 9.66758 11.16570 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.005179 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.804942 B = 5405.416101 C = 5806.853261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.097 0.903 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.104 0.896 7 N -0.666 5.666 8 C 0.062 3.938 9 C 0.027 3.973 10 C -0.518 4.518 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.162 3.838 19 N -0.474 5.474 20 C -0.026 4.026 21 C -0.044 4.044 22 N -0.474 5.474 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.338 0.662 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.171 0.829 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.711 -0.427 -3.093 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.115 0.885 4 C -0.155 4.155 5 C 0.048 3.952 6 H 0.122 0.878 7 N -0.296 5.296 8 C -0.066 4.066 9 C -0.011 4.011 10 C -0.557 4.557 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.103 4.103 19 N -0.193 5.193 20 C -0.175 4.175 21 C -0.176 4.176 22 N -0.159 5.159 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.163 -0.730 -2.382 19.325 hybrid contribution 0.287 0.055 -1.361 1.392 sum -18.877 -0.676 -3.743 19.256 Atomic orbital electron populations 1.22068 0.93172 1.03151 1.03115 1.22160 0.95527 0.96705 0.83143 0.88492 1.22917 0.95808 1.00356 0.96454 1.20815 0.92200 0.99013 0.83166 0.87752 1.60983 1.02166 1.10994 1.55416 1.22281 0.88293 0.96702 0.99346 1.19060 0.90113 0.94420 0.97485 1.21173 0.91180 0.95174 1.48159 0.92622 1.24992 0.99149 0.94920 0.95303 1.69979 1.25104 1.09572 1.48842 0.86578 0.83079 0.80393 0.77864 1.20705 1.21255 1.19816 1.25607 0.91307 0.94744 0.98618 1.69952 1.27000 1.25209 0.97137 1.22335 0.96095 1.00430 0.98595 1.22276 1.06120 1.06682 0.82530 1.46672 1.28346 1.33848 1.07013 0.91663 0.90183 0.92074 0.89388 0.86917 0.84406 0.92014 0.95138 0.96978 0.95709 0.93069 0.81221 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.46 37.16 0.35 -0.79 16 2 C 0.13 1.26 4.13 -66.87 -0.28 0.99 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.12 -1.19 6.39 -25.15 -0.16 -1.35 16 5 C 0.16 2.37 3.23 -67.63 -0.22 2.15 16 6 H 0.10 1.55 7.87 -51.93 -0.41 1.14 16 7 N -0.67 -11.79 6.30 -106.64 -0.67 -12.46 16 8 C 0.06 1.34 5.46 -3.82 -0.02 1.32 16 9 C 0.03 0.71 5.23 -27.88 -0.15 0.57 16 10 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.16 2.65 7.86 -154.86 -1.22 1.44 16 19 N -0.47 -8.75 11.26 -10.56 -0.12 -8.87 16 20 C -0.03 -0.38 11.86 -17.90 -0.21 -0.59 16 21 C -0.04 -0.56 12.00 -16.45 -0.20 -0.76 16 22 N -0.47 -6.31 3.27 -105.21 -0.34 -6.66 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.74 7.92 -51.93 -0.41 0.33 16 27 H 0.11 1.07 8.09 -51.93 -0.42 0.65 16 28 H 0.34 6.14 8.49 -39.29 -0.33 5.80 16 29 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -33.52 294.71 -8.82 -42.34 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.34 Total: 1.58 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.51 Total: -10.86 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.40 Total: -54.69 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.52 -8.82 -42.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462093279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.322 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds