Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.27489 * 2 1 4 4 C 1.54481 * 110.26425 * 121.99213 * 2 1 3 5 5 C 1.54540 * 101.73078 * 144.90609 * 4 2 1 6 6 H 1.08997 * 110.47421 * 216.04522 * 5 4 2 7 7 N 1.46901 * 110.58715 * 93.48235 * 5 4 2 8 8 C 1.46893 * 110.99645 * 158.65220 * 7 5 4 9 9 C 1.53008 * 109.47070 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47218 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99927 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99790 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99999 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00106 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47369 * 89.99683 * 14 12 10 16 16 H 1.48498 * 109.47491 * 210.00164 * 14 12 10 17 17 H 1.48509 * 109.47015 * 329.99593 * 14 12 10 18 18 C 1.51564 * 104.24733 * 334.73269 * 5 4 2 19 19 N 1.30912 * 141.44717 * 196.63758 * 18 5 4 20 20 C 1.34008 * 109.30033 * 179.74830 * 19 18 5 21 21 C 1.34558 * 108.03449 * 0.05878 * 20 19 18 22 22 N 1.34812 * 109.94272 * 16.51862 * 18 5 4 23 23 H 1.08997 * 109.47190 * 180.49321 * 1 2 3 24 24 H 1.08995 * 109.47085 * 300.49388 * 1 2 3 25 25 H 1.08994 * 109.47267 * 60.49625 * 1 2 3 26 26 H 1.09001 * 111.08544 * 26.75832 * 4 2 1 27 27 H 1.08995 * 110.89187 * 262.96971 * 4 2 1 28 28 H 1.00899 * 110.99649 * 282.61006 * 7 5 4 29 29 H 1.09004 * 109.47823 * 300.00001 * 8 7 5 30 30 H 1.08997 * 109.47213 * 60.00161 * 8 7 5 31 31 H 1.09000 * 109.47158 * 300.00272 * 9 8 7 32 32 H 1.09006 * 109.46814 * 60.00344 * 9 8 7 33 33 H 0.97008 * 119.99769 * 180.02562 * 13 12 10 34 34 H 1.08002 * 125.97901 * 180.02562 * 20 19 18 35 35 H 1.08002 * 126.58444 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0651 -0.7678 1.2291 5 6 3.3353 -1.4346 0.6545 6 1 3.4758 -2.4245 1.0884 7 7 4.5155 -0.5950 0.9000 8 6 5.7493 -1.3896 0.8359 9 6 6.9540 -0.4828 1.0954 10 6 8.2198 -1.2979 1.0289 11 1 8.1701 -2.3567 0.8219 12 6 9.4414 -0.6919 1.2325 13 7 9.5019 0.5974 1.4851 14 14 11.0105 -1.7020 1.1495 15 1 11.5238 -1.7056 -0.2440 16 1 12.0301 -1.1079 2.0510 17 1 10.7251 -3.0957 1.5755 18 6 3.0605 -1.5415 -0.8322 19 7 3.4782 -2.1582 -1.9087 20 6 2.7417 -1.7664 -2.9575 21 6 1.8348 -0.8740 -2.5196 22 7 2.0385 -0.7300 -1.1704 23 1 -0.3633 -1.0276 0.0088 24 1 -0.3633 0.5215 0.8855 25 1 -0.3633 0.5061 -0.8943 26 1 1.3490 -1.5177 1.5653 27 1 2.3166 -0.0810 2.0372 28 1 4.5496 0.1788 0.2533 29 1 5.7156 -2.1747 1.5913 30 1 5.8403 -1.8401 -0.1525 31 1 6.9876 0.3020 0.3396 32 1 6.8632 -0.0320 2.0836 33 1 10.3615 1.0238 1.6279 34 1 2.8563 -2.1070 -3.9760 35 1 1.0898 -0.3680 -3.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462093279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = 42.257360 kcal Electronic energy + Delta-G solvation = -16358.431440 eV Core-core repulsion = 13777.384218 eV Total energy + Delta-G solvation = -2581.047222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.46582 -38.54158 -36.65856 -34.95378 -32.54438 -31.39014 -30.11445 -28.71262 -26.13260 -24.82994 -22.84660 -22.53038 -21.37114 -20.90344 -18.59954 -17.94644 -16.92600 -16.51801 -16.19922 -15.64072 -15.31283 -15.11442 -14.90053 -14.62953 -14.25713 -13.69537 -13.64740 -13.17089 -13.10823 -12.90244 -12.84659 -12.53515 -12.26220 -12.09012 -11.92239 -11.40846 -11.23869 -10.89729 -10.58199 -10.56281 -9.78797 -9.23724 -8.21096 -6.32120 1.05935 1.39850 1.41663 1.53019 1.83530 2.11704 2.40767 2.90165 3.12355 3.19169 3.53341 3.66455 3.89884 4.10128 4.21779 4.35553 4.52898 4.56490 4.62943 4.67869 4.71671 4.76694 4.96056 5.03218 5.05692 5.16649 5.37990 5.42153 5.64263 5.73302 5.87411 6.01458 6.13341 6.16881 6.33724 6.83527 7.17968 7.36830 8.91117 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.005179 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.804942 B = 5405.416101 C = 5806.853261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.121 3.879 3 H 0.102 0.898 4 C -0.103 4.103 5 C 0.156 3.844 6 H 0.098 0.902 7 N -0.659 5.659 8 C 0.084 3.916 9 C 0.036 3.964 10 C -0.545 4.545 11 H 0.056 0.944 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.274 1.274 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.131 3.869 19 N -0.527 5.527 20 C -0.057 4.057 21 C -0.025 4.025 22 N -0.468 5.468 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.009 0.991 31 H -0.015 1.015 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.187 0.813 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 -0.411 -2.965 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.120 0.880 4 C -0.141 4.141 5 C 0.043 3.957 6 H 0.116 0.884 7 N -0.288 5.288 8 C -0.045 4.045 9 C -0.002 4.002 10 C -0.584 4.584 11 H 0.074 0.926 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.200 1.200 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.134 4.134 19 N -0.247 5.247 20 C -0.205 4.205 21 C -0.159 4.159 22 N -0.151 5.151 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.003 0.997 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.204 0.796 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -20.749 -0.710 -2.237 20.881 hybrid contribution 0.710 0.083 -1.446 1.613 sum -20.039 -0.627 -3.683 20.384 Atomic orbital electron populations 1.22038 0.90438 1.03460 1.04656 1.22458 0.97608 0.96331 0.81565 0.87990 1.22945 0.93608 1.00844 0.96712 1.21002 0.92632 0.98807 0.83224 0.88369 1.60916 1.01635 1.10784 1.55433 1.21819 0.88669 0.95885 0.98090 1.18885 0.91897 0.94170 0.95214 1.21582 0.92618 0.95557 1.48631 0.92554 1.25940 1.02920 0.96127 0.94511 1.70100 1.26317 1.11314 1.49329 0.85433 0.78354 0.78993 0.78186 1.20012 1.20256 1.18742 1.25643 0.92847 0.96134 0.98734 1.69836 1.28919 1.27153 0.98815 1.22793 0.96909 1.01827 0.98951 1.22864 1.05457 1.05085 0.82445 1.46952 1.27326 1.33003 1.07860 0.91921 0.87792 0.91406 0.86971 0.85808 0.84786 0.91587 0.97221 0.99710 0.97807 0.92674 0.79594 0.77609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.46 71.98 0.68 -0.89 16 2 C 0.12 2.09 4.13 45.40 0.19 2.27 16 3 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.10 -1.86 6.39 31.62 0.20 -1.65 16 5 C 0.16 4.53 3.23 44.97 0.15 4.68 16 6 H 0.10 2.92 7.87 -2.39 -0.02 2.91 16 7 N -0.66 -23.67 6.30 -491.30 -3.09 -26.77 16 8 C 0.08 3.80 5.46 86.31 0.47 4.28 16 9 C 0.04 1.99 5.23 29.85 0.16 2.14 16 10 C -0.55 -32.57 9.11 25.60 0.23 -32.33 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 14 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 18 C 0.13 4.28 7.86 138.36 1.09 5.37 16 19 N -0.53 -19.86 11.26 -187.33 -2.11 -21.97 16 20 C -0.06 -1.68 11.86 83.52 0.99 -0.68 16 21 C -0.03 -0.59 12.00 83.01 1.00 0.40 16 22 N -0.47 -11.65 3.27 -486.78 -1.59 -13.24 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 1.52 7.92 -2.39 -0.02 1.50 16 27 H 0.12 2.01 8.09 -2.39 -0.02 1.99 16 28 H 0.33 12.43 8.49 -89.69 -0.76 11.67 16 29 H 0.07 2.90 8.08 -2.38 -0.02 2.88 16 30 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -74.66 294.71 1.43 -73.23 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.31 Total: 14.42 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.61 Total: -15.78 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.51 Total: -119.64 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.66 1.43 -73.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462093279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.483 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds