Wall clock time and date at job start Sun Mar 29 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 110.27170 * 2 1 4 4 C 1.54381 * 110.23520 * 238.05463 * 2 1 3 5 5 C 1.54544 * 101.77040 * 215.27664 * 4 2 1 6 6 H 1.08996 * 110.47661 * 266.35654 * 5 4 2 7 7 N 1.46901 * 110.47664 * 143.86882 * 5 4 2 8 8 C 1.46896 * 110.99831 * 154.99894 * 7 5 4 9 9 C 1.52998 * 109.47029 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.51563 * 104.23855 * 25.18057 * 5 4 2 19 19 N 1.30912 * 141.44189 * 163.44392 * 18 5 4 20 20 C 1.34009 * 109.29825 * 180.15554 * 19 18 5 21 21 C 1.34564 * 108.03287 * 359.91950 * 20 19 18 22 22 N 1.34817 * 109.94652 * 343.41203 * 18 5 4 23 23 H 1.09003 * 109.47423 * 181.94477 * 1 2 3 24 24 H 1.09004 * 109.47194 * 301.94689 * 1 2 3 25 25 H 1.09000 * 109.47251 * 61.94599 * 1 2 3 26 26 H 1.09001 * 110.97208 * 97.15932 * 4 2 1 27 27 H 1.08999 * 110.97036 * 333.39853 * 4 2 1 28 28 H 1.00897 * 111.00079 * 278.95278 * 7 5 4 29 29 H 1.09000 * 109.47274 * 60.00200 * 8 7 5 30 30 H 1.09002 * 109.47154 * 299.99707 * 8 7 5 31 31 H 1.09001 * 109.47671 * 60.00253 * 9 8 7 32 32 H 1.09006 * 109.47297 * 299.99972 * 9 8 7 33 33 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 34 34 H 1.07991 * 125.98086 * 179.89925 * 20 19 18 35 35 H 1.07997 * 126.58226 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0639 -0.7664 -1.2292 5 6 3.3319 -1.4383 -0.6553 6 1 4.2087 -0.8175 -0.8390 7 7 3.5165 -2.7726 -1.2415 8 6 4.9288 -3.1746 -1.2010 9 6 5.0810 -4.5657 -1.8193 10 6 6.5298 -4.9785 -1.7772 11 1 7.2683 -4.3146 -1.3523 12 6 6.9126 -6.2034 -2.2811 13 7 6.0135 -7.0115 -2.7990 14 14 8.7086 -6.7145 -2.2295 15 1 9.3859 -6.2696 -3.4739 16 1 9.3681 -6.0880 -1.0558 17 1 8.7995 -8.1926 -2.1178 18 6 3.0566 -1.5457 0.8312 19 7 3.4728 -2.1642 1.9073 20 6 2.7383 -1.7701 2.9567 21 6 1.8347 -0.8739 2.5196 22 7 2.0384 -0.7298 1.1705 23 1 -0.3634 -1.0271 0.0349 24 1 -0.3634 0.5438 0.8720 25 1 -0.3634 0.4833 -0.9069 26 1 2.3179 -0.0800 -2.0369 27 1 1.3450 -1.5134 -1.5657 28 1 2.9331 -3.4543 -0.7799 29 1 5.2706 -3.1971 -0.1662 30 1 5.5265 -2.4591 -1.7657 31 1 4.7394 -4.5429 -2.8542 32 1 4.4831 -5.2816 -1.2551 33 1 5.0810 -6.7459 -2.8261 34 1 2.8517 -2.1121 3.9747 35 1 1.0924 -0.3648 3.1164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462093284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:02 Heat of formation + Delta-G solvation = 61.561680 kcal Electronic energy + Delta-G solvation = -16328.185218 eV Core-core repulsion = 13747.975093 eV Total energy + Delta-G solvation = -2580.210124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.45083 -37.37385 -35.47470 -33.24117 -30.94761 -30.47791 -28.52112 -27.45824 -24.30416 -23.09324 -22.03741 -20.95551 -20.41603 -19.76714 -17.34356 -16.65167 -15.62198 -15.07075 -14.55409 -14.37652 -14.04797 -13.80525 -13.64971 -13.14990 -13.11640 -12.70573 -12.46316 -12.25824 -11.87895 -11.71723 -11.25522 -10.98932 -10.78117 -10.16572 -10.05473 -9.76951 -9.66926 -9.56218 -8.55955 -8.43948 -8.23493 -7.94727 -6.27409 -3.95212 2.06128 2.67250 3.23221 3.49877 3.54634 3.70225 3.83156 4.23952 4.34449 4.55202 4.61852 4.75135 4.87353 5.04616 5.17643 5.27843 5.31447 5.50875 5.54369 5.61580 5.67896 5.72039 5.86066 6.24373 6.33653 6.49191 6.88907 6.92952 7.06302 7.23004 7.56588 7.65974 7.80591 8.23981 8.33557 8.56573 8.98289 9.76781 11.13971 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040763 B = 0.005041 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.725324 B = 5552.947807 C = 5957.553648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.095 0.905 4 C -0.115 4.115 5 C 0.165 3.835 6 H 0.103 0.897 7 N -0.670 5.670 8 C 0.069 3.931 9 C 0.014 3.986 10 C -0.599 4.599 11 H 0.048 0.952 12 C 0.015 3.985 13 N -0.915 5.915 14 Si 1.072 2.928 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.285 1.285 18 C 0.162 3.838 19 N -0.473 5.473 20 C -0.024 4.024 21 C -0.045 4.045 22 N -0.476 5.476 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.344 0.656 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.005 0.995 33 H 0.269 0.731 34 H 0.171 0.829 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 16.527 6.386 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.113 0.887 4 C -0.154 4.154 5 C 0.051 3.949 6 H 0.121 0.879 7 N -0.299 5.299 8 C -0.058 4.058 9 C -0.024 4.024 10 C -0.638 4.638 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.552 5.552 14 Si 0.901 3.099 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.103 4.103 19 N -0.191 5.191 20 C -0.173 4.173 21 C -0.177 4.177 22 N -0.160 5.160 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.162 0.838 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.189 0.811 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.489 15.121 5.367 19.170 hybrid contribution -1.709 1.738 1.674 2.957 sum -12.198 16.859 7.041 21.968 Atomic orbital electron populations 1.22082 0.93025 1.03421 1.03089 1.22138 0.95854 0.96330 0.83164 0.88747 1.22909 0.97132 0.99716 0.95614 1.20878 0.98312 0.94733 0.80959 0.87949 1.60850 1.10791 1.01642 1.56665 1.22112 0.84955 0.99431 0.99351 1.19184 0.97365 0.90257 0.95580 1.22013 0.93011 1.04935 1.43812 0.93334 1.25822 1.06239 0.93225 0.93591 1.70739 1.03420 1.38319 1.42674 0.83508 0.74179 0.76088 0.76170 1.21506 1.21503 1.21050 1.25643 0.91548 0.94675 0.98406 1.69977 1.27222 1.24942 0.96968 1.22360 0.96301 1.00030 0.98612 1.22282 1.06123 1.06791 0.82482 1.46645 1.28697 1.33702 1.06992 0.91439 0.92066 0.90152 0.87989 0.88606 0.83813 0.94844 0.92214 0.96705 0.97683 0.92049 0.81134 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.44 37.16 0.35 -0.78 16 2 C 0.13 1.18 4.13 -66.93 -0.28 0.90 16 3 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 4 C -0.11 -1.18 6.37 -25.20 -0.16 -1.34 16 5 C 0.16 2.42 3.26 -67.63 -0.22 2.20 16 6 H 0.10 1.49 7.82 -51.93 -0.41 1.08 16 7 N -0.67 -12.15 6.32 -106.64 -0.67 -12.82 16 8 C 0.07 1.54 5.48 -3.83 -0.02 1.52 16 9 C 0.01 0.36 4.54 -27.88 -0.13 0.24 16 10 C -0.60 -17.81 9.11 -34.44 -0.31 -18.13 16 11 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 12 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 13 N -0.92 -28.96 13.65 55.43 0.76 -28.21 16 14 Si 1.07 26.26 29.90 -169.99 -5.08 21.17 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.16 2.63 7.91 -154.85 -1.23 1.41 16 19 N -0.47 -8.75 11.26 -10.56 -0.12 -8.87 16 20 C -0.02 -0.36 11.86 -17.90 -0.21 -0.57 16 21 C -0.04 -0.55 12.00 -16.45 -0.20 -0.75 16 22 N -0.48 -6.13 3.27 -105.27 -0.34 -6.48 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 28 H 0.34 6.48 8.44 -39.29 -0.33 6.15 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 31 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 32 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 33 H 0.27 8.51 7.22 -40.82 -0.29 8.21 16 34 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 293.44 15.07 4.42 4.42 Total: -1.00 -34.65 293.44 -8.82 -43.47 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.28 Total: 2.26 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.50 Total: -14.95 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.38 Total: -56.37 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.65 -8.82 -43.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462093284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.027 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds