Wall clock time and date at job start Sun Mar 29 2020 22:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 110.27170 * 2 1 4 4 C 1.54381 * 110.23520 * 238.05463 * 2 1 3 5 5 C 1.54544 * 101.77040 * 215.27664 * 4 2 1 6 6 H 1.08996 * 110.47661 * 266.35654 * 5 4 2 7 7 N 1.46901 * 110.47664 * 143.86882 * 5 4 2 8 8 C 1.46896 * 110.99831 * 154.99894 * 7 5 4 9 9 C 1.52998 * 109.47029 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.51563 * 104.23855 * 25.18057 * 5 4 2 19 19 N 1.30912 * 141.44189 * 163.44392 * 18 5 4 20 20 C 1.34009 * 109.29825 * 180.15554 * 19 18 5 21 21 C 1.34564 * 108.03287 * 359.91950 * 20 19 18 22 22 N 1.34817 * 109.94652 * 343.41203 * 18 5 4 23 23 H 1.09003 * 109.47423 * 181.94477 * 1 2 3 24 24 H 1.09004 * 109.47194 * 301.94689 * 1 2 3 25 25 H 1.09000 * 109.47251 * 61.94599 * 1 2 3 26 26 H 1.09001 * 110.97208 * 97.15932 * 4 2 1 27 27 H 1.08999 * 110.97036 * 333.39853 * 4 2 1 28 28 H 1.00897 * 111.00079 * 278.95278 * 7 5 4 29 29 H 1.09000 * 109.47274 * 60.00200 * 8 7 5 30 30 H 1.09002 * 109.47154 * 299.99707 * 8 7 5 31 31 H 1.09001 * 109.47671 * 60.00253 * 9 8 7 32 32 H 1.09006 * 109.47297 * 299.99972 * 9 8 7 33 33 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 34 34 H 1.07991 * 125.98086 * 179.89925 * 20 19 18 35 35 H 1.07997 * 126.58226 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0639 -0.7664 -1.2292 5 6 3.3319 -1.4383 -0.6553 6 1 4.2087 -0.8175 -0.8390 7 7 3.5165 -2.7726 -1.2415 8 6 4.9288 -3.1746 -1.2010 9 6 5.0810 -4.5657 -1.8193 10 6 6.5298 -4.9785 -1.7772 11 1 7.2683 -4.3146 -1.3523 12 6 6.9126 -6.2034 -2.2811 13 7 6.0135 -7.0115 -2.7990 14 14 8.7086 -6.7145 -2.2295 15 1 9.3859 -6.2696 -3.4739 16 1 9.3681 -6.0880 -1.0558 17 1 8.7995 -8.1926 -2.1178 18 6 3.0566 -1.5457 0.8312 19 7 3.4728 -2.1642 1.9073 20 6 2.7383 -1.7701 2.9567 21 6 1.8347 -0.8739 2.5196 22 7 2.0384 -0.7298 1.1705 23 1 -0.3634 -1.0271 0.0349 24 1 -0.3634 0.5438 0.8720 25 1 -0.3634 0.4833 -0.9069 26 1 2.3179 -0.0800 -2.0369 27 1 1.3450 -1.5134 -1.5657 28 1 2.9331 -3.4543 -0.7799 29 1 5.2706 -3.1971 -0.1662 30 1 5.5265 -2.4591 -1.7657 31 1 4.7394 -4.5429 -2.8542 32 1 4.4831 -5.2816 -1.2551 33 1 5.0810 -6.7459 -2.8261 34 1 2.8517 -2.1121 3.9747 35 1 1.0924 -0.3648 3.1164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462093284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:01 Heat of formation + Delta-G solvation = 37.647248 kcal Electronic energy + Delta-G solvation = -16329.222225 eV Core-core repulsion = 13747.975093 eV Total energy + Delta-G solvation = -2581.247132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.49150 -38.52786 -36.92998 -35.25037 -32.45622 -31.39563 -30.00668 -28.66612 -25.97234 -24.55656 -23.06269 -22.83654 -21.45230 -20.87165 -18.89503 -18.29875 -16.72384 -16.51357 -15.83594 -15.67298 -15.50806 -15.00881 -14.97491 -14.72095 -14.45553 -13.81446 -13.67808 -13.40875 -13.14303 -13.04442 -12.72286 -12.39469 -12.14364 -12.04322 -11.93824 -11.64088 -10.92415 -10.73971 -10.61033 -10.54672 -9.80158 -9.26546 -8.70262 -6.39772 1.02332 1.52242 1.62679 1.79320 1.80677 2.08782 2.56384 2.78792 3.16015 3.20620 3.42680 3.73495 3.83110 4.05617 4.16388 4.18557 4.39597 4.48726 4.51974 4.63414 4.68900 4.72817 4.87874 4.93790 4.96711 5.14476 5.23143 5.33879 5.42152 5.82607 5.84180 6.03159 6.10013 6.17501 6.20633 6.57492 7.14972 7.42319 8.71227 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040763 B = 0.005041 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.725324 B = 5552.947807 C = 5957.553648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 H 0.120 0.880 4 C -0.104 4.104 5 C 0.159 3.841 6 H 0.102 0.898 7 N -0.665 5.665 8 C 0.092 3.908 9 C 0.019 3.981 10 C -0.620 4.620 11 H 0.048 0.952 12 C -0.038 4.038 13 N -0.936 5.936 14 Si 1.123 2.877 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.281 1.281 18 C 0.130 3.870 19 N -0.530 5.530 20 C -0.058 4.058 21 C -0.022 4.022 22 N -0.468 5.468 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.337 0.663 29 H 0.012 0.988 30 H 0.066 0.934 31 H -0.001 1.001 32 H -0.020 1.020 33 H 0.255 0.745 34 H 0.186 0.814 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 18.756 6.460 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.138 0.862 4 C -0.142 4.142 5 C 0.046 3.954 6 H 0.120 0.880 7 N -0.293 5.293 8 C -0.037 4.037 9 C -0.018 4.018 10 C -0.658 4.658 11 H 0.067 0.933 12 C -0.235 4.235 13 N -0.573 5.573 14 Si 0.943 3.057 15 H -0.193 1.193 16 H -0.197 1.197 17 H -0.206 1.206 18 C -0.135 4.135 19 N -0.250 5.250 20 C -0.206 4.206 21 C -0.155 4.155 22 N -0.152 5.152 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.150 0.850 27 H 0.111 0.889 28 H 0.154 0.846 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.017 0.983 32 H -0.001 1.001 33 H 0.064 0.936 34 H 0.203 0.797 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.218 17.398 5.426 21.400 hybrid contribution -1.574 1.093 1.706 2.566 sum -12.792 18.491 7.132 23.588 Atomic orbital electron populations 1.22067 0.90977 1.02935 1.04962 1.22475 0.97393 0.96704 0.80960 0.86198 1.22949 0.94515 0.99891 0.96868 1.21116 1.00787 0.92602 0.80914 0.88015 1.60797 1.07861 1.03263 1.57385 1.21672 0.87791 0.96848 0.97418 1.19062 0.95767 0.92511 0.94505 1.22434 0.94325 1.05366 1.43699 0.93348 1.27489 1.10212 0.93372 0.92416 1.70879 1.03104 1.39000 1.44348 0.82879 0.69089 0.76057 0.77667 1.19251 1.19741 1.20645 1.25637 0.93190 0.96164 0.98484 1.69850 1.29472 1.26931 0.98785 1.22795 0.97318 1.01573 0.98869 1.22867 1.05241 1.05019 0.82401 1.46934 1.27490 1.32887 1.07895 0.93008 0.90900 0.87653 0.85006 0.88911 0.84562 0.97000 0.91600 0.98281 1.00123 0.93562 0.79700 0.77362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.44 71.98 0.68 -0.90 16 2 C 0.13 1.90 4.13 45.36 0.19 2.08 16 3 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.10 -1.87 6.37 31.59 0.20 -1.67 16 5 C 0.16 4.58 3.26 44.97 0.15 4.73 16 6 H 0.10 2.90 7.82 -2.39 -0.02 2.88 16 7 N -0.66 -24.61 6.32 -491.30 -3.10 -27.71 16 8 C 0.09 4.20 5.48 86.30 0.47 4.68 16 9 C 0.02 1.06 4.54 29.85 0.14 1.20 16 10 C -0.62 -37.71 9.11 25.60 0.23 -37.47 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 13 N -0.94 -60.50 13.65 21.45 0.29 -60.21 16 14 Si 1.12 52.54 29.90 68.60 2.05 54.59 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 C 0.13 4.21 7.91 138.35 1.09 5.30 16 19 N -0.53 -20.14 11.26 -187.33 -2.11 -22.25 16 20 C -0.06 -1.69 11.86 83.52 0.99 -0.70 16 21 C -0.02 -0.50 12.00 83.01 1.00 0.50 16 22 N -0.47 -11.11 3.27 -486.96 -1.59 -12.71 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.76 7.86 -2.39 -0.02 1.74 16 28 H 0.34 13.26 8.44 -89.70 -0.76 12.51 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 2.91 8.08 -2.39 -0.02 2.89 16 31 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 32 H -0.02 -1.18 8.01 -2.38 -0.02 -1.20 16 33 H 0.25 16.75 7.22 -92.71 -0.67 16.08 16 34 H 0.19 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -78.09 293.44 1.55 -76.53 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.41 Total: 15.82 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 5.60 Total: -24.07 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.51 Total: -122.88 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.05 Total: 54.59 kcal Total: -78.09 1.55 -76.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462093284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.182 kcal (2) G-P(sol) polarization free energy of solvation -78.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds