Wall clock time and date at job start Sun Mar 29 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34131 * 125.99078 * 2 1 4 4 C 1.30500 * 109.25604 * 180.11132 * 3 2 1 5 5 C 1.50699 * 125.64675 * 179.89296 * 4 3 2 6 6 H 1.09003 * 109.99524 * 184.33871 * 5 4 3 7 7 C 1.54312 * 109.77561 * 305.49034 * 5 4 3 8 8 C 1.55162 * 102.86361 * 141.88826 * 7 5 4 9 9 C 1.54914 * 101.57980 * 324.30275 * 8 7 5 10 10 N 1.47023 * 109.88192 * 63.24315 * 5 4 3 11 11 C 1.36931 * 125.64764 * 61.67683 * 10 5 4 12 12 H 1.08002 * 120.00438 * 359.71989 * 11 10 5 13 13 C 1.38817 * 119.99680 * 179.43947 * 11 10 5 14 14 N 1.31614 * 119.99888 * 0.27479 * 13 11 10 15 15 Si 1.86803 * 119.99862 * 180.27671 * 13 11 10 16 16 H 1.48508 * 109.46872 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 119.99997 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00044 * 15 13 11 19 19 N 1.35043 * 108.69998 * 359.63292 * 4 3 2 20 20 H 0.97004 * 126.39409 * 180.24529 * 19 4 3 21 21 C 1.34678 * 125.99083 * 179.69917 * 2 1 3 22 22 C 1.50701 * 126.58911 * 0.06991 * 21 2 1 23 23 H 1.08998 * 109.47528 * 270.29385 * 1 2 3 24 24 H 1.08994 * 109.47488 * 30.30111 * 1 2 3 25 25 H 1.09004 * 109.47248 * 150.30053 * 1 2 3 26 26 H 1.09004 * 110.92374 * 23.47009 * 7 5 4 27 27 H 1.09003 * 110.74661 * 260.21643 * 7 5 4 28 28 H 1.09000 * 111.00438 * 206.23188 * 8 7 5 29 29 H 1.08999 * 111.00310 * 82.37926 * 8 7 5 30 30 H 1.09000 * 110.36812 * 278.17395 * 9 8 7 31 31 H 1.08997 * 110.36807 * 155.84790 * 9 8 7 32 32 H 0.97005 * 119.99715 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47102 * 269.98239 * 22 21 2 34 34 H 1.08996 * 109.46836 * 29.98311 * 22 21 2 35 35 H 1.09000 * 109.46776 * 149.98231 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 -0.0024 5 6 4.7386 1.6294 -0.0055 6 1 5.6571 1.0478 -0.0846 7 6 4.6350 2.6151 -1.1883 8 6 5.1795 3.9369 -0.5850 9 6 4.6536 3.8546 0.8698 10 7 4.7573 2.4284 1.2285 11 6 4.8600 1.9307 2.5000 12 1 4.9316 0.8648 2.6586 13 6 4.8779 2.7966 3.5849 14 7 4.7907 4.0955 3.3916 15 14 5.0258 2.1181 5.3190 16 1 5.1075 0.6363 5.2655 17 1 6.2515 2.6591 5.9594 18 1 3.8353 2.5195 6.1108 19 7 3.5912 -0.6401 0.0042 20 1 4.3913 -1.1885 0.0075 21 6 2.2984 -1.0897 0.0057 22 6 1.8472 -2.5276 0.0118 23 1 -0.3634 0.0053 1.0276 24 1 -0.3634 0.8872 -0.5185 25 1 -0.3634 -0.8927 -0.5092 26 1 3.5992 2.7341 -1.5063 27 1 5.2571 2.2861 -2.0207 28 1 4.7648 4.8023 -1.1020 29 1 6.2691 3.9562 -0.6061 30 1 3.6153 4.1831 0.9170 31 1 5.2738 4.4584 1.5321 32 1 4.8029 4.7006 4.1498 33 1 1.7377 -2.8697 1.0409 34 1 0.8897 -2.6100 -0.5023 35 1 2.5880 -3.1429 -0.4988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473790660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:18 Heat of formation + Delta-G solvation = 72.245208 kcal Electronic energy + Delta-G solvation = -17011.243369 eV Core-core repulsion = 14431.496517 eV Total energy + Delta-G solvation = -2579.746852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47685 -37.24683 -32.73810 -32.52281 -32.01782 -29.40551 -28.19745 -28.04211 -24.73962 -23.92239 -21.21675 -20.13985 -19.62273 -18.82659 -17.07282 -16.40241 -15.16995 -14.75067 -14.49095 -13.87232 -13.34118 -13.07491 -12.73197 -12.48631 -12.27055 -12.10239 -11.92650 -11.85092 -11.72267 -11.45784 -10.99336 -10.83804 -10.55906 -10.09140 -9.90294 -9.81304 -9.49449 -9.16094 -9.11620 -8.63786 -7.48905 -6.86045 -5.64275 -3.06647 2.59843 3.38805 3.44323 3.46910 3.67266 3.79540 4.50136 5.04847 5.28751 5.32165 5.43795 5.59165 5.61505 5.63071 5.68474 5.77085 5.89365 5.94675 6.05291 6.07878 6.20311 6.29285 6.42616 6.56150 6.69554 6.78579 6.84710 7.00894 7.42641 7.59220 7.70071 7.89395 8.02763 8.37988 8.89807 9.21759 9.81693 10.45856 11.38463 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.009582 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.013177 B = 2921.423531 C = 3686.151201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.003 4.003 3 N -0.475 5.475 4 C 0.234 3.766 5 C 0.236 3.764 6 H 0.045 0.955 7 C -0.115 4.115 8 C -0.145 4.145 9 C 0.153 3.847 10 N -0.575 5.575 11 C -0.220 4.220 12 H 0.071 0.929 13 C -0.006 4.006 14 N -0.915 5.915 15 Si 0.913 3.087 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.290 1.290 19 N -0.570 5.570 20 H 0.409 0.591 21 C -0.058 4.058 22 C -0.067 4.067 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -8.825 -8.658 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 N -0.194 5.194 4 C -0.034 4.034 5 C 0.124 3.876 6 H 0.063 0.937 7 C -0.154 4.154 8 C -0.184 4.184 9 C 0.028 3.972 10 N -0.297 5.297 11 C -0.348 4.348 12 H 0.089 0.911 13 C -0.202 4.202 14 N -0.563 5.563 15 Si 0.744 3.256 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.217 1.217 19 N -0.173 5.173 20 H 0.246 0.754 21 C -0.172 4.172 22 C -0.125 4.125 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.865 -7.884 -8.396 11.869 hybrid contribution 0.559 -1.610 1.091 2.023 sum -2.306 -9.494 -7.305 12.199 Atomic orbital electron populations 1.19938 0.88681 1.01630 1.01620 1.20488 0.96050 0.88580 1.08163 1.70118 0.99993 1.29393 1.19903 1.25046 0.96691 0.80711 1.00924 1.19453 0.88607 0.89932 0.89561 0.93700 1.22506 1.01588 0.95810 0.95524 1.23006 0.99813 0.95742 0.99822 1.22004 0.99033 0.85736 0.90391 1.44601 1.83803 1.01496 0.99796 1.18973 1.42758 0.91700 0.81410 0.91079 1.24760 1.02042 0.95482 0.97887 1.69826 1.56763 1.00908 1.28763 0.86024 0.77311 0.77766 0.84509 1.20750 1.21632 1.21680 1.43283 1.07418 1.08540 1.58052 0.75407 1.20782 0.84456 0.96674 1.15331 1.20082 1.01129 0.89324 1.01984 0.91963 0.91650 0.92172 0.90654 0.92359 0.92166 0.92266 0.96432 0.87476 0.93716 0.91668 0.90657 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.22 36.00 0.37 -0.55 16 2 C 0.00 -0.06 7.09 -82.85 -0.59 -0.65 16 3 N -0.47 -10.82 10.90 -7.07 -0.08 -10.90 16 4 C 0.23 4.97 6.69 -155.42 -1.04 3.93 16 5 C 0.24 5.07 3.67 -68.11 -0.25 4.82 16 6 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.12 -2.17 6.46 -24.90 -0.16 -2.33 16 8 C -0.15 -2.85 7.08 -24.58 -0.17 -3.02 16 9 C 0.15 3.84 5.90 -2.52 -0.01 3.83 16 10 N -0.57 -14.94 3.12 -163.88 -0.51 -15.45 16 11 C -0.22 -6.23 9.95 -15.06 -0.15 -6.38 16 12 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 13 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 14 N -0.91 -27.08 10.08 55.49 0.56 -26.52 16 15 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 N -0.57 -10.08 6.15 -6.54 -0.04 -10.12 16 20 H 0.41 5.89 8.96 -40.82 -0.37 5.52 16 21 C -0.06 -0.98 7.24 -81.60 -0.59 -1.57 16 22 C -0.07 -0.79 10.22 36.01 0.37 -0.43 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.72 7.17 -51.93 -0.37 0.34 16 26 H 0.07 1.49 7.58 -51.93 -0.39 1.09 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.11 2.96 5.86 -51.93 -0.30 2.66 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.76 7.17 -51.93 -0.37 0.39 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -33.09 287.29 -8.25 -41.34 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.16 Total: 2.30 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.33 Total: -2.62 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.07 Total: -62.99 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.09 -8.25 -41.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473790660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.585 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds