Wall clock time and date at job start Sun Mar 29 2020 21:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34131 * 125.99078 * 2 1 4 4 C 1.30500 * 109.25604 * 180.11132 * 3 2 1 5 5 C 1.50699 * 125.64675 * 179.89296 * 4 3 2 6 6 H 1.09003 * 109.99524 * 184.33871 * 5 4 3 7 7 C 1.54312 * 109.77561 * 305.49034 * 5 4 3 8 8 C 1.55162 * 102.86361 * 141.88826 * 7 5 4 9 9 C 1.54914 * 101.57980 * 324.30275 * 8 7 5 10 10 N 1.47023 * 109.88192 * 63.24315 * 5 4 3 11 11 C 1.36931 * 125.64764 * 61.67683 * 10 5 4 12 12 H 1.08002 * 120.00438 * 359.71989 * 11 10 5 13 13 C 1.38817 * 119.99680 * 179.43947 * 11 10 5 14 14 N 1.31614 * 119.99888 * 0.27479 * 13 11 10 15 15 Si 1.86803 * 119.99862 * 180.27671 * 13 11 10 16 16 H 1.48508 * 109.46872 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 119.99997 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00044 * 15 13 11 19 19 N 1.35043 * 108.69998 * 359.63292 * 4 3 2 20 20 H 0.97004 * 126.39409 * 180.24529 * 19 4 3 21 21 C 1.34678 * 125.99083 * 179.69917 * 2 1 3 22 22 C 1.50701 * 126.58911 * 0.06991 * 21 2 1 23 23 H 1.08998 * 109.47528 * 270.29385 * 1 2 3 24 24 H 1.08994 * 109.47488 * 30.30111 * 1 2 3 25 25 H 1.09004 * 109.47248 * 150.30053 * 1 2 3 26 26 H 1.09004 * 110.92374 * 23.47009 * 7 5 4 27 27 H 1.09003 * 110.74661 * 260.21643 * 7 5 4 28 28 H 1.09000 * 111.00438 * 206.23188 * 8 7 5 29 29 H 1.08999 * 111.00310 * 82.37926 * 8 7 5 30 30 H 1.09000 * 110.36812 * 278.17395 * 9 8 7 31 31 H 1.08997 * 110.36807 * 155.84790 * 9 8 7 32 32 H 0.97005 * 119.99715 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47102 * 269.98239 * 22 21 2 34 34 H 1.08996 * 109.46836 * 29.98311 * 22 21 2 35 35 H 1.09000 * 109.46776 * 149.98231 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 -0.0024 5 6 4.7386 1.6294 -0.0055 6 1 5.6571 1.0478 -0.0846 7 6 4.6350 2.6151 -1.1883 8 6 5.1795 3.9369 -0.5850 9 6 4.6536 3.8546 0.8698 10 7 4.7573 2.4284 1.2285 11 6 4.8600 1.9307 2.5000 12 1 4.9316 0.8648 2.6586 13 6 4.8779 2.7966 3.5849 14 7 4.7907 4.0955 3.3916 15 14 5.0258 2.1181 5.3190 16 1 5.1075 0.6363 5.2655 17 1 6.2515 2.6591 5.9594 18 1 3.8353 2.5195 6.1108 19 7 3.5912 -0.6401 0.0042 20 1 4.3913 -1.1885 0.0075 21 6 2.2984 -1.0897 0.0057 22 6 1.8472 -2.5276 0.0118 23 1 -0.3634 0.0053 1.0276 24 1 -0.3634 0.8872 -0.5185 25 1 -0.3634 -0.8927 -0.5092 26 1 3.5992 2.7341 -1.5063 27 1 5.2571 2.2861 -2.0207 28 1 4.7648 4.8023 -1.1020 29 1 6.2691 3.9562 -0.6061 30 1 3.6153 4.1831 0.9170 31 1 5.2738 4.4584 1.5321 32 1 4.8029 4.7006 4.1498 33 1 1.7377 -2.8697 1.0409 34 1 0.8897 -2.6100 -0.5023 35 1 2.5880 -3.1429 -0.4988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473790660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:18 Heat of formation + Delta-G solvation = 50.482276 kcal Electronic energy + Delta-G solvation = -17012.187080 eV Core-core repulsion = 14431.496517 eV Total energy + Delta-G solvation = -2580.690563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.92355 -39.01362 -34.64318 -33.98462 -33.39318 -31.30746 -29.80954 -29.29295 -26.66206 -25.41094 -22.81451 -21.91271 -21.20915 -20.31764 -18.91063 -18.00931 -17.06091 -16.25982 -16.09579 -15.76007 -14.83251 -14.38669 -13.93228 -13.81065 -13.71256 -13.60967 -13.55387 -13.29415 -13.16550 -12.92468 -12.83928 -12.77132 -12.12743 -12.03315 -11.86357 -11.49696 -11.36336 -10.78148 -10.64810 -10.61233 -9.04509 -8.77348 -7.78198 -5.23041 1.19445 1.40104 1.42386 1.51084 2.23107 2.34848 2.48573 3.30526 3.63583 3.80241 4.05570 4.10369 4.22633 4.26074 4.36164 4.48725 4.58581 4.63004 4.74188 4.89046 4.92167 5.05077 5.08208 5.11404 5.20460 5.21021 5.41248 5.46367 5.47518 5.71449 5.82327 6.05669 6.29862 6.67890 7.08595 7.42689 7.75138 8.39571 9.22910 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.009582 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.013177 B = 2921.423531 C = 3686.151201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.046 4.046 3 N -0.519 5.519 4 C 0.206 3.794 5 C 0.229 3.771 6 H 0.063 0.937 7 C -0.104 4.104 8 C -0.129 4.129 9 C 0.155 3.845 10 N -0.595 5.595 11 C -0.225 4.225 12 H 0.070 0.930 13 C -0.066 4.066 14 N -0.944 5.944 15 Si 0.976 3.024 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.297 1.297 19 N -0.561 5.561 20 H 0.425 0.575 21 C -0.037 4.037 22 C -0.065 4.065 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.075 0.925 30 H -0.025 1.025 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 -11.411 -9.775 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.175 4.175 3 N -0.240 5.240 4 C -0.061 4.061 5 C 0.119 3.881 6 H 0.080 0.920 7 C -0.142 4.142 8 C -0.168 4.168 9 C 0.031 3.969 10 N -0.318 5.318 11 C -0.354 4.354 12 H 0.088 0.912 13 C -0.258 4.258 14 N -0.594 5.594 15 Si 0.804 3.196 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.225 1.225 19 N -0.166 5.166 20 H 0.264 0.736 21 C -0.153 4.153 22 C -0.123 4.123 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.093 0.907 30 H -0.007 1.007 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.687 -10.515 -9.550 14.456 hybrid contribution 0.454 -0.894 1.379 1.705 sum -2.233 -11.409 -8.170 14.210 Atomic orbital electron populations 1.20006 0.86481 1.03054 1.01852 1.21204 0.97866 0.88559 1.09850 1.70030 1.01298 1.31882 1.20770 1.24592 0.96113 0.82134 1.03303 1.19675 0.89354 0.90505 0.88563 0.91964 1.22471 1.01583 0.94485 0.95707 1.22868 1.00653 0.97340 0.95921 1.21757 0.96117 0.85464 0.93603 1.44789 1.84066 1.02375 1.00572 1.19223 1.41615 0.91659 0.82894 0.91221 1.25575 1.02823 0.95892 1.01522 1.70069 1.58217 1.01879 1.29193 0.85053 0.76837 0.77672 0.80002 1.19521 1.21062 1.22489 1.43227 1.08615 1.07644 1.57082 0.73614 1.21578 0.83495 0.98623 1.11608 1.20280 1.02826 0.85928 1.03244 0.92218 0.92534 0.88497 0.92013 0.88234 0.90038 0.90655 1.00716 0.90477 0.94353 0.90733 0.88425 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.22 71.23 0.73 -0.90 16 2 C -0.05 -1.73 7.09 41.39 0.29 -1.44 16 3 N -0.52 -23.82 10.90 -176.28 -1.92 -25.74 16 4 C 0.21 8.62 6.69 138.13 0.92 9.54 16 5 C 0.23 9.67 3.67 44.59 0.16 9.83 16 6 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 7 C -0.10 -3.75 6.46 31.78 0.21 -3.55 16 8 C -0.13 -4.96 7.08 31.99 0.23 -4.74 16 9 C 0.16 8.10 5.90 86.86 0.51 8.61 16 10 N -0.60 -31.48 3.12 -672.39 -2.10 -33.57 16 11 C -0.22 -12.94 9.95 84.04 0.84 -12.10 16 12 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 13 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 14 N -0.94 -58.09 10.08 21.65 0.22 -57.87 16 15 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 19 N -0.56 -18.75 6.15 -174.60 -1.07 -19.83 16 20 H 0.42 11.14 8.96 -92.71 -0.83 10.31 16 21 C -0.04 -1.16 7.24 40.96 0.30 -0.87 16 22 C -0.07 -1.26 10.22 71.24 0.73 -0.53 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.10 2.00 7.17 -2.38 -0.02 1.98 16 26 H 0.06 2.40 7.58 -2.38 -0.02 2.39 16 27 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 31 H 0.08 4.47 5.86 -2.39 -0.01 4.46 16 32 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.50 7.17 -2.39 -0.02 1.48 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -74.96 287.29 2.79 -72.17 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.26 Total: 14.92 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.38 Total: 0.49 kcal Atomic # 7 Polarization: -132.14 SS G_CDS: -4.87 Total: -137.01 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -74.96 2.79 -72.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473790660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.651 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds