Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35041 * 126.39693 * 2 1 4 4 N 1.30498 * 108.69589 * 180.27135 * 3 2 1 5 5 C 1.34127 * 109.26114 * 359.76476 * 4 3 2 6 6 C 1.34675 * 108.01595 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.59106 * 179.97438 * 6 5 4 8 8 C 1.53042 * 109.46020 * 35.01904 * 7 6 5 9 9 C 1.53190 * 109.31004 * 178.63185 * 8 7 6 10 10 N 1.46923 * 108.77961 * 54.63924 * 9 8 7 11 11 C 1.36935 * 120.63374 * 126.36332 * 10 9 8 12 12 H 1.07998 * 119.99964 * 332.39418 * 11 10 9 13 13 C 1.38818 * 119.99962 * 152.38709 * 11 10 9 14 14 N 1.31621 * 119.99780 * 335.26864 * 13 11 10 15 15 Si 1.86796 * 119.99944 * 154.99519 * 13 11 10 16 16 H 1.48508 * 109.47191 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47334 * 119.99968 * 15 13 11 18 18 H 1.48507 * 109.46927 * 240.00155 * 15 13 11 19 19 C 1.46926 * 118.73306 * 306.64287 * 10 9 8 20 20 C 1.52762 * 109.01244 * 53.31086 * 19 10 9 21 21 H 1.08999 * 109.46914 * 270.12647 * 1 2 3 22 22 H 1.08997 * 109.47049 * 30.11895 * 1 2 3 23 23 H 1.08994 * 109.47148 * 150.12181 * 1 2 3 24 24 H 1.08003 * 125.65056 * 0.07107 * 3 2 1 25 25 H 1.07994 * 125.99565 * 180.02562 * 5 4 3 26 26 H 1.08990 * 109.46339 * 155.00017 * 7 6 5 27 27 H 1.09002 * 109.49413 * 58.68080 * 8 7 6 28 28 H 1.09002 * 109.52526 * 298.59884 * 8 7 6 29 29 H 1.08999 * 109.58604 * 294.84397 * 9 8 7 30 30 H 1.09002 * 109.70225 * 174.49502 * 9 8 7 31 31 H 0.97000 * 120.00039 * 353.97832 * 14 13 11 32 32 H 1.09007 * 109.58504 * 173.14238 * 19 10 9 33 33 H 1.09001 * 109.58989 * 293.56509 * 19 10 9 34 34 H 1.08999 * 109.56431 * 185.55424 * 20 19 10 35 35 H 1.08994 * 109.35894 * 65.49636 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0059 5 6 3.5461 -0.6506 -0.0046 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5429 0.0048 8 6 2.8210 -3.3756 0.8288 9 6 2.3510 -4.8334 0.8580 10 7 2.1738 -5.3010 -0.5235 11 6 2.7947 -6.4410 -0.9593 12 1 3.7216 -6.7586 -0.5049 13 6 2.2327 -7.1887 -1.9850 14 7 0.9379 -7.1252 -2.2124 15 14 3.3153 -8.2790 -3.0474 16 1 4.7253 -8.1685 -2.5945 17 1 2.8658 -9.6893 -2.9286 18 1 3.2156 -7.8453 -4.4643 19 6 1.3227 -4.5187 -1.4303 20 6 1.7997 -3.0675 -1.4324 21 1 -0.3633 0.0023 1.0277 22 1 -0.3633 0.8889 -0.5157 23 1 -0.3633 -0.8910 -0.5119 24 1 1.9335 2.1144 0.0011 25 1 4.4368 -1.2612 -0.0080 26 1 0.8415 -2.6173 0.4439 27 1 2.8640 -2.9867 1.8461 28 1 3.8113 -3.3217 0.3765 29 1 1.4028 -4.9009 1.3912 30 1 3.0969 -5.4500 1.3596 31 1 0.3637 -6.6259 -1.6108 32 1 1.3921 -4.9262 -2.4389 33 1 0.2887 -4.5601 -1.0876 34 1 1.1158 -2.4593 -2.0244 35 1 2.7993 -3.0164 -1.8639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473895388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = 72.559612 kcal Electronic energy + Delta-G solvation = -16926.356947 eV Core-core repulsion = 14346.623729 eV Total energy + Delta-G solvation = -2579.733218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98095 -37.74605 -34.04697 -33.70597 -30.98033 -30.04006 -28.18373 -26.94303 -24.96253 -22.51691 -22.37736 -21.16233 -19.85467 -18.84159 -17.40539 -16.92452 -15.61062 -14.60895 -14.55343 -14.15908 -13.60067 -13.50024 -13.35128 -13.29177 -12.98506 -12.70598 -12.69275 -12.21040 -11.64632 -11.11056 -10.68528 -10.61496 -10.37142 -10.13901 -9.99459 -9.94611 -9.72153 -9.43263 -9.28706 -8.37868 -8.09521 -6.89392 -6.06708 -3.23042 2.19193 2.86804 3.33720 3.52087 3.54709 3.68422 4.59888 4.65927 4.78227 4.80613 5.00890 5.14262 5.27808 5.30493 5.46986 5.51049 5.59190 5.76107 5.92161 5.98383 6.16246 6.27827 6.35943 6.48203 6.52999 6.61774 6.70869 6.82293 6.93125 7.07653 7.17474 7.31387 8.02027 8.21720 8.57839 9.11772 9.84828 10.29213 11.21714 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042984 B = 0.006187 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.249840 B = 4524.868856 C = 4648.565481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.462 5.462 3 C 0.163 3.837 4 N -0.495 5.495 5 C -0.031 4.031 6 C 0.000 4.000 7 C -0.004 4.004 8 C -0.120 4.120 9 C 0.148 3.852 10 N -0.599 5.599 11 C -0.347 4.347 12 H 0.057 0.943 13 C -0.025 4.025 14 N -0.919 5.919 15 Si 1.068 2.932 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.290 1.290 19 C 0.151 3.849 20 C -0.123 4.123 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.200 0.800 25 H 0.167 0.833 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.081 0.919 33 H 0.014 0.986 34 H 0.046 0.954 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 13.119 4.481 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.146 5.146 3 C -0.118 4.118 4 N -0.213 5.213 5 C -0.178 4.178 6 C -0.115 4.115 7 C -0.024 4.024 8 C -0.159 4.159 9 C 0.021 3.979 10 N -0.323 5.323 11 C -0.476 4.476 12 H 0.075 0.925 13 C -0.227 4.227 14 N -0.559 5.559 15 Si 0.898 3.102 16 H -0.218 1.218 17 H -0.221 1.221 18 H -0.217 1.217 19 C 0.025 3.975 20 C -0.163 4.163 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.217 0.783 25 H 0.184 0.816 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.378 12.612 3.151 13.072 hybrid contribution -0.839 0.679 1.386 1.757 sum -2.217 13.291 4.538 14.218 Atomic orbital electron populations 1.22010 0.77034 1.04671 1.03403 1.45299 1.07418 1.06863 1.55027 1.24793 0.85877 0.93239 1.07937 1.70222 1.19401 1.12305 1.19421 1.22009 0.96041 0.90648 1.09135 1.21641 0.91165 0.89915 1.08771 1.19567 0.99139 0.85667 0.98033 1.22017 0.98810 0.97092 0.98001 1.20904 0.97658 0.91781 0.87526 1.44120 1.57173 1.25731 1.05273 1.20039 1.03913 1.01843 1.21817 0.92520 1.25839 0.97508 0.98765 1.00550 1.70728 1.02947 1.40842 1.41403 0.83492 0.74529 0.75775 0.76403 1.21772 1.22131 1.21681 1.20866 0.92038 0.87953 0.96620 1.22062 1.01743 0.98763 0.93703 0.90727 0.89625 0.89442 0.78342 0.81610 0.91602 0.92806 0.91570 0.96748 0.92336 0.92065 0.90045 0.96774 0.93558 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.83 59.85 0.65 1.29 16 2 N -0.46 -6.05 3.15 -121.36 -0.38 -6.43 16 3 C 0.16 2.14 12.56 -90.38 -1.14 1.00 16 4 N -0.50 -8.14 11.25 -14.67 -0.16 -8.30 16 5 C -0.03 -0.52 11.07 -17.81 -0.20 -0.72 16 6 C 0.00 -0.01 5.87 -81.60 -0.48 -0.48 16 7 C 0.00 -0.07 2.23 -91.73 -0.20 -0.27 16 8 C -0.12 -2.08 4.93 -26.61 -0.13 -2.21 16 9 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 10 N -0.60 -14.81 2.86 -172.58 -0.49 -15.30 16 11 C -0.35 -9.63 9.49 -15.06 -0.14 -9.77 16 12 H 0.06 1.59 7.94 -52.49 -0.42 1.17 16 13 C -0.02 -0.70 4.69 -17.43 -0.08 -0.79 16 14 N -0.92 -27.32 12.40 55.49 0.69 -26.63 16 15 Si 1.07 25.30 29.99 -169.99 -5.10 20.20 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.15 3.47 4.66 -3.93 -0.02 3.45 16 20 C -0.12 -2.31 5.33 -26.83 -0.14 -2.45 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 24 H 0.20 1.75 8.06 -52.48 -0.42 1.32 16 25 H 0.17 2.65 7.44 -52.49 -0.39 2.26 16 26 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.19 7.39 -51.93 -0.38 0.81 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.27 8.01 6.71 -40.82 -0.27 7.74 16 32 H 0.08 2.12 6.30 -51.92 -0.33 1.79 16 33 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -32.30 282.97 -8.26 -40.56 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.16 Total: -0.44 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.91 Total: -7.92 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.35 Total: -56.67 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.20 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.30 -8.26 -40.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473895388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.121 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds