Wall clock time and date at job start Sun Mar 29 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35041 * 126.39693 * 2 1 4 4 N 1.30498 * 108.69589 * 180.27135 * 3 2 1 5 5 C 1.34127 * 109.26114 * 359.76476 * 4 3 2 6 6 C 1.34675 * 108.01595 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.59106 * 179.97438 * 6 5 4 8 8 C 1.53042 * 109.46020 * 35.01904 * 7 6 5 9 9 C 1.53190 * 109.31004 * 178.63185 * 8 7 6 10 10 N 1.46923 * 108.77961 * 54.63924 * 9 8 7 11 11 C 1.36935 * 120.63374 * 126.36332 * 10 9 8 12 12 H 1.07998 * 119.99964 * 332.39418 * 11 10 9 13 13 C 1.38818 * 119.99962 * 152.38709 * 11 10 9 14 14 N 1.31621 * 119.99780 * 335.26864 * 13 11 10 15 15 Si 1.86796 * 119.99944 * 154.99519 * 13 11 10 16 16 H 1.48508 * 109.47191 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47334 * 119.99968 * 15 13 11 18 18 H 1.48507 * 109.46927 * 240.00155 * 15 13 11 19 19 C 1.46926 * 118.73306 * 306.64287 * 10 9 8 20 20 C 1.52762 * 109.01244 * 53.31086 * 19 10 9 21 21 H 1.08999 * 109.46914 * 270.12647 * 1 2 3 22 22 H 1.08997 * 109.47049 * 30.11895 * 1 2 3 23 23 H 1.08994 * 109.47148 * 150.12181 * 1 2 3 24 24 H 1.08003 * 125.65056 * 0.07107 * 3 2 1 25 25 H 1.07994 * 125.99565 * 180.02562 * 5 4 3 26 26 H 1.08990 * 109.46339 * 155.00017 * 7 6 5 27 27 H 1.09002 * 109.49413 * 58.68080 * 8 7 6 28 28 H 1.09002 * 109.52526 * 298.59884 * 8 7 6 29 29 H 1.08999 * 109.58604 * 294.84397 * 9 8 7 30 30 H 1.09002 * 109.70225 * 174.49502 * 9 8 7 31 31 H 0.97000 * 120.00039 * 353.97832 * 14 13 11 32 32 H 1.09007 * 109.58504 * 173.14238 * 19 10 9 33 33 H 1.09001 * 109.58989 * 293.56509 * 19 10 9 34 34 H 1.08999 * 109.56431 * 185.55424 * 20 19 10 35 35 H 1.08994 * 109.35894 * 65.49636 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 -0.0059 5 6 3.5461 -0.6506 -0.0046 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5429 0.0048 8 6 2.8210 -3.3756 0.8288 9 6 2.3510 -4.8334 0.8580 10 7 2.1738 -5.3010 -0.5235 11 6 2.7947 -6.4410 -0.9593 12 1 3.7216 -6.7586 -0.5049 13 6 2.2327 -7.1887 -1.9850 14 7 0.9379 -7.1252 -2.2124 15 14 3.3153 -8.2790 -3.0474 16 1 4.7253 -8.1685 -2.5945 17 1 2.8658 -9.6893 -2.9286 18 1 3.2156 -7.8453 -4.4643 19 6 1.3227 -4.5187 -1.4303 20 6 1.7997 -3.0675 -1.4324 21 1 -0.3633 0.0023 1.0277 22 1 -0.3633 0.8889 -0.5157 23 1 -0.3633 -0.8910 -0.5119 24 1 1.9335 2.1144 0.0011 25 1 4.4368 -1.2612 -0.0080 26 1 0.8415 -2.6173 0.4439 27 1 2.8640 -2.9867 1.8461 28 1 3.8113 -3.3217 0.3765 29 1 1.4028 -4.9009 1.3912 30 1 3.0969 -5.4500 1.3596 31 1 0.3637 -6.6259 -1.6108 32 1 1.3921 -4.9262 -2.4389 33 1 0.2887 -4.5601 -1.0876 34 1 1.1158 -2.4593 -2.0244 35 1 2.7993 -3.0164 -1.8639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473895388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:14 Heat of formation + Delta-G solvation = 54.070806 kcal Electronic energy + Delta-G solvation = -16927.158682 eV Core-core repulsion = 14346.623729 eV Total energy + Delta-G solvation = -2580.534953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.07123 -39.41588 -35.67297 -34.86376 -32.76972 -31.72324 -29.61847 -27.77944 -26.78384 -24.18038 -23.99017 -22.39695 -21.18052 -20.34373 -19.33274 -17.98993 -16.60622 -16.35056 -16.00948 -15.71887 -15.38539 -15.12031 -14.81249 -14.51905 -14.23924 -13.88172 -13.71135 -13.50477 -13.35956 -12.87172 -12.54449 -12.21085 -12.02413 -11.89814 -11.77999 -11.53347 -11.21453 -10.89850 -10.48261 -10.44793 -9.28078 -8.94317 -8.24753 -5.39839 1.10090 1.58885 1.66155 1.82728 1.93328 2.19735 2.65271 3.20790 3.49467 3.64521 3.80751 3.90169 4.00937 4.02636 4.32476 4.35306 4.41790 4.43425 4.54036 4.65794 4.68582 4.76230 4.85846 4.99792 5.06286 5.08680 5.18546 5.21359 5.33366 5.57512 5.76757 5.85254 6.35394 6.40207 7.06465 7.12620 7.77953 8.22011 9.00452 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042984 B = 0.006187 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.249840 B = 4524.868856 C = 4648.565481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.461 5.461 3 C 0.180 3.820 4 N -0.535 5.535 5 C -0.049 4.049 6 C -0.012 4.012 7 C 0.009 3.991 8 C -0.107 4.107 9 C 0.144 3.856 10 N -0.618 5.618 11 C -0.354 4.354 12 H 0.049 0.951 13 C -0.075 4.075 14 N -0.944 5.944 15 Si 1.115 2.885 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.288 1.288 19 C 0.159 3.841 20 C -0.108 4.108 21 H 0.091 0.909 22 H 0.118 0.882 23 H 0.080 0.920 24 H 0.244 0.756 25 H 0.159 0.841 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.052 0.948 31 H 0.255 0.745 32 H 0.044 0.956 33 H 0.010 0.990 34 H 0.064 0.936 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 15.004 4.959 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.143 5.143 3 C -0.102 4.102 4 N -0.254 5.254 5 C -0.196 4.196 6 C -0.128 4.128 7 C -0.011 4.011 8 C -0.146 4.146 9 C 0.019 3.981 10 N -0.343 5.343 11 C -0.483 4.483 12 H 0.067 0.933 13 C -0.271 4.271 14 N -0.586 5.586 15 Si 0.940 3.060 16 H -0.200 1.200 17 H -0.216 1.216 18 H -0.214 1.214 19 C 0.033 3.967 20 C -0.147 4.147 21 H 0.110 0.890 22 H 0.136 0.864 23 H 0.099 0.901 24 H 0.260 0.740 25 H 0.176 0.824 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.791 14.517 3.658 15.078 hybrid contribution -0.754 0.174 1.300 1.513 sum -2.545 14.692 4.958 15.713 Atomic orbital electron populations 1.22346 0.74414 1.06015 1.04974 1.45516 1.08965 1.05894 1.53922 1.25647 0.84971 0.94787 1.04765 1.70204 1.21578 1.12101 1.21486 1.22064 0.96416 0.91226 1.09866 1.21255 0.91358 0.89889 1.10252 1.19309 0.99359 0.86397 0.95996 1.21846 0.98364 0.94867 0.99573 1.21045 0.97820 0.93768 0.85488 1.44364 1.57280 1.25451 1.07223 1.20267 1.03630 1.02643 1.21805 0.93279 1.27124 0.97868 1.00172 1.01923 1.70842 1.03725 1.42282 1.41732 0.82852 0.73835 0.74346 0.74922 1.20026 1.21645 1.21426 1.20712 0.91740 0.90014 0.94254 1.21837 1.00868 0.96182 0.95860 0.89042 0.86374 0.90116 0.74019 0.82371 0.90579 0.90395 0.92515 0.96200 0.92896 0.93489 0.93750 0.97224 0.91719 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.83 127.77 1.38 2.26 16 2 N -0.46 -10.51 3.15 -537.88 -1.70 -12.20 16 3 C 0.18 4.10 12.56 180.26 2.26 6.36 16 4 N -0.53 -16.54 11.25 -200.31 -2.25 -18.80 16 5 C -0.05 -1.57 11.07 83.52 0.92 -0.65 16 6 C -0.01 -0.35 5.87 40.95 0.24 -0.11 16 7 C 0.01 0.29 2.23 -11.51 -0.03 0.27 16 8 C -0.11 -3.61 4.93 30.67 0.15 -3.46 16 9 C 0.14 5.93 6.52 86.36 0.56 6.50 16 10 N -0.62 -31.04 2.86 -699.92 -2.00 -33.04 16 11 C -0.35 -19.97 9.49 84.04 0.80 -19.18 16 12 H 0.05 2.79 7.94 -2.91 -0.02 2.77 16 13 C -0.07 -4.27 4.69 84.86 0.40 -3.87 16 14 N -0.94 -57.43 12.40 21.65 0.27 -57.16 16 15 Si 1.12 51.54 29.99 68.60 2.06 53.59 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 C 0.16 7.40 4.66 86.22 0.40 7.80 16 20 C -0.11 -4.01 5.33 30.53 0.16 -3.85 16 21 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.08 1.26 7.69 -2.39 -0.02 1.24 16 24 H 0.24 3.01 8.06 -2.91 -0.02 2.99 16 25 H 0.16 5.09 7.44 -2.91 -0.02 5.07 16 26 H 0.08 2.27 7.65 -2.39 -0.02 2.26 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.03 7.39 -2.39 -0.02 2.01 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 31 H 0.26 15.73 6.71 -92.71 -0.62 15.11 16 32 H 0.04 2.38 6.30 -2.38 -0.02 2.37 16 33 H 0.01 0.46 7.87 -2.39 -0.02 0.44 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -70.95 282.97 4.85 -66.10 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.21 Total: 9.43 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 7.26 Total: -7.92 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -5.68 Total: -121.20 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.06 Total: 53.59 kcal Total: -70.95 4.85 -66.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473895388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.175 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds