Wall clock time and date at job start Sun Mar 29 2020 22:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00215 * 2 1 4 4 C 1.39004 * 119.99688 * 179.97438 * 2 1 3 5 5 C 1.39136 * 119.70523 * 10.59989 * 4 2 1 6 6 C 1.38296 * 119.09598 * 180.02562 * 5 4 2 7 7 C 1.38884 * 118.50657 * 359.97438 * 6 5 4 8 8 C 1.38020 * 119.32763 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.56878 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47208 * 94.99748 * 9 8 7 11 11 C 1.46497 * 120.00532 * 89.99957 * 10 9 8 12 12 C 1.36939 * 119.99928 * 269.99942 * 10 9 8 13 13 H 1.07999 * 120.00126 * 21.01435 * 12 10 9 14 14 C 1.38820 * 120.00152 * 201.02191 * 12 10 9 15 15 N 1.31612 * 119.99955 * 16.10544 * 14 12 10 16 16 Si 1.86798 * 119.99900 * 196.11044 * 14 12 10 17 17 H 1.48498 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47002 * 119.99891 * 16 14 12 19 19 H 1.48501 * 109.46966 * 239.99706 * 16 14 12 20 20 N 1.31964 * 120.85995 * 0.24305 * 8 7 6 21 21 H 1.08995 * 109.47772 * 185.26005 * 1 2 3 22 22 H 1.09003 * 109.47173 * 305.26565 * 1 2 3 23 23 H 1.09000 * 109.46762 * 65.25520 * 1 2 3 24 24 H 1.08997 * 109.46921 * 269.99655 * 3 2 1 25 25 H 1.08999 * 109.47083 * 30.00129 * 3 2 1 26 26 H 1.09004 * 109.46950 * 150.00021 * 3 2 1 27 27 H 1.07999 * 120.45573 * 0.04094 * 5 4 2 28 28 H 1.08002 * 120.75033 * 179.97438 * 6 5 4 29 29 H 1.08008 * 120.33608 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47538 * 334.99509 * 9 8 7 31 31 H 1.08994 * 109.47165 * 214.99341 * 9 8 7 32 32 H 1.08998 * 109.47510 * 92.11522 * 11 10 9 33 33 H 1.08995 * 109.47353 * 212.11709 * 11 10 9 34 34 H 1.09010 * 109.46844 * 332.11499 * 11 10 9 35 35 H 0.96999 * 120.00410 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2039 0.0005 5 6 1.4759 -2.3950 -0.2212 6 6 2.1797 -3.5854 -0.2175 7 6 3.5495 -3.5449 0.0083 8 6 4.1638 -2.3275 0.2212 9 6 5.6497 -2.2772 0.4673 10 7 6.3452 -2.0156 -0.7953 11 6 6.6152 -0.6370 -1.2109 12 6 6.7431 -3.0597 -1.5870 13 1 6.2734 -4.0265 -1.4820 14 6 7.7504 -2.8755 -2.5243 15 7 8.5352 -1.8217 -2.4485 16 14 7.9917 -4.1233 -3.8933 17 1 6.9875 -5.2086 -3.7565 18 1 7.8223 -3.4543 -5.2083 19 1 9.3576 -4.6990 -3.8031 20 7 3.4661 -1.2073 0.2173 21 1 -0.3634 -1.0232 0.0942 22 1 -0.3634 0.5934 0.8391 23 1 -0.3633 0.4302 -0.9333 24 1 2.3792 1.5833 -1.0276 25 1 1.6085 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 0.4098 -2.3900 -0.3942 28 1 1.6755 -4.5255 -0.3863 29 1 4.1281 -4.4569 0.0171 30 1 5.9831 -3.2317 0.8747 31 1 5.8737 -1.4811 1.1772 32 1 7.6005 -0.3364 -0.8548 33 1 6.5870 -0.5733 -2.2987 34 1 5.8587 0.0246 -0.7885 35 1 9.2388 -1.6927 -3.1036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559522737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:59 Heat of formation + Delta-G solvation = 78.833337 kcal Electronic energy + Delta-G solvation = -16619.785406 eV Core-core repulsion = 14040.324237 eV Total energy + Delta-G solvation = -2579.461169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80458 -36.54901 -35.14088 -32.17760 -31.33037 -29.83312 -28.18023 -26.21541 -25.60671 -24.81207 -22.18391 -21.22687 -20.19495 -16.98524 -16.68641 -15.87046 -15.24373 -15.13450 -14.78618 -14.11928 -13.80895 -13.58796 -13.13790 -12.70948 -12.57547 -12.40555 -12.21218 -11.83649 -11.53740 -11.25331 -10.95957 -10.82803 -10.62391 -10.28044 -9.93517 -9.84330 -9.62110 -9.05339 -8.80456 -8.46760 -7.18492 -6.71564 -5.68453 -3.11468 1.82636 2.00182 3.19887 3.41264 3.48529 3.50850 4.39667 4.61127 4.84062 5.13414 5.31401 5.34381 5.44266 5.46549 5.53520 5.70608 5.71508 5.80271 5.84031 5.87573 6.11363 6.31081 6.36083 6.61288 6.70783 6.82214 6.99121 7.08881 7.30148 7.49676 7.73129 7.78295 7.87737 8.43028 8.78484 9.28138 9.91487 10.40672 11.37277 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.006827 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.177356 B = 4100.348184 C = 4463.507843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.627 5.627 3 C 0.103 3.897 4 C 0.394 3.606 5 C -0.260 4.260 6 C -0.041 4.041 7 C -0.218 4.218 8 C 0.180 3.820 9 C 0.193 3.807 10 N -0.587 5.587 11 C 0.165 3.835 12 C -0.255 4.255 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.290 1.290 20 N -0.530 5.530 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.041 0.959 34 H 0.007 0.993 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 1.922 5.664 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.343 5.343 3 C -0.041 4.041 4 C 0.161 3.839 5 C -0.285 4.285 6 C -0.067 4.067 7 C -0.240 4.240 8 C 0.038 3.962 9 C 0.064 3.936 10 N -0.309 5.309 11 C 0.020 3.980 12 C -0.384 4.384 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.549 5.549 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.217 1.217 20 N -0.247 5.247 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.250 2.934 5.689 15.622 hybrid contribution -0.418 -1.375 -1.197 1.870 sum -14.668 1.559 4.492 15.420 Atomic orbital electron populations 1.21627 0.79344 1.02790 1.00747 1.46034 1.04508 1.03212 1.80558 1.21470 0.97751 0.83842 1.00990 1.18366 0.89060 0.85402 0.91088 1.21229 1.00466 0.92499 1.14262 1.21214 0.94213 0.97186 0.94084 1.21693 0.94734 0.99467 1.08145 1.22608 0.98112 0.86723 0.88763 1.19738 0.84127 1.00213 0.89523 1.43837 1.64292 1.03396 1.19328 1.20770 0.95887 0.82851 0.98491 1.19250 1.13740 0.91636 1.13771 0.91271 1.24932 0.96098 0.97871 1.00716 1.70119 1.19278 1.29566 1.35976 0.86232 0.77470 0.80736 0.82417 1.20307 1.21696 1.21738 1.67059 1.05521 1.31844 1.20317 0.90578 0.92781 0.93162 0.93926 0.92627 0.89980 0.86033 0.85887 0.85544 0.91544 0.92763 0.95631 0.94001 0.97492 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 10.54 59.85 0.63 1.64 16 2 N -0.63 -9.15 3.39 -189.67 -0.64 -9.80 16 3 C 0.10 1.39 10.59 59.85 0.63 2.02 16 4 C 0.39 6.94 7.33 -155.02 -1.14 5.80 16 5 C -0.26 -4.07 9.24 -39.23 -0.36 -4.43 16 6 C -0.04 -0.65 10.17 -39.32 -0.40 -1.05 16 7 C -0.22 -4.00 9.71 -39.42 -0.38 -4.39 16 8 C 0.18 3.69 6.36 -82.61 -0.53 3.16 16 9 C 0.19 4.22 5.96 -5.19 -0.03 4.19 16 10 N -0.59 -15.40 2.91 -182.50 -0.53 -15.93 16 11 C 0.16 4.31 8.99 59.85 0.54 4.85 16 12 C -0.25 -7.14 9.66 -15.06 -0.15 -7.29 16 13 H 0.07 1.89 7.88 -52.49 -0.41 1.47 16 14 C 0.00 0.06 5.01 -17.43 -0.09 -0.03 16 15 N -0.90 -27.02 10.79 55.49 0.60 -26.42 16 16 Si 0.90 22.31 29.58 -169.99 -5.03 17.28 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 N -0.53 -10.67 8.99 -8.67 -0.08 -10.75 16 21 H 0.08 0.72 5.49 -51.93 -0.29 0.43 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.58 8.07 -51.93 -0.42 0.16 16 26 H 0.08 1.27 7.24 -51.93 -0.38 0.89 16 27 H 0.12 1.53 5.96 -52.49 -0.31 1.22 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 29 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 31 H 0.05 1.14 8.07 -51.93 -0.42 0.72 16 32 H 0.03 0.70 7.56 -51.93 -0.39 0.31 16 33 H 0.04 1.18 7.09 -51.93 -0.37 0.81 16 34 H 0.01 0.16 8.06 -51.92 -0.42 -0.26 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -32.27 292.75 -7.60 -39.88 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.07 Total: -3.15 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.27 Total: 4.48 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.65 Total: -62.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.27 -7.60 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.711 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds