Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00215 * 2 1 4 4 C 1.39004 * 119.99688 * 179.97438 * 2 1 3 5 5 C 1.39136 * 119.70523 * 10.59989 * 4 2 1 6 6 C 1.38296 * 119.09598 * 180.02562 * 5 4 2 7 7 C 1.38884 * 118.50657 * 359.97438 * 6 5 4 8 8 C 1.38020 * 119.32763 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.56878 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47208 * 94.99748 * 9 8 7 11 11 C 1.46497 * 120.00532 * 89.99957 * 10 9 8 12 12 C 1.36939 * 119.99928 * 269.99942 * 10 9 8 13 13 H 1.07999 * 120.00126 * 21.01435 * 12 10 9 14 14 C 1.38820 * 120.00152 * 201.02191 * 12 10 9 15 15 N 1.31612 * 119.99955 * 16.10544 * 14 12 10 16 16 Si 1.86798 * 119.99900 * 196.11044 * 14 12 10 17 17 H 1.48498 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47002 * 119.99891 * 16 14 12 19 19 H 1.48501 * 109.46966 * 239.99706 * 16 14 12 20 20 N 1.31964 * 120.85995 * 0.24305 * 8 7 6 21 21 H 1.08995 * 109.47772 * 185.26005 * 1 2 3 22 22 H 1.09003 * 109.47173 * 305.26565 * 1 2 3 23 23 H 1.09000 * 109.46762 * 65.25520 * 1 2 3 24 24 H 1.08997 * 109.46921 * 269.99655 * 3 2 1 25 25 H 1.08999 * 109.47083 * 30.00129 * 3 2 1 26 26 H 1.09004 * 109.46950 * 150.00021 * 3 2 1 27 27 H 1.07999 * 120.45573 * 0.04094 * 5 4 2 28 28 H 1.08002 * 120.75033 * 179.97438 * 6 5 4 29 29 H 1.08008 * 120.33608 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47538 * 334.99509 * 9 8 7 31 31 H 1.08994 * 109.47165 * 214.99341 * 9 8 7 32 32 H 1.08998 * 109.47510 * 92.11522 * 11 10 9 33 33 H 1.08995 * 109.47353 * 212.11709 * 11 10 9 34 34 H 1.09010 * 109.46844 * 332.11499 * 11 10 9 35 35 H 0.96999 * 120.00410 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2039 0.0005 5 6 1.4759 -2.3950 -0.2212 6 6 2.1797 -3.5854 -0.2175 7 6 3.5495 -3.5449 0.0083 8 6 4.1638 -2.3275 0.2212 9 6 5.6497 -2.2772 0.4673 10 7 6.3452 -2.0156 -0.7953 11 6 6.6152 -0.6370 -1.2109 12 6 6.7431 -3.0597 -1.5870 13 1 6.2734 -4.0265 -1.4820 14 6 7.7504 -2.8755 -2.5243 15 7 8.5352 -1.8217 -2.4485 16 14 7.9917 -4.1233 -3.8933 17 1 6.9875 -5.2086 -3.7565 18 1 7.8223 -3.4543 -5.2083 19 1 9.3576 -4.6990 -3.8031 20 7 3.4661 -1.2073 0.2173 21 1 -0.3634 -1.0232 0.0942 22 1 -0.3634 0.5934 0.8391 23 1 -0.3633 0.4302 -0.9333 24 1 2.3792 1.5833 -1.0276 25 1 1.6085 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 0.4098 -2.3900 -0.3942 28 1 1.6755 -4.5255 -0.3863 29 1 4.1281 -4.4569 0.0171 30 1 5.9831 -3.2317 0.8747 31 1 5.8737 -1.4811 1.1772 32 1 7.6005 -0.3364 -0.8548 33 1 6.5870 -0.5733 -2.2987 34 1 5.8587 0.0246 -0.7885 35 1 9.2388 -1.6927 -3.1036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559522737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = 59.476428 kcal Electronic energy + Delta-G solvation = -16620.624785 eV Core-core repulsion = 14040.324237 eV Total energy + Delta-G solvation = -2580.300548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12578 -37.95773 -36.85328 -33.78765 -32.97702 -31.40349 -29.24357 -28.02502 -27.51975 -25.99795 -23.91326 -22.60689 -21.74251 -18.75858 -18.12540 -17.27757 -16.91957 -16.47819 -16.12731 -15.53392 -15.38661 -15.22325 -14.90699 -14.14618 -14.01467 -13.60468 -13.33495 -13.19889 -12.90221 -12.86386 -12.77997 -12.56314 -12.37226 -12.25561 -11.96252 -11.88220 -10.87874 -10.68949 -10.36688 -10.16941 -8.83777 -8.36564 -7.83397 -5.29595 0.46879 0.69748 1.45811 1.47261 1.58132 2.13226 2.51095 3.05823 3.30250 3.63891 3.88446 4.06172 4.17483 4.33561 4.40855 4.51414 4.56829 4.60487 4.75916 4.81056 4.88381 4.89073 4.94001 5.01315 5.04712 5.27933 5.33746 5.50817 5.59917 5.67467 5.80094 6.19366 6.30424 6.50180 7.12849 7.43421 7.83422 8.30345 9.21634 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.006827 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.177356 B = 4100.348184 C = 4463.507843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.630 5.630 3 C 0.102 3.898 4 C 0.376 3.624 5 C -0.251 4.251 6 C -0.036 4.036 7 C -0.233 4.233 8 C 0.154 3.846 9 C 0.195 3.805 10 N -0.604 5.604 11 C 0.187 3.813 12 C -0.258 4.258 13 H 0.076 0.924 14 C -0.055 4.055 15 N -0.940 5.940 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.295 1.295 19 H -0.289 1.289 20 N -0.560 5.560 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.003 0.997 33 H 0.013 0.987 34 H 0.022 0.978 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.639 0.949 5.562 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.346 5.346 3 C -0.041 4.041 4 C 0.141 3.859 5 C -0.276 4.276 6 C -0.061 4.061 7 C -0.256 4.256 8 C 0.014 3.986 9 C 0.068 3.932 10 N -0.326 5.326 11 C 0.042 3.958 12 C -0.388 4.388 13 H 0.093 0.907 14 C -0.250 4.250 15 N -0.587 5.587 16 Si 0.796 3.204 17 H -0.188 1.188 18 H -0.222 1.222 19 H -0.216 1.216 20 N -0.279 5.279 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.172 1.959 5.621 18.175 hybrid contribution 0.317 -1.004 -1.071 1.502 sum -16.855 0.955 4.550 17.484 Atomic orbital electron populations 1.21905 0.76557 1.04100 1.02390 1.46385 1.06202 1.02415 1.79639 1.21474 0.97383 0.84535 1.00691 1.18807 0.88579 0.87367 0.91131 1.21663 1.02216 0.91543 1.12127 1.21631 0.93101 0.99002 0.92404 1.21804 0.96320 0.98667 1.08817 1.22127 0.97134 0.88030 0.91296 1.19772 0.85357 1.00367 0.87746 1.44014 1.65190 1.02758 1.20669 1.20406 0.95130 0.83785 0.96476 1.19586 1.13180 0.92242 1.13826 0.90667 1.25751 0.96174 1.00007 1.03074 1.70271 1.20039 1.31601 1.36762 0.85190 0.77525 0.78714 0.78965 1.18809 1.22173 1.21582 1.66929 1.07272 1.32037 1.21642 0.89510 0.90719 0.91763 0.94552 0.89229 0.92641 0.82389 0.82065 0.85257 0.90906 0.92911 0.97835 0.96821 0.95985 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.54 127.77 1.35 2.87 16 2 N -0.63 -16.94 3.39 -753.98 -2.56 -19.49 16 3 C 0.10 2.64 10.59 127.77 1.35 3.99 16 4 C 0.38 12.55 7.33 133.06 0.98 13.53 16 5 C -0.25 -7.01 9.24 22.50 0.21 -6.80 16 6 C -0.04 -1.02 10.17 22.44 0.23 -0.79 16 7 C -0.23 -8.27 9.71 22.37 0.22 -8.05 16 8 C 0.15 6.32 6.36 42.49 0.27 6.59 16 9 C 0.19 8.69 5.96 85.63 0.51 9.20 16 10 N -0.60 -32.36 2.91 -731.31 -2.13 -34.49 16 11 C 0.19 10.18 8.99 127.77 1.15 11.33 16 12 C -0.26 -14.64 9.66 84.03 0.81 -13.83 16 13 H 0.08 4.08 7.88 -2.91 -0.02 4.06 16 14 C -0.06 -3.21 5.01 84.87 0.43 -2.78 16 15 N -0.94 -57.68 10.79 21.65 0.23 -57.45 16 16 Si 0.97 46.24 29.58 68.60 2.03 48.27 16 17 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 N -0.56 -22.44 8.99 -181.34 -1.63 -24.07 16 21 H 0.09 1.23 5.49 -2.39 -0.01 1.22 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 26 H 0.05 1.72 7.24 -2.39 -0.02 1.71 16 27 H 0.16 3.17 5.96 -2.91 -0.02 3.15 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.07 3.06 7.94 -2.39 -0.02 3.04 16 31 H 0.05 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.00 0.20 7.56 -2.39 -0.02 0.18 16 33 H 0.01 0.77 7.09 -2.39 -0.02 0.76 16 34 H 0.02 1.09 8.06 -2.38 -0.02 1.07 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -70.60 292.75 4.51 -66.09 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.06 Total: 5.87 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 7.49 Total: 15.27 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -6.08 Total: -135.50 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.60 4.51 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.571 kcal (2) G-P(sol) polarization free energy of solvation -70.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds