Wall clock time and date at job start Sun Mar 29 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46913 * 2 1 4 4 C 1.35042 * 126.39743 * 265.58716 * 3 2 1 5 5 N 1.30493 * 108.70103 * 179.97438 * 4 3 2 6 6 C 1.34130 * 109.25912 * 0.02562 * 5 4 3 7 7 C 1.34674 * 108.01708 * 359.97438 * 6 5 4 8 8 C 1.50692 * 126.59216 * 179.97438 * 7 6 5 9 9 N 1.46510 * 109.46922 * 265.10467 * 8 7 6 10 10 C 1.36939 * 119.99520 * 90.12939 * 9 8 7 11 11 H 1.07999 * 119.99301 * 217.89294 * 10 9 8 12 12 C 1.38811 * 120.00328 * 37.88874 * 10 9 8 13 13 N 1.31616 * 119.99798 * 20.72634 * 12 10 9 14 14 Si 1.86804 * 120.00060 * 200.71982 * 12 10 9 15 15 H 1.48503 * 109.46977 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47210 * 120.00074 * 14 12 10 17 17 H 1.48502 * 109.47058 * 240.00340 * 14 12 10 18 18 C 1.46496 * 120.00208 * 270.12577 * 9 8 7 19 19 C 1.52999 * 117.49909 * 191.02693 * 18 9 8 20 20 C 1.52998 * 117.49575 * 122.40382 * 18 9 8 21 21 H 1.08995 * 109.46754 * 304.80206 * 1 2 3 22 22 H 1.08994 * 109.46952 * 64.80106 * 1 2 3 23 23 H 1.08996 * 109.47120 * 184.80435 * 1 2 3 24 24 H 1.08998 * 109.46743 * 240.00112 * 2 1 3 25 25 H 1.09001 * 109.47254 * 120.00372 * 2 1 3 26 26 H 1.08004 * 125.64999 * 359.71804 * 4 3 2 27 27 H 1.07994 * 125.99200 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47639 * 25.10269 * 8 7 6 29 29 H 1.09002 * 109.47709 * 145.11069 * 8 7 6 30 30 H 0.97002 * 119.99507 * 184.93575 * 13 12 10 31 31 H 1.09000 * 115.54724 * 336.73606 * 18 9 8 32 32 H 1.09007 * 117.49756 * 0.02562 * 19 18 9 33 33 H 1.08991 * 117.49775 * 145.02175 * 19 18 9 34 34 H 1.09006 * 117.49889 * 214.97844 * 20 18 9 35 35 H 1.08995 * 117.50111 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3643 2.1089 -1.0838 5 7 2.7493 3.2913 -0.6883 6 6 2.6644 3.3601 0.6485 7 6 2.2089 2.1753 1.0985 8 6 1.9581 1.7964 2.5353 9 7 3.1356 1.1089 3.0716 10 6 4.1314 1.8278 3.6770 11 1 5.1642 1.5468 3.5331 12 6 3.8135 2.9179 4.4756 13 7 2.6056 3.0296 4.9860 14 14 5.1003 4.2260 4.8258 15 1 6.3681 3.8695 4.1397 16 1 4.6198 5.5392 4.3261 17 1 5.3356 4.3094 6.2897 18 6 3.2474 -0.3476 2.9603 19 6 4.3590 -1.0337 3.7568 20 6 4.4729 -0.9086 2.2362 21 1 -0.3633 0.5865 0.8438 22 1 -0.3633 0.4375 -0.9298 23 1 -0.3633 -1.0240 0.0861 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.3319 1.7672 -2.1078 27 1 2.9163 4.2159 1.2573 28 1 1.7649 2.6957 3.1200 29 1 1.0941 1.1341 2.5910 30 1 2.3613 3.8253 5.4841 31 1 2.3055 -0.8839 2.8453 32 1 5.0068 -0.4014 4.3641 33 1 4.1485 -2.0216 4.1662 34 1 4.3373 -1.8144 1.6452 35 1 5.1960 -0.1941 1.8431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651836057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:01 Heat of formation + Delta-G solvation = 106.838224 kcal Electronic energy + Delta-G solvation = -17287.591026 eV Core-core repulsion = 14709.344240 eV Total energy + Delta-G solvation = -2578.246786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30687 -37.10356 -34.46160 -33.69309 -31.16768 -29.57847 -28.73424 -25.43778 -23.70293 -23.12816 -21.45882 -20.67284 -20.05440 -19.05455 -16.85707 -16.04894 -15.47307 -14.86825 -14.55047 -14.29611 -13.80154 -13.45106 -12.97532 -12.72043 -12.66131 -12.16837 -12.01683 -11.82483 -11.24217 -11.18084 -10.82433 -10.70954 -10.67268 -10.43335 -10.05347 -9.76561 -9.45226 -9.18185 -8.86433 -8.47542 -7.51568 -6.67216 -5.87503 -3.50292 2.81653 3.34133 3.43332 3.43969 3.47715 3.94291 4.42607 4.83225 4.90013 5.15006 5.21315 5.25667 5.29028 5.37736 5.57793 5.71269 5.78188 5.84343 5.99160 6.07985 6.13566 6.24911 6.36934 6.40986 6.51515 6.73682 6.88596 7.08500 7.10432 7.45210 7.61990 7.74459 7.94701 8.39634 8.83232 9.05020 9.66691 10.22136 11.09900 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.010808 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.617167 B = 2590.029005 C = 3255.676186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.453 5.453 4 C 0.146 3.854 5 N -0.500 5.500 6 C -0.036 4.036 7 C 0.004 3.996 8 C 0.213 3.787 9 N -0.540 5.540 10 C -0.255 4.255 11 H 0.062 0.938 12 C 0.018 3.982 13 N -0.884 5.884 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.289 1.289 18 C 0.124 3.876 19 C -0.191 4.191 20 C -0.228 4.228 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.189 0.811 27 H 0.159 0.841 28 H 0.119 0.881 29 H 0.033 0.967 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 -7.018 -7.401 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.139 5.139 4 C -0.135 4.135 5 N -0.219 5.219 6 C -0.184 4.184 7 C -0.113 4.113 8 C 0.085 3.915 9 N -0.256 5.256 10 C -0.384 4.384 11 H 0.079 0.921 12 C -0.182 4.182 13 N -0.526 5.526 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.216 1.216 18 C 0.015 3.985 19 C -0.229 4.229 20 C -0.269 4.269 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.206 0.794 27 H 0.177 0.823 28 H 0.136 0.864 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.699 -6.393 -7.707 10.675 hybrid contribution 0.544 -0.041 0.517 0.751 sum -3.155 -6.434 -7.190 10.151 Atomic orbital electron populations 1.22152 0.94819 1.02569 1.02967 1.21767 0.94959 0.81220 1.04334 1.45400 1.49284 1.11941 1.07230 1.24551 1.06547 0.89256 0.93183 1.70135 1.20218 1.18738 1.12826 1.21898 1.07796 0.98377 0.90281 1.23048 1.05005 0.91704 0.91558 1.19563 0.87827 1.00154 0.83926 1.43359 1.21385 0.98317 1.62509 1.18938 0.87410 1.10262 1.21774 0.92051 1.25127 0.96748 1.01113 0.95235 1.70027 1.20124 1.27520 1.34903 0.86355 0.81677 0.82024 0.77542 1.20008 1.21018 1.21577 1.21133 0.90426 0.85910 1.01055 1.23055 1.05591 1.00596 0.93674 1.23388 1.06664 1.02214 0.94610 0.91574 0.92320 0.91159 0.89909 0.88748 0.79389 0.82328 0.86376 0.94824 0.93345 0.89785 0.88141 0.90680 0.91081 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.10 1.33 6.61 -4.04 -0.03 1.31 16 3 N -0.45 -7.89 2.75 -113.99 -0.31 -8.20 16 4 C 0.15 2.55 12.56 -90.38 -1.14 1.42 16 5 N -0.50 -10.50 11.25 -14.67 -0.16 -10.66 16 6 C -0.04 -0.81 11.79 -17.81 -0.21 -1.02 16 7 C 0.00 0.08 6.53 -81.60 -0.53 -0.45 16 8 C 0.21 4.75 5.48 -5.19 -0.03 4.72 16 9 N -0.54 -12.71 2.76 -167.02 -0.46 -13.17 16 10 C -0.25 -6.66 8.12 -15.06 -0.12 -6.79 16 11 H 0.06 1.66 7.27 -52.49 -0.38 1.28 16 12 C 0.02 0.49 4.97 -17.43 -0.09 0.40 16 13 N -0.88 -24.15 11.45 55.49 0.64 -23.52 16 14 Si 0.90 21.29 29.61 -169.99 -5.03 16.26 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.12 2.50 5.25 -67.93 -0.36 2.14 16 19 C -0.19 -3.68 9.79 -26.73 -0.26 -3.94 16 20 C -0.23 -4.23 10.19 -26.73 -0.27 -4.50 16 21 H 0.07 0.87 7.92 -51.93 -0.41 0.45 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 25 H 0.09 1.36 5.62 -51.93 -0.29 1.07 16 26 H 0.19 2.48 8.06 -52.48 -0.42 2.05 16 27 H 0.16 3.59 8.06 -52.49 -0.42 3.16 16 28 H 0.12 2.99 5.51 -51.93 -0.29 2.70 16 29 H 0.03 0.69 7.75 -51.93 -0.40 0.29 16 30 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 31 H 0.08 1.53 7.29 -51.93 -0.38 1.15 16 32 H 0.10 2.17 6.84 -51.92 -0.35 1.81 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 292.12 15.07 4.40 4.40 Total: -1.00 -29.37 292.12 -8.61 -37.98 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.02 Total: 5.13 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.65 Total: -8.22 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.30 Total: -55.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.37 -8.61 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651836057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.822 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds