Wall clock time and date at job start Sun Mar 29 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46913 * 2 1 4 4 C 1.35042 * 126.39743 * 265.58716 * 3 2 1 5 5 N 1.30493 * 108.70103 * 179.97438 * 4 3 2 6 6 C 1.34130 * 109.25912 * 0.02562 * 5 4 3 7 7 C 1.34674 * 108.01708 * 359.97438 * 6 5 4 8 8 C 1.50692 * 126.59216 * 179.97438 * 7 6 5 9 9 N 1.46510 * 109.46922 * 265.10467 * 8 7 6 10 10 C 1.36939 * 119.99520 * 90.12939 * 9 8 7 11 11 H 1.07999 * 119.99301 * 217.89294 * 10 9 8 12 12 C 1.38811 * 120.00328 * 37.88874 * 10 9 8 13 13 N 1.31616 * 119.99798 * 20.72634 * 12 10 9 14 14 Si 1.86804 * 120.00060 * 200.71982 * 12 10 9 15 15 H 1.48503 * 109.46977 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47210 * 120.00074 * 14 12 10 17 17 H 1.48502 * 109.47058 * 240.00340 * 14 12 10 18 18 C 1.46496 * 120.00208 * 270.12577 * 9 8 7 19 19 C 1.52999 * 117.49909 * 191.02693 * 18 9 8 20 20 C 1.52998 * 117.49575 * 122.40382 * 18 9 8 21 21 H 1.08995 * 109.46754 * 304.80206 * 1 2 3 22 22 H 1.08994 * 109.46952 * 64.80106 * 1 2 3 23 23 H 1.08996 * 109.47120 * 184.80435 * 1 2 3 24 24 H 1.08998 * 109.46743 * 240.00112 * 2 1 3 25 25 H 1.09001 * 109.47254 * 120.00372 * 2 1 3 26 26 H 1.08004 * 125.64999 * 359.71804 * 4 3 2 27 27 H 1.07994 * 125.99200 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47639 * 25.10269 * 8 7 6 29 29 H 1.09002 * 109.47709 * 145.11069 * 8 7 6 30 30 H 0.97002 * 119.99507 * 184.93575 * 13 12 10 31 31 H 1.09000 * 115.54724 * 336.73606 * 18 9 8 32 32 H 1.09007 * 117.49756 * 0.02562 * 19 18 9 33 33 H 1.08991 * 117.49775 * 145.02175 * 19 18 9 34 34 H 1.09006 * 117.49889 * 214.97844 * 20 18 9 35 35 H 1.08995 * 117.50111 * 0.02562 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3643 2.1089 -1.0838 5 7 2.7493 3.2913 -0.6883 6 6 2.6644 3.3601 0.6485 7 6 2.2089 2.1753 1.0985 8 6 1.9581 1.7964 2.5353 9 7 3.1356 1.1089 3.0716 10 6 4.1314 1.8278 3.6770 11 1 5.1642 1.5468 3.5331 12 6 3.8135 2.9179 4.4756 13 7 2.6056 3.0296 4.9860 14 14 5.1003 4.2260 4.8258 15 1 6.3681 3.8695 4.1397 16 1 4.6198 5.5392 4.3261 17 1 5.3356 4.3094 6.2897 18 6 3.2474 -0.3476 2.9603 19 6 4.3590 -1.0337 3.7568 20 6 4.4729 -0.9086 2.2362 21 1 -0.3633 0.5865 0.8438 22 1 -0.3633 0.4375 -0.9298 23 1 -0.3633 -1.0240 0.0861 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.3319 1.7672 -2.1078 27 1 2.9163 4.2159 1.2573 28 1 1.7649 2.6957 3.1200 29 1 1.0941 1.1341 2.5910 30 1 2.3613 3.8253 5.4841 31 1 2.3055 -0.8839 2.8453 32 1 5.0068 -0.4014 4.3641 33 1 4.1485 -2.0216 4.1662 34 1 4.3373 -1.8144 1.6452 35 1 5.1960 -0.1941 1.8431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651836057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:01 Heat of formation + Delta-G solvation = 91.548436 kcal Electronic energy + Delta-G solvation = -17288.254041 eV Core-core repulsion = 14709.344240 eV Total energy + Delta-G solvation = -2578.909801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.78988 -38.76943 -35.69226 -35.46201 -33.02833 -30.86491 -30.35010 -27.28653 -25.27985 -24.39288 -22.97670 -22.21033 -21.69355 -20.57316 -18.49015 -17.69575 -17.18015 -16.45165 -15.96819 -15.92602 -15.30383 -14.81924 -14.58866 -14.25132 -14.12603 -13.64831 -13.42734 -13.14753 -12.95592 -12.72261 -12.57018 -12.32609 -12.22141 -12.05328 -11.92509 -11.46100 -11.01375 -10.74797 -10.42495 -10.27524 -9.11174 -8.57611 -7.84791 -5.51847 1.31561 1.41592 1.46226 1.53858 2.12569 2.35519 2.48201 3.13426 3.41519 3.56300 3.90981 3.96744 4.14607 4.21900 4.22571 4.38065 4.39488 4.53614 4.59283 4.72853 4.80966 4.90601 4.91525 5.02714 5.21868 5.27875 5.31427 5.42801 5.52508 5.65344 5.72601 5.98385 6.41669 6.60704 7.10379 7.31204 7.77883 8.27645 9.06696 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.010808 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.617167 B = 2590.029005 C = 3255.676186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 N -0.448 5.448 4 C 0.167 3.833 5 N -0.535 5.535 6 C -0.066 4.066 7 C -0.004 4.004 8 C 0.223 3.777 9 N -0.555 5.555 10 C -0.253 4.253 11 H 0.045 0.955 12 C -0.021 4.021 13 N -0.907 5.907 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.287 1.287 18 C 0.106 3.894 19 C -0.192 4.192 20 C -0.204 4.204 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.239 0.761 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.254 0.746 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -9.486 -9.286 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.029 4.029 3 N -0.132 5.132 4 C -0.115 4.115 5 N -0.254 5.254 6 C -0.213 4.213 7 C -0.122 4.122 8 C 0.095 3.905 9 N -0.272 5.272 10 C -0.383 4.383 11 H 0.063 0.937 12 C -0.219 4.219 13 N -0.551 5.551 14 Si 0.770 3.230 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.214 1.214 18 C -0.002 4.002 19 C -0.231 4.231 20 C -0.245 4.245 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.138 0.862 25 H 0.104 0.896 26 H 0.255 0.745 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.190 -8.897 -9.593 13.738 hybrid contribution 0.686 0.632 1.004 1.371 sum -3.503 -8.265 -8.589 12.424 Atomic orbital electron populations 1.22112 0.93226 1.04083 1.02370 1.22152 0.96248 0.78785 1.05697 1.45576 1.48452 1.13231 1.05896 1.25471 1.03193 0.87962 0.94857 1.70085 1.22282 1.21118 1.11959 1.21770 1.09589 0.98643 0.91280 1.22600 1.05677 0.92041 0.91883 1.19235 0.87967 0.98878 0.84391 1.43459 1.20960 0.99919 1.62817 1.18908 0.87495 1.10746 1.21171 0.93712 1.25601 0.97998 1.02567 0.95770 1.70101 1.21216 1.27781 1.35962 0.85628 0.79936 0.80199 0.77192 1.20266 1.21343 1.21369 1.21406 0.92119 0.84212 1.02418 1.23071 1.04510 1.01451 0.94061 1.23284 1.04259 1.02583 0.94345 0.94020 0.91415 0.88224 0.86245 0.89637 0.74508 0.84640 0.89852 0.93493 0.93640 0.87161 0.91268 0.87494 0.87200 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.28 16 2 C 0.09 2.08 6.61 86.38 0.57 2.65 16 3 N -0.45 -14.50 2.75 -514.56 -1.42 -15.92 16 4 C 0.17 5.37 12.56 180.26 2.26 7.64 16 5 N -0.54 -22.13 11.25 -200.31 -2.25 -24.39 16 6 C -0.07 -3.01 11.79 83.52 0.98 -2.03 16 7 C 0.00 -0.15 6.53 40.95 0.27 0.12 16 8 C 0.22 10.07 5.48 85.63 0.47 10.54 16 9 N -0.56 -26.25 2.76 -682.35 -1.88 -28.13 16 10 C -0.25 -13.58 8.12 84.03 0.68 -12.90 16 11 H 0.05 2.52 7.27 -2.91 -0.02 2.50 16 12 C -0.02 -1.16 4.97 84.86 0.42 -0.74 16 13 N -0.91 -51.17 11.45 21.65 0.25 -50.92 16 14 Si 0.94 45.20 29.61 68.60 2.03 47.23 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 18 C 0.11 4.10 5.25 44.99 0.24 4.34 16 19 C -0.19 -7.10 9.79 30.59 0.30 -6.80 16 20 C -0.20 -7.07 10.19 30.59 0.31 -6.76 16 21 H 0.04 1.00 7.92 -2.39 -0.02 0.98 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.12 1.87 8.13 -2.39 -0.02 1.85 16 25 H 0.09 2.13 5.62 -2.39 -0.01 2.12 16 26 H 0.24 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.14 6.59 8.06 -2.91 -0.02 6.57 16 28 H 0.08 4.41 5.51 -2.39 -0.01 4.40 16 29 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 30 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 31 H 0.11 3.66 7.29 -2.39 -0.02 3.65 16 32 H 0.07 3.00 6.84 -2.38 -0.02 2.99 16 33 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -66.02 292.12 5.04 -60.98 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.07 Total: 17.37 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 7.24 Total: -6.22 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.30 Total: -119.36 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.02 5.04 -60.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651836057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.526 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds