Wall clock time and date at job start Sun Mar 29 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46750 * 2 1 4 4 C 1.36929 * 120.00441 * 83.06653 * 3 2 1 5 5 H 1.07999 * 119.99991 * 41.16174 * 4 3 2 6 6 C 1.38817 * 120.00190 * 220.88769 * 4 3 2 7 7 N 1.31618 * 119.99931 * 5.03448 * 6 4 3 8 8 Si 1.86799 * 120.00175 * 185.02995 * 6 4 3 9 9 H 1.48499 * 109.47139 * 60.00231 * 8 6 4 10 10 H 1.48492 * 109.47179 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46942 * 300.00311 * 8 6 4 12 12 C 1.46507 * 119.99832 * 263.06372 * 3 2 1 13 13 H 1.08992 * 109.47387 * 174.58828 * 12 3 2 14 14 C 1.53003 * 109.46923 * 54.58804 * 12 3 2 15 15 C 1.50696 * 109.47334 * 294.59234 * 12 3 2 16 16 C 1.38387 * 120.00312 * 204.99945 * 15 12 3 17 17 N 1.32123 * 119.99902 * 179.97438 * 16 15 12 18 18 C 1.32149 * 120.00351 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00412 * 179.97438 * 18 17 16 20 20 C 1.38346 * 119.99807 * 0.02562 * 18 17 16 21 21 N 1.32133 * 120.00118 * 24.71686 * 15 12 3 22 22 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 23 23 H 1.08989 * 109.47292 * 300.00209 * 1 2 3 24 24 H 1.08999 * 109.47088 * 60.00826 * 1 2 3 25 25 H 1.08995 * 109.47721 * 239.99842 * 2 1 3 26 26 H 1.08999 * 109.47088 * 119.99174 * 2 1 3 27 27 H 0.96992 * 120.00289 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47010 * 60.00013 * 14 12 3 29 29 H 1.08994 * 109.47336 * 179.97438 * 14 12 3 30 30 H 1.08992 * 109.47109 * 300.00195 * 14 12 3 31 31 H 1.08001 * 119.99910 * 359.97438 * 16 15 12 32 32 H 1.08997 * 109.47271 * 89.99704 * 19 18 17 33 33 H 1.09001 * 109.47248 * 210.00427 * 19 18 17 34 34 H 1.09003 * 109.47024 * 330.00185 * 19 18 17 35 35 H 1.08001 * 119.99945 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1115 2.0746 1.1771 5 1 2.4811 1.5836 2.0652 6 6 1.7363 3.4101 1.2277 7 7 1.1985 3.9830 0.1718 8 14 1.9945 4.3942 2.7943 9 1 3.4401 4.4147 3.1334 10 1 1.5136 5.7843 2.5906 11 1 1.2344 3.7657 3.9045 12 6 2.4069 2.0208 -1.2595 13 1 2.6496 3.0674 -1.0759 14 6 1.2481 1.9331 -2.2548 15 6 3.6122 1.3181 -1.8288 16 6 4.4681 1.9929 -2.6816 17 7 5.5251 1.3768 -3.1803 18 6 5.7655 0.1164 -2.8644 19 6 6.9708 -0.5865 -3.4337 20 6 4.9099 -0.5583 -2.0120 21 7 3.8551 0.0591 -1.5094 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.9360 4.9161 0.2072 28 1 0.3762 2.4414 -1.8430 29 1 1.5369 2.4092 -3.1917 30 1 1.0054 0.8865 -2.4384 31 1 4.2719 3.0232 -2.9394 32 1 7.8213 -0.4476 -2.7663 33 1 6.7573 -1.6508 -3.5336 34 1 7.2056 -0.1696 -4.4131 35 1 5.1060 -1.5886 -1.7541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653267911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:31 Heat of formation + Delta-G solvation = 62.857341 kcal Electronic energy + Delta-G solvation = -17065.216190 eV Core-core repulsion = 14485.062250 eV Total energy + Delta-G solvation = -2580.153940 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58380 -36.56690 -33.75690 -32.64860 -31.72344 -30.47974 -28.21267 -26.95549 -24.34426 -23.76353 -22.78721 -21.23428 -19.56593 -17.44460 -16.46007 -15.63653 -15.28406 -14.61769 -14.50059 -13.86745 -13.57157 -13.06834 -12.76653 -12.43151 -12.32606 -12.08134 -11.80435 -11.43870 -11.34455 -11.09763 -10.91554 -10.84990 -10.52944 -10.32900 -10.22682 -10.09855 -9.74830 -9.51854 -8.61796 -8.35890 -8.27619 -6.45263 -5.82811 -3.39090 1.33630 1.72676 3.36982 3.41821 3.43969 4.23124 4.46656 4.49667 4.79755 4.98752 5.17269 5.38183 5.44232 5.61623 5.65964 5.80371 5.94520 6.01565 6.14267 6.35953 6.41505 6.56650 6.61584 6.72560 6.77146 6.88980 7.03843 7.20373 7.42832 7.43846 7.51862 7.82019 7.89037 8.43202 8.58378 9.25036 9.83373 10.45695 11.24129 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.008244 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.307907 B = 3395.646439 C = 3745.149827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 N -0.569 5.569 4 C -0.254 4.254 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.900 5.900 8 Si 0.901 3.099 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.229 3.771 13 H 0.121 0.879 14 C -0.137 4.137 15 C 0.090 3.910 16 C 0.043 3.957 17 N -0.444 5.444 18 C 0.039 3.961 19 C -0.092 4.092 20 C 0.045 3.955 21 N -0.417 5.417 22 H 0.026 0.974 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.256 0.744 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -6.502 -6.220 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 N -0.288 5.288 4 C -0.384 4.384 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.543 5.543 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.208 1.208 12 C 0.119 3.881 13 H 0.138 0.862 14 C -0.196 4.196 15 C -0.052 4.052 16 C -0.118 4.118 17 N -0.160 5.160 18 C -0.101 4.101 19 C -0.150 4.150 20 C -0.115 4.115 21 N -0.131 5.131 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.181 0.819 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.424 -6.342 -6.201 10.397 hybrid contribution 0.121 0.632 0.876 1.087 sum 5.545 -5.709 -5.325 9.576 Atomic orbital electron populations 1.22404 1.00416 0.98021 1.01770 1.20860 0.90716 0.86898 0.99104 1.43564 1.72668 1.10185 1.02405 1.19061 1.36880 0.93622 0.88857 0.92452 1.25359 0.97366 0.98790 0.97028 1.69817 1.43825 1.12202 1.28443 0.86405 0.77952 0.79087 0.83470 1.21040 1.21532 1.20775 1.19443 0.85902 0.97207 0.85506 0.86167 1.22094 1.00732 0.99542 0.97258 1.24347 0.98965 0.90581 0.91322 1.23571 0.91211 1.01351 0.95692 1.68155 1.17755 1.08747 1.21348 1.22068 0.98318 0.91883 0.97839 1.20544 0.94036 0.99083 1.01312 1.23621 0.91960 1.01055 0.94871 1.68553 1.16185 1.09586 1.18807 0.95517 0.93142 0.93493 0.92450 0.95204 0.93366 0.90253 0.94890 0.94769 0.81940 0.90857 0.90928 0.90917 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 10.00 37.16 0.37 -3.09 16 2 C 0.15 3.32 4.94 -4.04 -0.02 3.30 16 3 N -0.57 -14.00 2.24 -166.98 -0.37 -14.38 16 4 C -0.25 -6.86 9.48 -15.06 -0.14 -7.00 16 5 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 6 C 0.01 0.37 5.12 -17.43 -0.09 0.28 16 7 N -0.90 -24.34 10.80 55.49 0.60 -23.74 16 8 Si 0.90 21.32 29.56 -169.99 -5.02 16.30 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.23 5.20 2.03 -69.08 -0.14 5.06 16 13 H 0.12 3.04 5.93 -51.93 -0.31 2.73 16 14 C -0.14 -2.86 7.99 37.16 0.30 -2.56 16 15 C 0.09 1.86 5.85 -82.41 -0.48 1.37 16 16 C 0.04 0.80 10.90 -17.37 -0.19 0.61 16 17 N -0.44 -7.89 10.42 -9.29 -0.10 -7.99 16 18 C 0.04 0.61 6.79 -82.42 -0.56 0.05 16 19 C -0.09 -1.01 10.19 36.01 0.37 -0.64 16 20 C 0.05 0.74 10.88 -17.38 -0.19 0.55 16 21 N -0.42 -8.29 7.42 -9.29 -0.07 -8.36 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 1.13 8.14 -51.94 -0.42 0.71 16 24 H 0.05 0.98 6.23 -51.93 -0.32 0.66 16 25 H 0.06 1.22 5.79 -51.93 -0.30 0.92 16 26 H 0.03 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.08 1.83 7.65 -51.93 -0.40 1.43 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 31 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -28.93 287.37 -6.43 -35.36 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.02 Total: 0.53 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.78 Total: -2.05 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.06 Total: -54.47 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.93 -6.43 -35.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653267911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.218 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds