Wall clock time and date at job start Sun Mar 29 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46750 * 2 1 4 4 C 1.36929 * 120.00441 * 83.06653 * 3 2 1 5 5 H 1.07999 * 119.99991 * 41.16174 * 4 3 2 6 6 C 1.38817 * 120.00190 * 220.88769 * 4 3 2 7 7 N 1.31618 * 119.99931 * 5.03448 * 6 4 3 8 8 Si 1.86799 * 120.00175 * 185.02995 * 6 4 3 9 9 H 1.48499 * 109.47139 * 60.00231 * 8 6 4 10 10 H 1.48492 * 109.47179 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46942 * 300.00311 * 8 6 4 12 12 C 1.46507 * 119.99832 * 263.06372 * 3 2 1 13 13 H 1.08992 * 109.47387 * 174.58828 * 12 3 2 14 14 C 1.53003 * 109.46923 * 54.58804 * 12 3 2 15 15 C 1.50696 * 109.47334 * 294.59234 * 12 3 2 16 16 C 1.38387 * 120.00312 * 204.99945 * 15 12 3 17 17 N 1.32123 * 119.99902 * 179.97438 * 16 15 12 18 18 C 1.32149 * 120.00351 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00412 * 179.97438 * 18 17 16 20 20 C 1.38346 * 119.99807 * 0.02562 * 18 17 16 21 21 N 1.32133 * 120.00118 * 24.71686 * 15 12 3 22 22 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 23 23 H 1.08989 * 109.47292 * 300.00209 * 1 2 3 24 24 H 1.08999 * 109.47088 * 60.00826 * 1 2 3 25 25 H 1.08995 * 109.47721 * 239.99842 * 2 1 3 26 26 H 1.08999 * 109.47088 * 119.99174 * 2 1 3 27 27 H 0.96992 * 120.00289 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47010 * 60.00013 * 14 12 3 29 29 H 1.08994 * 109.47336 * 179.97438 * 14 12 3 30 30 H 1.08992 * 109.47109 * 300.00195 * 14 12 3 31 31 H 1.08001 * 119.99910 * 359.97438 * 16 15 12 32 32 H 1.08997 * 109.47271 * 89.99704 * 19 18 17 33 33 H 1.09001 * 109.47248 * 210.00427 * 19 18 17 34 34 H 1.09003 * 109.47024 * 330.00185 * 19 18 17 35 35 H 1.08001 * 119.99945 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1115 2.0746 1.1771 5 1 2.4811 1.5836 2.0652 6 6 1.7363 3.4101 1.2277 7 7 1.1985 3.9830 0.1718 8 14 1.9945 4.3942 2.7943 9 1 3.4401 4.4147 3.1334 10 1 1.5136 5.7843 2.5906 11 1 1.2344 3.7657 3.9045 12 6 2.4069 2.0208 -1.2595 13 1 2.6496 3.0674 -1.0759 14 6 1.2481 1.9331 -2.2548 15 6 3.6122 1.3181 -1.8288 16 6 4.4681 1.9929 -2.6816 17 7 5.5251 1.3768 -3.1803 18 6 5.7655 0.1164 -2.8644 19 6 6.9708 -0.5865 -3.4337 20 6 4.9099 -0.5583 -2.0120 21 7 3.8551 0.0591 -1.5094 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.9360 4.9161 0.2072 28 1 0.3762 2.4414 -1.8430 29 1 1.5369 2.4092 -3.1917 30 1 1.0054 0.8865 -2.4384 31 1 4.2719 3.0232 -2.9394 32 1 7.8213 -0.4476 -2.7663 33 1 6.7573 -1.6508 -3.5336 34 1 7.2056 -0.1696 -4.4131 35 1 5.1060 -1.5886 -1.7541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653267911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:31 Heat of formation + Delta-G solvation = 45.819953 kcal Electronic energy + Delta-G solvation = -17065.954987 eV Core-core repulsion = 14485.062250 eV Total energy + Delta-G solvation = -2580.892737 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96795 -38.30638 -35.21506 -34.06106 -33.64566 -31.97135 -30.07104 -28.23961 -26.10169 -25.30462 -24.25201 -22.86791 -21.31123 -19.09743 -18.12623 -17.14360 -16.72678 -16.25505 -15.93516 -15.70404 -15.29263 -14.62758 -14.09518 -13.88085 -13.62205 -13.40685 -13.21967 -13.15400 -12.96034 -12.88981 -12.71633 -12.51659 -12.11430 -12.05838 -11.97905 -11.89358 -11.50526 -11.25304 -10.55693 -9.79699 -9.72754 -8.38530 -7.83611 -5.43514 -0.01736 0.33900 1.47219 1.47710 1.54191 2.51412 2.85871 3.23263 3.33364 3.42811 3.64088 3.86067 4.03444 4.42416 4.43708 4.59049 4.64442 4.71765 4.82511 4.84335 4.93602 4.96421 5.01184 5.07538 5.16780 5.24925 5.43472 5.52503 5.64353 5.69038 5.74091 5.79883 6.51084 6.56316 7.03365 7.26545 7.92522 8.48330 9.19315 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.008244 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.307907 B = 3395.646439 C = 3745.149827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 N -0.583 5.583 4 C -0.270 4.270 5 H 0.045 0.955 6 C -0.026 4.026 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.233 3.767 13 H 0.089 0.911 14 C -0.122 4.122 15 C 0.064 3.936 16 C 0.037 3.963 17 N -0.457 5.457 18 C 0.049 3.951 19 C -0.089 4.089 20 C 0.043 3.957 21 N -0.441 5.441 22 H 0.058 0.942 23 H 0.025 0.975 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.253 0.747 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.171 0.829 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -8.002 -6.944 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 N -0.303 5.303 4 C -0.401 4.401 5 H 0.062 0.938 6 C -0.223 4.223 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.206 1.206 12 C 0.124 3.876 13 H 0.106 0.894 14 C -0.181 4.181 15 C -0.077 4.077 16 C -0.123 4.123 17 N -0.173 5.173 18 C -0.092 4.092 19 C -0.147 4.147 20 C -0.118 4.118 21 N -0.155 5.155 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.188 0.812 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.775 -7.826 -6.938 12.461 hybrid contribution -0.178 0.967 1.044 1.434 sum 6.597 -6.859 -5.894 11.194 Atomic orbital electron populations 1.22272 0.99458 0.99616 1.00184 1.20871 0.91399 0.85851 0.99119 1.43706 1.73426 1.10825 1.02330 1.19167 1.37097 0.94258 0.89580 0.93785 1.25912 0.97519 0.99491 0.99416 1.69957 1.44240 1.12030 1.29482 0.85535 0.77578 0.77755 0.80585 1.21061 1.21378 1.20613 1.19180 0.87383 0.95754 0.85257 0.89376 1.21895 0.99146 0.99558 0.97518 1.23799 0.99010 0.91501 0.93371 1.23608 0.91319 1.01774 0.95590 1.68273 1.17333 1.09951 1.21748 1.22900 0.98993 0.91088 0.96211 1.20714 0.92168 1.00364 1.01430 1.24268 0.90821 1.02506 0.94225 1.68412 1.18028 1.09477 1.19593 0.92262 0.95557 0.94120 0.91405 0.96021 0.93724 0.92950 0.92991 0.94273 0.81209 0.89345 0.87774 0.90447 0.78887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.43 10.00 71.98 0.72 -5.71 16 2 C 0.15 6.77 4.94 86.38 0.43 7.20 16 3 N -0.58 -29.21 2.24 -682.20 -1.53 -30.74 16 4 C -0.27 -14.95 9.48 84.04 0.80 -14.15 16 5 H 0.04 2.50 7.83 -2.91 -0.02 2.48 16 6 C -0.03 -1.40 5.12 84.86 0.43 -0.97 16 7 N -0.91 -50.65 10.80 21.65 0.23 -50.42 16 8 Si 0.96 44.52 29.56 68.60 2.03 46.55 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.23 10.81 2.03 44.24 0.09 10.90 16 13 H 0.09 4.63 5.93 -2.39 -0.01 4.61 16 14 C -0.12 -5.16 7.99 71.98 0.58 -4.58 16 15 C 0.06 2.63 5.85 42.55 0.25 2.87 16 16 C 0.04 1.35 10.90 84.68 0.92 2.27 16 17 N -0.46 -15.44 10.42 -183.30 -1.91 -17.35 16 18 C 0.05 1.40 6.79 42.54 0.29 1.68 16 19 C -0.09 -1.56 10.19 71.24 0.73 -0.84 16 20 C 0.04 1.28 10.88 84.67 0.92 2.20 16 21 N -0.44 -16.98 7.42 -183.30 -1.36 -18.34 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.70 6.23 -2.39 -0.01 1.68 16 25 H 0.07 2.84 5.79 -2.39 -0.01 2.83 16 26 H 0.02 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.05 2.47 7.65 -2.39 -0.02 2.45 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.57 6.67 -2.39 -0.02 1.55 16 31 H 0.17 5.75 8.06 -2.91 -0.02 5.72 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -62.98 287.37 4.68 -58.30 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.07 Total: 11.12 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.15 Total: 0.88 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -4.57 Total: -116.85 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.98 4.68 -58.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653267911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.118 kcal (2) G-P(sol) polarization free energy of solvation -62.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds