Wall clock time and date at job start Sun Mar 29 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40090 * 126.03598 * 2 1 4 4 C 1.30835 * 108.20543 * 179.97438 * 3 2 1 5 5 C 1.39872 * 108.20189 * 0.02562 * 4 3 2 6 6 C 1.34941 * 126.03677 * 180.28645 * 2 1 3 7 7 C 1.50697 * 126.13134 * 359.97438 * 6 2 1 8 8 H 1.08997 * 109.49736 * 335.14046 * 7 6 2 9 9 C 1.53046 * 109.49860 * 215.03984 * 7 6 2 10 10 C 1.53042 * 109.53567 * 178.68315 * 9 7 6 11 11 C 1.53190 * 109.31396 * 61.36585 * 10 9 7 12 12 N 1.46932 * 108.77850 * 305.36576 * 11 10 9 13 13 C 1.36938 * 120.62970 * 233.58592 * 12 11 10 14 14 H 1.08000 * 119.99828 * 27.69936 * 13 12 11 15 15 C 1.38810 * 119.99841 * 207.69173 * 13 12 11 16 16 N 1.31618 * 119.99906 * 17.36015 * 15 13 12 17 17 Si 1.86802 * 120.00096 * 197.35840 * 15 13 12 18 18 H 1.48499 * 109.47016 * 60.00108 * 17 15 13 19 19 H 1.48500 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46728 * 300.00218 * 17 15 13 21 21 C 1.46922 * 118.73749 * 53.60437 * 12 11 10 22 22 H 1.09009 * 109.46698 * 90.02440 * 1 2 3 23 23 H 1.08999 * 109.47249 * 210.01986 * 1 2 3 24 24 H 1.08996 * 109.47544 * 330.02545 * 1 2 3 25 25 H 1.07994 * 125.89965 * 179.97438 * 4 3 2 26 26 H 1.08001 * 126.03899 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.45657 * 298.70362 * 9 7 6 28 28 H 1.08998 * 109.45888 * 58.66896 * 9 7 6 29 29 H 1.09004 * 109.50042 * 301.41935 * 10 9 7 30 30 H 1.09001 * 109.52297 * 181.33379 * 10 9 7 31 31 H 1.08993 * 109.58789 * 185.57664 * 11 10 9 32 32 H 1.09008 * 109.70222 * 65.22016 * 11 10 9 33 33 H 0.96997 * 120.00021 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.58840 * 186.60921 * 21 12 11 35 35 H 1.08999 * 109.70244 * 66.24884 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 0.0006 5 6 3.5437 -0.6665 0.0003 6 6 2.2589 -1.0912 -0.0055 7 6 1.7974 -2.5257 -0.0121 8 1 0.7987 -2.5886 0.4199 9 6 2.7657 -3.3777 0.8119 10 6 2.2799 -4.8288 0.8329 11 6 2.2529 -5.3749 -0.5981 12 7 1.4398 -4.4784 -1.4312 13 6 0.3990 -4.9690 -2.1737 14 1 -0.1212 -5.8591 -1.8522 15 6 0.0127 -4.3220 -3.3395 16 7 0.8269 -3.4640 -3.9167 17 14 -1.6628 -4.6692 -4.0890 18 1 -2.7246 -4.3148 -3.1133 19 1 -1.8315 -3.8579 -5.3213 20 1 -1.7638 -6.1113 -4.4286 21 6 1.7650 -3.0458 -1.4527 22 1 -0.3633 -0.0004 -1.0278 23 1 -0.3634 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 4.4053 1.3711 0.0003 26 1 4.4211 -1.2962 0.0003 27 1 3.7588 -3.3336 0.3647 28 1 2.8092 -2.9945 1.8313 29 1 1.2767 -4.8705 1.2572 30 1 2.9568 -5.4307 1.4393 31 1 1.8149 -6.3729 -0.6001 32 1 3.2678 -5.4205 -0.9932 33 1 0.5570 -3.0122 -4.7315 34 1 1.0049 -2.5071 -2.0186 35 1 2.7399 -2.8972 -1.9168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657021135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:48 Heat of formation + Delta-G solvation = 72.161200 kcal Electronic energy + Delta-G solvation = -17147.624863 eV Core-core repulsion = 14567.874368 eV Total energy + Delta-G solvation = -2579.750495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19293 -39.11258 -35.21060 -34.19035 -33.16989 -31.70532 -29.49519 -27.58505 -27.19302 -24.23725 -23.87668 -22.11421 -21.07030 -19.97809 -18.74726 -17.63480 -16.88870 -16.30300 -15.82268 -15.48623 -15.23774 -14.76913 -14.71837 -14.43976 -14.05328 -13.78169 -13.56465 -13.20923 -13.14609 -12.90894 -12.58966 -12.39858 -12.09284 -11.92156 -11.79116 -11.55496 -11.23871 -11.20266 -10.56407 -10.16068 -9.39877 -8.70100 -7.89144 -5.34983 0.96912 1.45845 1.47101 1.54390 1.68687 1.97351 2.49691 3.24926 3.51238 3.74155 3.92134 3.98590 4.17924 4.32695 4.35958 4.40957 4.48784 4.58662 4.65714 4.81958 4.82718 4.90925 5.05362 5.10706 5.15297 5.25851 5.34481 5.44076 5.53918 5.64594 5.71567 5.83353 6.12699 6.36219 6.81858 7.11789 7.83700 8.35606 9.16216 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.009136 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.968452 B = 3064.205638 C = 3778.957997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.384 5.384 3 N -0.337 5.337 4 C 0.045 3.955 5 C -0.286 4.286 6 C 0.097 3.903 7 C -0.040 4.040 8 H 0.070 0.930 9 C -0.090 4.090 10 C -0.122 4.122 11 C 0.135 3.865 12 N -0.610 5.610 13 C -0.263 4.263 14 H 0.071 0.929 15 C -0.050 4.050 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.274 1.274 21 C 0.203 3.797 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.214 0.786 26 H 0.156 0.844 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.015 0.985 33 H 0.248 0.752 34 H 0.049 0.951 35 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 3.301 10.697 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.166 5.166 3 N -0.159 5.159 4 C -0.139 4.139 5 C -0.315 4.315 6 C -0.031 4.031 7 C -0.062 4.062 8 H 0.089 0.911 9 C -0.128 4.128 10 C -0.161 4.161 11 C 0.010 3.990 12 N -0.333 5.333 13 C -0.394 4.394 14 H 0.088 0.912 15 C -0.245 4.245 16 N -0.580 5.580 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.224 1.224 20 H -0.200 1.200 21 C 0.076 3.924 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.231 0.769 26 H 0.174 0.826 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 1.460 4.382 10.548 11.515 hybrid contribution -0.290 -0.700 -1.078 1.317 sum 1.170 3.683 9.470 10.228 Atomic orbital electron populations 1.21981 0.73631 1.05396 1.03481 1.48685 1.07305 1.03320 1.57270 1.77195 1.02760 1.08917 1.27021 1.24321 0.95563 0.95311 0.98745 1.21443 0.96459 0.95392 1.18253 1.21375 0.91939 0.90375 0.99426 1.20432 0.99654 0.86782 0.99341 0.91125 1.21371 0.97786 0.94545 0.99103 1.21911 1.01471 0.95862 0.96868 1.21162 0.93434 0.93532 0.90864 1.44312 1.34710 1.02615 1.51613 1.19508 1.07180 1.11217 1.01451 0.91180 1.25796 1.01697 1.00519 0.96487 1.70197 1.35839 1.32466 1.19524 0.85398 0.80495 0.77744 0.77216 1.20053 1.22386 1.19969 1.20353 0.97036 0.84364 0.90677 0.91671 0.88579 0.87585 0.76926 0.82601 0.91834 0.90698 0.92390 0.89208 0.92593 0.96695 0.94266 0.93281 0.98862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.75 11.27 127.77 1.44 4.19 16 2 N -0.38 -13.50 4.01 -356.03 -1.43 -14.93 16 3 N -0.34 -11.80 12.58 -57.03 -0.72 -12.52 16 4 C 0.05 1.38 12.03 85.24 1.03 2.41 16 5 C -0.29 -9.35 9.98 21.99 0.22 -9.13 16 6 C 0.10 3.50 5.86 41.41 0.24 3.75 16 7 C -0.04 -1.49 2.53 -11.46 -0.03 -1.52 16 8 H 0.07 2.62 6.95 -2.39 -0.02 2.60 16 9 C -0.09 -2.77 4.72 30.62 0.14 -2.62 16 10 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 11 C 0.14 5.38 6.52 86.36 0.56 5.94 16 12 N -0.61 -30.08 3.00 -699.09 -2.09 -32.18 16 13 C -0.26 -14.26 9.59 84.03 0.81 -13.45 16 14 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 15 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 16 N -0.93 -55.59 11.19 21.65 0.24 -55.35 16 17 Si 0.96 44.32 29.59 68.60 2.03 46.35 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 C 0.20 9.72 4.58 86.37 0.40 10.12 16 22 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.10 2.51 6.98 -2.39 -0.02 2.50 16 24 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.21 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.16 4.51 7.40 -2.91 -0.02 4.49 16 27 H 0.06 1.95 7.35 -2.39 -0.02 1.93 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 32 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -66.72 283.64 4.50 -62.22 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.06 Total: 12.63 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.41 Total: -6.21 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -4.00 Total: -114.98 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.72 4.50 -62.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657021135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.379 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds