Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47273 * 2 1 4 4 N 1.31795 * 119.12336 * 269.72992 * 3 2 1 5 5 C 1.32328 * 120.81469 * 179.75955 * 4 3 2 6 6 C 1.38599 * 119.11060 * 0.50471 * 5 4 3 7 7 C 1.50697 * 120.80427 * 179.73059 * 6 5 4 8 8 N 1.46899 * 109.46831 * 270.01978 * 7 6 5 9 9 C 1.46899 * 110.99875 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47555 * 34.99977 * 9 8 7 11 11 C 1.53004 * 109.47395 * 275.00067 * 9 8 7 12 12 C 1.50697 * 109.47458 * 155.00160 * 9 8 7 13 13 H 1.08006 * 119.99826 * 5.46072 * 12 9 8 14 14 C 1.37872 * 120.00514 * 185.46108 * 12 9 8 15 15 N 1.31518 * 119.99670 * 9.54324 * 14 12 9 16 16 Si 1.86802 * 120.00411 * 189.54565 * 14 12 9 17 17 H 1.48495 * 109.47239 * 84.99160 * 16 14 12 18 18 H 1.48501 * 109.47026 * 204.99663 * 16 14 12 19 19 H 1.48504 * 109.46888 * 324.99346 * 16 14 12 20 20 C 1.38600 * 118.39317 * 359.75229 * 6 5 4 21 21 N 1.31798 * 119.12174 * 89.99952 * 3 2 1 22 22 H 1.08994 * 109.46759 * 299.99804 * 1 2 3 23 23 H 1.09000 * 109.47074 * 59.99904 * 1 2 3 24 24 H 1.09001 * 109.46748 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47009 * 239.99548 * 2 1 3 26 26 H 1.09000 * 109.47074 * 120.00096 * 2 1 3 27 27 H 1.08005 * 120.44987 * 180.23683 * 5 4 3 28 28 H 1.08992 * 109.47209 * 30.02014 * 7 6 5 29 29 H 1.08998 * 109.47056 * 150.02309 * 7 6 5 30 30 H 1.00900 * 110.99988 * 303.95466 * 8 7 6 31 31 H 1.08997 * 109.46788 * 303.75926 * 11 9 8 32 32 H 1.09004 * 109.46580 * 63.75765 * 11 9 8 33 33 H 1.08991 * 109.47769 * 183.75445 * 11 9 8 34 34 H 0.97004 * 120.00026 * 179.97438 * 15 14 12 35 35 H 1.08006 * 120.44645 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2513 2.0237 -1.1513 5 6 2.6880 3.2723 -1.1904 6 6 2.9246 3.9414 0.0001 7 6 3.4278 5.3619 0.0001 8 7 4.8968 5.3608 0.0001 9 6 5.4242 6.7319 0.0008 10 1 4.7690 7.3730 0.5905 11 6 5.4900 7.2538 -1.4360 12 6 6.8064 6.7383 0.6012 13 1 7.2842 5.8067 0.8664 14 6 7.4610 7.9332 0.8120 15 7 6.8164 9.0705 0.6678 16 14 9.2636 7.9370 1.3023 17 1 10.1082 7.8527 0.0839 18 1 9.5747 9.1908 2.0346 19 1 9.5406 6.7703 2.1784 20 6 2.6876 3.2724 1.1905 21 7 2.2462 2.0255 1.1514 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.8618 3.7620 -2.1372 28 1 3.0649 5.8760 -0.8898 29 1 3.0649 5.8759 0.8901 30 1 5.2580 4.8345 0.7815 31 1 6.0912 6.5757 -2.0416 32 1 4.4824 7.3123 -1.8477 33 1 5.9430 8.2451 -1.4422 34 1 7.2769 9.9112 0.8164 35 1 2.8612 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657903435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = 31.816312 kcal Electronic energy + Delta-G solvation = -15902.636276 eV Core-core repulsion = 13321.136296 eV Total energy + Delta-G solvation = -2581.499980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96377 -36.38195 -34.41862 -33.55900 -32.73160 -30.96128 -28.32395 -25.75524 -25.03714 -24.49531 -23.07955 -21.29792 -19.90289 -17.64003 -16.84445 -16.52037 -15.16965 -14.85514 -14.40771 -14.21251 -13.88344 -13.79411 -13.49558 -13.30170 -12.64570 -12.35632 -11.98828 -11.83151 -11.50257 -11.21969 -10.99959 -10.80854 -10.71714 -10.65560 -10.36175 -10.31095 -10.04462 -9.15570 -9.08266 -8.90680 -8.50181 -7.42599 -6.12207 -4.14777 1.02460 1.22722 3.27437 3.33831 3.36480 3.83633 3.97005 4.25884 4.36616 4.80553 4.96652 5.04816 5.10481 5.13016 5.19439 5.22201 5.47753 5.66048 5.71403 5.75456 5.94546 6.02162 6.09656 6.25244 6.55152 6.73740 7.00450 7.06749 7.10525 7.29771 7.71824 7.75387 8.07617 8.20917 8.22050 8.54990 8.94626 9.50618 10.96881 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.004490 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.262315 B = 6234.817956 C = 6456.467814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C 0.302 3.698 4 N -0.520 5.520 5 C 0.164 3.836 6 C -0.173 4.173 7 C 0.104 3.896 8 N -0.683 5.683 9 C 0.209 3.791 10 H 0.011 0.989 11 C -0.120 4.120 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.149 3.851 21 N -0.519 5.519 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.333 0.667 31 H 0.035 0.965 32 H 0.009 0.991 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -11.896 -1.104 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.034 3.966 4 N -0.233 5.233 5 C -0.002 4.002 6 C -0.178 4.178 7 C -0.027 4.027 8 N -0.315 5.315 9 C 0.102 3.898 10 H 0.029 0.971 11 C -0.178 4.178 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.017 4.017 21 N -0.232 5.232 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.185 0.815 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.150 0.850 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.629 -12.680 -1.775 16.641 hybrid contribution 1.243 1.448 1.144 2.225 sum -9.386 -11.232 -0.630 14.651 Atomic orbital electron populations 1.21679 0.93874 1.02181 1.02326 1.20284 0.96526 0.88470 1.03903 1.23112 0.92453 0.97197 0.83789 1.68234 1.14040 1.10605 1.30428 1.23145 0.89375 0.89029 0.98655 1.21845 1.00704 0.99994 0.95219 1.20765 0.91577 0.89005 1.01335 1.60831 1.02607 1.18719 1.49329 1.19153 0.94659 0.82590 0.93371 0.97106 1.21659 0.97078 1.01361 0.97704 1.21189 1.00648 0.92786 1.41590 0.92174 1.24911 0.98266 0.95461 0.95080 1.69966 1.35956 0.97413 1.49242 0.86580 0.85297 0.77345 0.78599 1.20454 1.21327 1.19943 1.23165 0.90534 0.89469 0.98535 1.68208 1.14059 1.10457 1.30511 0.92417 0.92407 0.91678 0.89437 0.89471 0.81468 0.90351 0.94570 0.84997 0.94598 0.97213 0.91735 0.92811 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.90 37.16 0.37 -0.93 16 2 C -0.05 -0.56 6.37 -27.88 -0.18 -0.74 16 3 C 0.30 4.30 6.90 -157.19 -1.08 3.22 16 4 N -0.52 -7.78 10.33 -10.72 -0.11 -7.89 16 5 C 0.16 2.41 11.01 -17.20 -0.19 2.22 16 6 C -0.17 -2.59 5.43 -104.36 -0.57 -3.16 16 7 C 0.10 1.72 5.66 -4.98 -0.03 1.69 16 8 N -0.68 -13.80 6.29 -109.23 -0.69 -14.49 16 9 C 0.21 5.08 2.47 -68.86 -0.17 4.91 16 10 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 11 C -0.12 -2.81 9.27 37.16 0.34 -2.47 16 12 C -0.52 -14.02 8.48 -34.44 -0.29 -14.31 16 13 H 0.06 1.60 7.69 -52.48 -0.40 1.20 16 14 C 0.07 1.78 5.17 -17.82 -0.09 1.68 16 15 N -0.89 -24.98 12.16 55.43 0.67 -24.31 16 16 Si 0.89 20.98 29.55 -169.99 -5.02 15.96 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.15 2.16 11.01 -17.20 -0.19 1.97 16 21 N -0.52 -7.74 10.33 -10.72 -0.11 -7.85 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 28 H 0.08 1.27 7.47 -51.93 -0.39 0.89 16 29 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 30 H 0.33 6.72 8.25 -39.29 -0.32 6.39 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.01 0.19 7.55 -51.93 -0.39 -0.20 16 33 H 0.06 1.66 6.83 -51.93 -0.35 1.30 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -29.06 298.47 -8.03 -37.10 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.20 Total: 2.90 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.08 Total: -5.91 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.23 Total: -54.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.06 -8.03 -37.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.912 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds