Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47273 * 2 1 4 4 N 1.31795 * 119.12336 * 269.72992 * 3 2 1 5 5 C 1.32328 * 120.81469 * 179.75955 * 4 3 2 6 6 C 1.38599 * 119.11060 * 0.50471 * 5 4 3 7 7 C 1.50697 * 120.80427 * 179.73059 * 6 5 4 8 8 N 1.46899 * 109.46831 * 270.01978 * 7 6 5 9 9 C 1.46899 * 110.99875 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47555 * 34.99977 * 9 8 7 11 11 C 1.53004 * 109.47395 * 275.00067 * 9 8 7 12 12 C 1.50697 * 109.47458 * 155.00160 * 9 8 7 13 13 H 1.08006 * 119.99826 * 5.46072 * 12 9 8 14 14 C 1.37872 * 120.00514 * 185.46108 * 12 9 8 15 15 N 1.31518 * 119.99670 * 9.54324 * 14 12 9 16 16 Si 1.86802 * 120.00411 * 189.54565 * 14 12 9 17 17 H 1.48495 * 109.47239 * 84.99160 * 16 14 12 18 18 H 1.48501 * 109.47026 * 204.99663 * 16 14 12 19 19 H 1.48504 * 109.46888 * 324.99346 * 16 14 12 20 20 C 1.38600 * 118.39317 * 359.75229 * 6 5 4 21 21 N 1.31798 * 119.12174 * 89.99952 * 3 2 1 22 22 H 1.08994 * 109.46759 * 299.99804 * 1 2 3 23 23 H 1.09000 * 109.47074 * 59.99904 * 1 2 3 24 24 H 1.09001 * 109.46748 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47009 * 239.99548 * 2 1 3 26 26 H 1.09000 * 109.47074 * 120.00096 * 2 1 3 27 27 H 1.08005 * 120.44987 * 180.23683 * 5 4 3 28 28 H 1.08992 * 109.47209 * 30.02014 * 7 6 5 29 29 H 1.08998 * 109.47056 * 150.02309 * 7 6 5 30 30 H 1.00900 * 110.99988 * 303.95466 * 8 7 6 31 31 H 1.08997 * 109.46788 * 303.75926 * 11 9 8 32 32 H 1.09004 * 109.46580 * 63.75765 * 11 9 8 33 33 H 1.08991 * 109.47769 * 183.75445 * 11 9 8 34 34 H 0.97004 * 120.00026 * 179.97438 * 15 14 12 35 35 H 1.08006 * 120.44645 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2513 2.0237 -1.1513 5 6 2.6880 3.2723 -1.1904 6 6 2.9246 3.9414 0.0001 7 6 3.4278 5.3619 0.0001 8 7 4.8968 5.3608 0.0001 9 6 5.4242 6.7319 0.0008 10 1 4.7690 7.3730 0.5905 11 6 5.4900 7.2538 -1.4360 12 6 6.8064 6.7383 0.6012 13 1 7.2842 5.8067 0.8664 14 6 7.4610 7.9332 0.8120 15 7 6.8164 9.0705 0.6678 16 14 9.2636 7.9370 1.3023 17 1 10.1082 7.8527 0.0839 18 1 9.5747 9.1908 2.0346 19 1 9.5406 6.7703 2.1784 20 6 2.6876 3.2724 1.1905 21 7 2.2462 2.0255 1.1514 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.8618 3.7620 -2.1372 28 1 3.0649 5.8760 -0.8898 29 1 3.0649 5.8759 0.8901 30 1 5.2580 4.8345 0.7815 31 1 6.0912 6.5757 -2.0416 32 1 4.4824 7.3123 -1.8477 33 1 5.9430 8.2451 -1.4422 34 1 7.2769 9.9112 0.8164 35 1 2.8612 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657903435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = 13.201987 kcal Electronic energy + Delta-G solvation = -15903.443453 eV Core-core repulsion = 13321.136296 eV Total energy + Delta-G solvation = -2582.307158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.08496 -37.98277 -35.68581 -34.68825 -34.34228 -32.39327 -29.90174 -27.41462 -26.60769 -25.62529 -24.23432 -22.42713 -21.74228 -18.81403 -18.60006 -17.70492 -16.94230 -16.09342 -16.02330 -15.49228 -15.19635 -14.96110 -14.67789 -14.40659 -14.35615 -13.66042 -13.31154 -13.29651 -12.82121 -12.70701 -12.58771 -12.38085 -12.26242 -12.06130 -11.99650 -11.78200 -11.56389 -10.96889 -10.55419 -10.26824 -10.21695 -9.10120 -8.18293 -6.27109 -0.11179 0.09320 1.41670 1.43967 1.52172 2.41018 2.71338 2.98007 3.14157 3.19175 3.62701 3.70824 3.85502 4.00990 4.20476 4.30030 4.39628 4.63303 4.68782 4.80338 4.85380 4.98086 5.01421 5.07091 5.17145 5.17940 5.27913 5.40485 5.48179 5.65319 5.81730 5.97759 6.14650 6.39761 6.73339 6.96186 7.09281 7.42364 8.90416 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.004490 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.262315 B = 6234.817956 C = 6456.467814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.054 4.054 3 C 0.296 3.704 4 N -0.532 5.532 5 C 0.162 3.838 6 C -0.181 4.181 7 C 0.112 3.888 8 N -0.681 5.681 9 C 0.214 3.786 10 H -0.018 1.018 11 C -0.109 4.109 12 C -0.540 4.540 13 H 0.057 0.943 14 C 0.019 3.981 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.148 3.852 21 N -0.532 5.532 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.182 0.818 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.332 0.668 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.537 -13.231 -1.146 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C 0.029 3.971 4 N -0.246 5.246 5 C -0.004 4.004 6 C -0.185 4.185 7 C -0.019 4.019 8 N -0.312 5.312 9 C 0.106 3.894 10 H 0.000 1.000 11 C -0.168 4.168 12 C -0.579 4.579 13 H 0.075 0.925 14 C -0.181 4.181 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.018 4.018 21 N -0.245 5.245 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.199 0.801 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.791 -14.036 -1.819 17.798 hybrid contribution 1.218 1.803 1.158 2.465 sum -9.573 -12.233 -0.661 15.547 Atomic orbital electron populations 1.21644 0.92601 1.03642 1.01529 1.20460 0.97492 0.86470 1.04853 1.23853 0.91328 0.98453 0.83451 1.68331 1.14711 1.10724 1.30796 1.23429 0.88664 0.89106 0.99177 1.21615 1.02051 0.99114 0.95740 1.20683 0.89210 0.90355 1.01603 1.60728 1.04987 1.16194 1.49266 1.18946 0.93294 0.84141 0.93029 1.00016 1.21496 0.98176 0.99685 0.97423 1.21527 1.01933 0.92721 1.41671 0.92488 1.25655 1.02050 0.95186 0.95214 1.70071 1.37412 0.97869 1.50169 0.85616 0.80524 0.77444 0.78320 1.20140 1.21013 1.19325 1.23455 0.89726 0.89500 0.99085 1.68308 1.14738 1.10605 1.30883 0.93206 0.93146 0.89119 0.88455 0.88514 0.80071 0.89899 0.94441 0.85088 0.94592 0.94920 0.94348 0.92787 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.90 71.98 0.71 -1.47 16 2 C -0.05 -1.04 6.37 29.85 0.19 -0.85 16 3 C 0.30 7.99 6.90 138.75 0.96 8.95 16 4 N -0.53 -15.16 10.33 -187.84 -1.94 -17.10 16 5 C 0.16 4.53 11.01 84.70 0.93 5.46 16 6 C -0.18 -5.19 5.43 -19.69 -0.11 -5.30 16 7 C 0.11 3.60 5.66 85.56 0.48 4.08 16 8 N -0.68 -27.09 6.29 -499.48 -3.14 -30.23 16 9 C 0.21 10.40 2.47 44.17 0.11 10.51 16 10 H -0.02 -0.96 7.74 -2.39 -0.02 -0.97 16 11 C -0.11 -5.11 9.27 71.98 0.67 -4.45 16 12 C -0.54 -28.94 8.48 25.60 0.22 -28.72 16 13 H 0.06 3.02 7.69 -2.91 -0.02 3.00 16 14 C 0.02 1.02 5.17 84.65 0.44 1.46 16 15 N -0.92 -51.99 12.16 21.45 0.26 -51.73 16 16 Si 0.96 42.87 29.55 68.60 2.03 44.89 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 C 0.15 4.11 11.01 84.70 0.93 5.04 16 21 N -0.53 -15.14 10.33 -187.84 -1.94 -17.08 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.18 4.39 8.06 -2.91 -0.02 4.36 16 28 H 0.08 2.59 7.47 -2.39 -0.02 2.57 16 29 H 0.04 1.21 8.02 -2.39 -0.02 1.19 16 30 H 0.33 13.24 8.25 -89.69 -0.74 12.50 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.33 7.55 -2.39 -0.02 1.31 16 33 H 0.04 1.97 6.83 -2.39 -0.02 1.95 16 34 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -60.72 298.47 1.13 -59.59 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.33 Total: 16.94 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.53 Total: -5.28 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -6.76 Total: -116.14 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -60.72 1.13 -59.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657903435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.787 kcal (2) G-P(sol) polarization free energy of solvation -60.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds