Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47578 * 2 1 4 4 C 1.36935 * 120.00011 * 92.43052 * 3 2 1 5 5 H 1.07998 * 119.99976 * 33.86245 * 4 3 2 6 6 C 1.38808 * 119.99909 * 213.58737 * 4 3 2 7 7 N 1.31626 * 119.99996 * 23.44985 * 6 4 3 8 8 Si 1.86798 * 120.00211 * 203.45029 * 6 4 3 9 9 H 1.48500 * 109.46967 * 89.99984 * 8 6 4 10 10 H 1.48503 * 109.47305 * 210.00338 * 8 6 4 11 11 H 1.48500 * 109.47083 * 329.99992 * 8 6 4 12 12 C 1.46497 * 119.99775 * 272.43295 * 3 2 1 13 13 C 1.50700 * 109.47394 * 269.99730 * 12 3 2 14 14 C 1.34663 * 125.99217 * 94.71621 * 13 12 3 15 15 N 1.36879 * 106.82131 * 179.85151 * 14 13 12 16 16 C 1.46494 * 126.40148 * 180.19099 * 15 14 13 17 17 C 1.52999 * 117.49970 * 188.90874 * 16 15 14 18 18 C 1.52995 * 117.50038 * 120.28638 * 16 15 14 19 19 C 1.35047 * 107.20220 * 0.41178 * 15 14 13 20 20 N 1.30496 * 108.69872 * 359.74140 * 19 15 14 21 21 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47306 * 300.00515 * 1 2 3 23 23 H 1.09010 * 109.46797 * 60.00232 * 1 2 3 24 24 H 1.09000 * 109.47306 * 239.99485 * 2 1 3 25 25 H 1.09001 * 109.47104 * 120.00327 * 2 1 3 26 26 H 0.96999 * 120.00029 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47317 * 30.00282 * 12 3 2 28 28 H 1.09008 * 109.47014 * 149.99503 * 12 3 2 29 29 H 1.08006 * 126.58912 * 359.96603 * 14 13 12 30 30 H 1.09004 * 115.55054 * 334.61683 * 16 15 14 31 31 H 1.08995 * 117.50067 * 0.02562 * 17 16 15 32 32 H 1.08999 * 117.49837 * 145.02128 * 17 16 15 33 33 H 1.09005 * 117.50421 * 214.98200 * 18 16 15 34 34 H 1.09003 * 117.49992 * 359.97410 * 18 16 15 35 35 H 1.07994 * 125.65072 * 179.76460 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2941 2.0099 1.1848 5 1 2.6849 1.4447 2.0179 6 6 2.0765 3.3748 1.3133 7 7 1.2122 3.9804 0.5266 8 14 3.0103 4.3523 2.6025 9 1 4.2766 4.8609 2.0169 10 1 2.1789 5.4968 3.0542 11 1 3.3177 3.4760 3.7614 12 6 2.2118 2.0897 -1.2676 13 6 3.6164 1.8594 -1.7626 14 6 4.0019 0.9104 -2.6367 15 7 5.3517 1.0566 -2.8106 16 6 6.2094 0.2458 -3.6783 17 6 7.7218 0.4468 -3.5639 18 6 6.9716 0.9671 -4.7916 19 6 5.7459 2.0849 -2.0290 20 7 4.7029 2.5602 -1.4052 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.0599 4.9341 0.6166 27 1 1.5010 1.7162 -2.0047 28 1 2.0505 3.1570 -1.1156 29 1 3.3675 0.1762 -3.1111 30 1 5.8495 -0.7620 -3.8860 31 1 8.0787 1.1820 -2.8428 32 1 8.3573 -0.4288 -3.6962 33 1 7.1136 0.4338 -5.7317 34 1 6.8346 2.0450 -4.8788 35 1 6.7569 2.4532 -1.9358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658449263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = 115.650802 kcal Electronic energy + Delta-G solvation = -16642.686511 eV Core-core repulsion = 14064.821867 eV Total energy + Delta-G solvation = -2577.864644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42139 -37.30051 -35.63566 -31.63488 -31.47136 -29.91525 -28.13762 -25.33032 -23.47213 -23.14339 -22.65893 -20.46963 -20.07427 -18.84150 -17.31390 -16.43500 -15.37404 -14.60546 -14.40509 -13.88750 -13.70504 -13.54586 -13.31825 -13.04661 -12.44248 -12.09122 -11.85849 -11.40881 -11.16781 -10.96482 -10.94238 -10.81545 -10.53309 -10.23974 -9.93936 -9.87639 -9.63741 -9.00945 -8.74137 -8.28186 -7.61629 -6.46359 -5.59331 -3.10393 2.55122 3.07998 3.55317 3.59956 3.61460 3.65857 4.01008 4.37396 4.56676 4.66209 4.71847 5.12763 5.27882 5.35985 5.54566 5.58433 5.65253 5.76828 5.81132 6.16253 6.20624 6.41590 6.54664 6.64405 6.72973 6.84194 7.01559 7.07124 7.34137 7.56030 7.83798 7.92982 8.00573 8.68479 8.98966 9.37276 10.03149 10.56843 11.42500 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.007727 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.309047 B = 3623.000038 C = 4356.788822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 N -0.574 5.574 4 C -0.247 4.247 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.210 3.790 13 C 0.031 3.969 14 C -0.080 4.080 15 N -0.442 5.442 16 C 0.066 3.934 17 C -0.177 4.177 18 C -0.183 4.183 19 C 0.157 3.843 20 N -0.462 5.462 21 H 0.029 0.971 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.040 0.960 26 H 0.252 0.748 27 H 0.035 0.965 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -7.894 -10.401 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 N -0.294 5.294 4 C -0.377 4.377 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.222 1.222 11 H -0.207 1.207 12 C 0.082 3.918 13 C -0.101 4.101 14 C -0.210 4.210 15 N -0.127 5.127 16 C -0.040 4.040 17 C -0.215 4.215 18 C -0.221 4.221 19 C -0.124 4.124 20 N -0.180 5.180 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.179 0.821 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.186 -7.151 -9.886 15.272 hybrid contribution 0.716 -0.229 -0.003 0.752 sum 9.902 -7.380 -9.888 15.821 Atomic orbital electron populations 1.22292 0.99745 0.98223 1.01939 1.20820 0.91839 0.87623 0.97926 1.43758 1.73818 1.09837 1.02003 1.18930 1.36059 0.91485 0.91181 0.92621 1.24914 0.96902 0.98223 0.98113 1.69947 1.32338 1.09741 1.41141 0.86409 0.80282 0.79621 0.81104 1.21014 1.22170 1.20744 1.19411 0.84193 1.02636 0.85541 1.22497 0.98169 0.93648 0.95742 1.22401 0.83242 1.06583 1.08773 1.44819 1.07366 1.26450 1.34077 1.21811 0.89695 0.95944 0.96538 1.23346 0.92825 1.04270 1.01034 1.23463 1.03157 1.01762 0.93726 1.24824 1.00362 0.91327 0.95914 1.70364 0.97975 1.27413 1.22247 0.95239 0.92613 0.93813 0.95309 0.94162 0.93767 0.94648 0.86955 0.82109 0.84819 0.87829 0.87385 0.87623 0.88005 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 37.15 0.38 -2.94 16 2 C 0.14 3.19 6.39 -4.04 -0.03 3.16 16 3 N -0.57 -15.00 2.44 -174.61 -0.43 -15.42 16 4 C -0.25 -7.14 9.47 -15.06 -0.14 -7.28 16 5 H 0.06 1.63 7.93 -52.49 -0.42 1.22 16 6 C 0.02 0.53 4.94 -17.43 -0.09 0.44 16 7 N -0.89 -26.64 11.32 55.49 0.63 -26.01 16 8 Si 0.90 23.33 29.61 -169.99 -5.03 18.29 16 9 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 C 0.21 5.27 5.84 -5.20 -0.03 5.24 16 13 C 0.03 0.71 6.67 -82.85 -0.55 0.16 16 14 C -0.08 -1.49 11.49 -16.56 -0.19 -1.68 16 15 N -0.44 -7.15 3.08 -111.47 -0.34 -7.49 16 16 C 0.07 0.73 6.89 -67.94 -0.47 0.26 16 17 C -0.18 -1.54 9.98 -26.73 -0.27 -1.81 16 18 C -0.18 -1.63 10.39 -26.74 -0.28 -1.90 16 19 C 0.16 2.87 11.89 -90.37 -1.07 1.80 16 20 N -0.46 -10.88 11.25 -10.88 -0.12 -11.01 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.04 0.88 8.02 -51.93 -0.42 0.47 16 26 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.11 3.25 5.31 -51.92 -0.28 2.97 16 29 H 0.16 2.57 8.06 -52.48 -0.42 2.14 16 30 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.10 0.94 6.84 -51.93 -0.36 0.58 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.19 2.73 7.03 -52.49 -0.37 2.36 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -33.39 297.88 -8.73 -42.12 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.19 Total: -0.43 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -2.74 Total: -4.55 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.26 Total: -59.93 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.03 Total: 18.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.39 -8.73 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658449263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.772 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds